hg19_v2_chr1_-_153113927_153113972	3.43575	NKX3-1	ENST00000368752.4|SPRR2B|ENSG00000196805.6|small proline-rich protein 2B
hg19_v2_chr1_-_153066998_153067008	3.23588	NKX3-1	ENST00000368750.3|SPRR2E|ENSG00000203785.4|small proline-rich protein 2E
hg19_v2_chr10_+_118187379_118187397	2.92475	NKX3-1	ENST00000369230.3|PNLIPRP3|ENSG00000203837.4|pancreatic lipase-related protein 3
hg19_v2_chrX_-_107681633_107681692	2.5377	NKX3-1	ENST00000394872.2|COL4A6|ENSG00000197565.11|collagen, type IV, alpha 6 	ENST00000334504.7|COL4A6|ENSG00000197565.11|collagen, type IV, alpha 6
hg19_v2_chr5_+_150404904_150404928	2.41381	NKX3-1	ENST00000521632.1|GPX3|ENSG00000211445.7|glutathione peroxidase 3 (plasma)
hg19_v2_chr1_-_153085984_153085999	2.24761	NKX3-1	ENST00000468739.1|SPRR2F|ENSG00000244094.1|small proline-rich protein 2F
hg19_v2_chr18_+_61445007_61445021	2.2008	NKX3-1	ENST00000447428.1|SERPINB7|ENSG00000166396.8|serpin peptidase inhibitor, clade B (ovalbumin), member 7 	ENST00000546027.1|SERPINB7|ENSG00000166396.8|serpin peptidase inhibitor, clade B (ovalbumin), member 7
hg19_v2_chr19_+_16308711_16308786	2.18403	NKX3-1	ENST00000429941.2|AP1M1|ENSG00000072958.4|adaptor-related protein complex 1, mu 1 subunit 	ENST00000444449.2|AP1M1|ENSG00000072958.4|adaptor-related protein complex 1, mu 1 subunit 	ENST00000589822.1|AP1M1|ENSG00000072958.4|adaptor-related protein complex 1, mu 1 subunit
hg19_v2_chr6_-_39290316_39290388	2.18189	NKX3-1	ENST00000425054.2|KCNK16|ENSG00000095981.6|potassium channel, subfamily K, member 16 	ENST00000373227.4|KCNK16|ENSG00000095981.6|potassium channel, subfamily K, member 16 	ENST00000373229.5|KCNK16|ENSG00000095981.6|potassium channel, subfamily K, member 16 	ENST00000437525.2|KCNK16|ENSG00000095981.6|potassium channel, subfamily K, member 16
hg19_v2_chr5_+_68485433_68485569	2.15604	NKX3-1	ENST00000502689.1|CENPH|ENSG00000153044.5|centromere protein H
hg19_v2_chr6_+_24775641_24775710	2.00813	NKX3-1	ENST00000378054.2|GMNN|ENSG00000112312.5|geminin, DNA replication inhibitor 	ENST00000476555.1|GMNN|ENSG00000112312.5|geminin, DNA replication inhibitor
hg19_v2_chr2_+_102456277_102456290	1.98328	NKX3-1	ENST00000421882.1|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr19_-_14889349_14889381	1.97095	NKX3-1	ENST00000315576.3|EMR2|ENSG00000127507.13|egf-like module containing, mucin-like, hormone receptor-like 2 	ENST00000392967.2|EMR2|ENSG00000127507.13|egf-like module containing, mucin-like, hormone receptor-like 2 	ENST00000346057.1|EMR2|ENSG00000127507.13|egf-like module containing, mucin-like, hormone receptor-like 2 	ENST00000353876.1|EMR2|ENSG00000127507.13|egf-like module containing, mucin-like, hormone receptor-like 2 	ENST00000353005.1|EMR2|ENSG00000127507.13|egf-like module containing, mucin-like, hormone receptor-like 2
hg19_v2_chr20_-_56285595_56285656	1.79707	NKX3-1	ENST00000395816.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1 	ENST00000347215.4|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1
hg19_v2_chr19_-_11266471_11266484	1.77584	NKX3-1	ENST00000592540.1|SPC24|ENSG00000161888.7|SPC24, NDC80 kinetochore complex component
hg19_v2_chr11_-_62323702_62323738	1.76989	NKX3-1	ENST00000530285.1|AHNAK|ENSG00000124942.9|AHNAK nucleoprotein
hg19_v2_chr20_-_56286479_56286541	1.72081	NKX3-1	ENST00000265626.4|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1
hg19_v2_chr19_+_16308659_16308670	1.71577	NKX3-1	ENST00000590263.1|AP1M1|ENSG00000072958.4|adaptor-related protein complex 1, mu 1 subunit 	ENST00000590756.1|AP1M1|ENSG00000072958.4|adaptor-related protein complex 1, mu 1 subunit 	ENST00000541844.1|AP1M1|ENSG00000072958.4|adaptor-related protein complex 1, mu 1 subunit
hg19_v2_chr5_+_96211643_96211697	1.71525	NKX3-1	ENST00000437043.3|ERAP2|ENSG00000164308.12|endoplasmic reticulum aminopeptidase 2 	ENST00000510373.1|ERAP2|ENSG00000164308.12|endoplasmic reticulum aminopeptidase 2
hg19_v2_chr19_-_44174330_44174502	1.69389	NKX3-1	ENST00000340093.3|PLAUR|ENSG00000011422.7|plasminogen activator, urokinase receptor
hg19_v2_chr2_+_48541776_48541874	1.66235	NKX3-1	ENST00000413569.1|FOXN2|ENSG00000170802.11|forkhead box N2 	ENST00000340553.3|FOXN2|ENSG00000170802.11|forkhead box N2
hg19_v2_chr17_-_76870222_76870242	1.58374	NKX3-1	ENST00000585421.1|TIMP2|ENSG00000035862.8|TIMP metallopeptidase inhibitor 2
hg19_v2_chr17_-_76870126_76870201	1.56679	NKX3-1	ENST00000586057.1|TIMP2|ENSG00000035862.8|TIMP metallopeptidase inhibitor 2
hg19_v2_chr2_-_102003987_102004057	1.55633	NKX3-1	ENST00000324768.5|CREG2|ENSG00000175874.5|cellular repressor of E1A-stimulated genes 2
hg19_v2_chr8_+_27168988_27169021	1.54558	NKX3-1	ENST00000397501.1|PTK2B|ENSG00000120899.13|protein tyrosine kinase 2 beta 	ENST00000338238.4|PTK2B|ENSG00000120899.13|protein tyrosine kinase 2 beta 	ENST00000544172.1|PTK2B|ENSG00000120899.13|protein tyrosine kinase 2 beta
hg19_v2_chr2_-_36779411_36779411	1.54504	NKX3-1	ENST00000406220.1|AC007401.2|ENSG00000217075.1|Uncharacterized protein
hg19_v2_chr9_+_706842_706889	1.54201	NKX3-1	ENST00000382293.3|KANK1|ENSG00000107104.14|KN motif and ankyrin repeat domains 1
hg19_v2_chr4_-_76928641_76928668	1.51092	NKX3-1	ENST00000264888.5|CXCL9|ENSG00000138755.5|chemokine (C-X-C motif) ligand 9
hg19_v2_chr3_-_48632593_48632770	1.46816	NKX3-1	ENST00000454817.1|COL7A1|ENSG00000114270.11|collagen, type VII, alpha 1 	ENST00000328333.8|COL7A1|ENSG00000114270.11|collagen, type VII, alpha 1
hg19_v2_chr9_+_36572851_36572932	1.43885	NKX3-1	ENST00000298048.2|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000538311.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000536987.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000545008.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000536860.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000536329.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000541717.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000543751.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase
hg19_v2_chr12_+_110011571_110011644	1.43275	NKX3-1	ENST00000539696.1|MVK|ENSG00000110921.7|mevalonate kinase 	ENST00000228510.3|MVK|ENSG00000110921.7|mevalonate kinase 	ENST00000392727.3|MVK|ENSG00000110921.7|mevalonate kinase
hg19_v2_chr17_-_39526052_39526052	1.42968	NKX3-1	ENST00000251646.3|KRT33B|ENSG00000131738.5|keratin 33B
hg19_v2_chr1_-_208417620_208417680	1.41823	NKX3-1	ENST00000367033.3|PLXNA2|ENSG00000076356.6|plexin A2
hg19_v2_chr10_-_103347883_103348027	1.39168	NKX3-1	ENST00000339310.3|POLL|ENSG00000166169.12|polymerase (DNA directed), lambda 	ENST00000370158.3|POLL|ENSG00000166169.12|polymerase (DNA directed), lambda 	ENST00000299206.4|POLL|ENSG00000166169.12|polymerase (DNA directed), lambda 	ENST00000456836.2|POLL|ENSG00000166169.12|polymerase (DNA directed), lambda 	ENST00000413344.1|POLL|ENSG00000166169.12|polymerase (DNA directed), lambda 	ENST00000429502.1|POLL|ENSG00000166169.12|polymerase (DNA directed), lambda 	ENST00000430045.1|POLL|ENSG00000166169.12|polymerase (DNA directed), lambda 	ENST00000370172.1|POLL|ENSG00000166169.12|polymerase (DNA directed), lambda 	ENST00000436284.2|POLL|ENSG00000166169.12|polymerase (DNA directed), lambda 	ENST00000370162.3|POLL|ENSG00000166169.12|polymerase (DNA directed), lambda
hg19_v2_chr17_+_2699697_2699776	1.32602	NKX3-1	ENST00000254695.8|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2 	ENST00000366401.4|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2 	ENST00000542807.1|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2
hg19_v2_chr6_-_144385698_144385742	1.29904	NKX3-1	ENST00000444202.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1 	ENST00000437412.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1
hg19_v2_chr17_+_33914460_33914536	1.26019	NKX3-1	ENST00000537622.2|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr6_-_26124138_26124168	1.16869	NKX3-1	ENST00000314332.5|HIST1H2BC|ENSG00000180596.7|histone cluster 1, H2bc 	ENST00000396984.1|HIST1H2BC|ENSG00000180596.7|histone cluster 1, H2bc
hg19_v2_chr9_+_116263639_116263707	1.11222	NKX3-1	ENST00000343817.5|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr5_+_68485363_68485431	1.10542	NKX3-1	ENST00000283006.2|CENPH|ENSG00000153044.5|centromere protein H 	ENST00000515001.1|CENPH|ENSG00000153044.5|centromere protein H
hg19_v2_chr5_-_76788134_76788148	1.08667	NKX3-1	ENST00000507029.1|WDR41|ENSG00000164253.8|WD repeat domain 41
hg19_v2_chr1_-_6445809_6445885	1.08366	NKX3-1	ENST00000377855.2|ACOT7|ENSG00000097021.15|acyl-CoA thioesterase 7
hg19_v2_chr17_+_33914276_33914386	1.04789	NKX3-1	ENST00000592545.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000538556.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000312678.8|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000589344.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr3_+_100354442_100354464	1.00842	NKX3-1	ENST00000475887.1|GPR128|ENSG00000144820.3|G protein-coupled receptor 128
hg19_v2_chr3_+_156799587_156799630	0.987275	NKX3-1	ENST00000469196.1|RP11-6F2.5|ENSG00000241544.1|RP11-6F2.5
hg19_v2_chr8_-_49833978_49833996	0.959274	NKX3-1	ENST00000020945.1|SNAI2|ENSG00000019549.4|snail family zinc finger 2
hg19_v2_chr5_-_76788024_76788112	0.950998	NKX3-1	ENST00000515253.1|WDR41|ENSG00000164253.8|WD repeat domain 41 	ENST00000414719.2|WDR41|ENSG00000164253.8|WD repeat domain 41 	ENST00000507654.1|WDR41|ENSG00000164253.8|WD repeat domain 41 	ENST00000514559.1|WDR41|ENSG00000164253.8|WD repeat domain 41 	ENST00000511791.1|WDR41|ENSG00000164253.8|WD repeat domain 41
hg19_v2_chr14_-_102829051_102829237	0.947594	NKX3-1	ENST00000536961.2|CINP|ENSG00000100865.10|cyclin-dependent kinase 2 interacting protein 	ENST00000541568.2|CINP|ENSG00000100865.10|cyclin-dependent kinase 2 interacting protein 	ENST00000216756.6|CINP|ENSG00000100865.10|cyclin-dependent kinase 2 interacting protein
hg19_v2_chr3_+_26735991_26736046	0.931853	NKX3-1	ENST00000456208.2|LRRC3B|ENSG00000179796.7|leucine rich repeat containing 3B
hg19_v2_chr12_-_4553385_4553385	0.92707	NKX3-1	ENST00000543077.1|FGF6|ENSG00000111241.2|fibroblast growth factor 6
hg19_v2_chr10_+_91461337_91461380	0.911986	NKX3-1	ENST00000260753.4|KIF20B|ENSG00000138182.10|kinesin family member 20B 	ENST00000416354.1|KIF20B|ENSG00000138182.10|kinesin family member 20B 	ENST00000394289.2|KIF20B|ENSG00000138182.10|kinesin family member 20B 	ENST00000371728.3|KIF20B|ENSG00000138182.10|kinesin family member 20B
hg19_v2_chr3_-_81811312_81811312	0.89562	NKX3-1	ENST00000429644.2|GBE1|ENSG00000114480.8|glucan (1,4-alpha-), branching enzyme 1
hg19_v2_chr3_+_160117418_160117463	0.865847	NKX3-1	ENST00000465903.1|SMC4|ENSG00000113810.11|structural maintenance of chromosomes 4 	ENST00000485645.1|SMC4|ENSG00000113810.11|structural maintenance of chromosomes 4 	ENST00000360111.2|SMC4|ENSG00000113810.11|structural maintenance of chromosomes 4 	ENST00000472991.1|SMC4|ENSG00000113810.11|structural maintenance of chromosomes 4 	ENST00000467468.1|SMC4|ENSG00000113810.11|structural maintenance of chromosomes 4 	ENST00000469762.1|SMC4|ENSG00000113810.11|structural maintenance of chromosomes 4 	ENST00000489573.1|SMC4|ENSG00000113810.11|structural maintenance of chromosomes 4 	ENST00000462787.1|SMC4|ENSG00000113810.11|structural maintenance of chromosomes 4 	ENST00000490207.1|SMC4|ENSG00000113810.11|structural maintenance of chromosomes 4 	ENST00000485867.1|SMC4|ENSG00000113810.11|structural maintenance of chromosomes 4
hg19_v2_chr8_-_49834299_49834446	0.846253	NKX3-1	ENST00000396822.1|SNAI2|ENSG00000019549.4|snail family zinc finger 2
hg19_v2_chr1_-_32169920_32169988	0.843147	NKX3-1	ENST00000373672.3|COL16A1|ENSG00000084636.13|collagen, type XVI, alpha 1 	ENST00000373668.3|COL16A1|ENSG00000084636.13|collagen, type XVI, alpha 1
hg19_v2_chr1_-_32169761_32169776	0.828032	NKX3-1	ENST00000271069.6|COL16A1|ENSG00000084636.13|collagen, type XVI, alpha 1
hg19_v2_chr19_-_44174305_44174329	0.819685	NKX3-1	ENST00000601723.1|PLAUR|ENSG00000011422.7|plasminogen activator, urokinase receptor 	ENST00000339082.3|PLAUR|ENSG00000011422.7|plasminogen activator, urokinase receptor
hg19_v2_chr7_+_141463897_141463897	0.812789	NKX3-1	ENST00000247879.2|TAS2R3|ENSG00000127362.2|taste receptor, type 2, member 3
hg19_v2_chr3_+_98482175_98482197	0.811665	NKX3-1	ENST00000485391.1|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6 	ENST00000492254.1|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
hg19_v2_chrX_-_153637612_153637628	0.811146	NKX3-1	ENST00000369807.1|DNASE1L1|ENSG00000013563.9|deoxyribonuclease I-like 1 	ENST00000369808.3|DNASE1L1|ENSG00000013563.9|deoxyribonuclease I-like 1
hg19_v2_chr1_-_78444776_78444800	0.797367	NKX3-1	ENST00000370767.1|FUBP1|ENSG00000162613.12|far upstream element (FUSE) binding protein 1 	ENST00000421641.1|FUBP1|ENSG00000162613.12|far upstream element (FUSE) binding protein 1
hg19_v2_chr7_+_110731062_110731155	0.776034	NKX3-1	ENST00000308478.5|LRRN3|ENSG00000173114.8|leucine rich repeat neuronal 3 	ENST00000451085.1|LRRN3|ENSG00000173114.8|leucine rich repeat neuronal 3 	ENST00000422987.3|LRRN3|ENSG00000173114.8|leucine rich repeat neuronal 3 	ENST00000421101.1|LRRN3|ENSG00000173114.8|leucine rich repeat neuronal 3
hg19_v2_chr17_-_64187973_64188043	0.749497	NKX3-1	ENST00000583358.1|CEP112|ENSG00000154240.12|centrosomal protein 112kDa 	ENST00000392769.2|CEP112|ENSG00000154240.12|centrosomal protein 112kDa
hg19_v2_chr22_-_50523760_50523787	0.733216	NKX3-1	ENST00000395876.2|MLC1|ENSG00000100427.11|megalencephalic leukoencephalopathy with subcortical cysts 1
hg19_v2_chr6_+_26251835_26251879	0.726143	NKX3-1	ENST00000356350.2|HIST1H2BH|ENSG00000197459.2|histone cluster 1, H2bh
hg19_v2_chr4_+_37962018_37962056	0.718303	NKX3-1	ENST00000504686.1|PTTG2|ENSG00000250254.1|pituitary tumor-transforming 2
hg19_v2_chr11_-_101454658_101454671	0.712263	NKX3-1	ENST00000344327.3|TRPC6|ENSG00000137672.8|transient receptor potential cation channel, subfamily C, member 6
hg19_v2_chr21_-_46964306_46964332	0.709509	NKX3-1	ENST00000443742.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000528477.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000567670.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1
hg19_v2_chr12_+_6602517_6602559	0.705044	NKX3-1	ENST00000315579.5|NCAPD2|ENSG00000010292.8|non-SMC condensin I complex, subunit D2 	ENST00000539714.1|NCAPD2|ENSG00000010292.8|non-SMC condensin I complex, subunit D2
hg19_v2_chr4_-_90757364_90757396	0.699728	NKX3-1	ENST00000508895.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr17_-_55911970_55912121	0.698857	NKX3-1	ENST00000581805.1|RP11-60A24.3|ENSG00000265542.1|RP11-60A24.3	ENST00000580960.1|RP11-60A24.3|ENSG00000265542.1|RP11-60A24.3
hg19_v2_chr1_-_173793458_173793479	0.677403	NKX3-1	ENST00000356198.2|CENPL|ENSG00000120334.11|centromere protein L
hg19_v2_chr4_+_70916119_70916167	0.665934	NKX3-1	ENST00000246896.3|HTN1|ENSG00000126550.4|histatin 1 	ENST00000511674.1|HTN1|ENSG00000126550.4|histatin 1
hg19_v2_chr4_-_90756769_90756846	0.661994	NKX3-1	ENST00000345009.4|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000505199.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000502987.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr14_+_23654525_23654545	0.659563	NKX3-1	ENST00000399910.1|C14orf164|ENSG00000215277.4|chromosome 14 open reading frame 164 	ENST00000492621.1|C14orf164|ENSG00000215277.4|chromosome 14 open reading frame 164
hg19_v2_chr3_-_30936153_30936306	0.648744	NKX3-1	ENST00000454381.3|GADL1|ENSG00000144644.10|glutamate decarboxylase-like 1 	ENST00000282538.5|GADL1|ENSG00000144644.10|glutamate decarboxylase-like 1
hg19_v2_chr1_+_158223923_158223927	0.648718	NKX3-1	ENST00000289429.5|CD1A|ENSG00000158477.6|CD1a molecule
hg19_v2_chr17_-_37009882_37010096	0.645687	NKX3-1	ENST00000378096.3|RPL23|ENSG00000125691.8|ribosomal protein L23 	ENST00000394332.1|RPL23|ENSG00000125691.8|ribosomal protein L23 	ENST00000394333.1|RPL23|ENSG00000125691.8|ribosomal protein L23 	ENST00000577407.1|RPL23|ENSG00000125691.8|ribosomal protein L23 	ENST00000479035.2|RPL23|ENSG00000125691.8|ribosomal protein L23
hg19_v2_chr19_-_42931567_42931581	0.644109	NKX3-1	ENST00000244289.4|LIPE|ENSG00000079435.5|lipase, hormone-sensitive
hg19_v2_chr5_+_149877334_149877354	0.627337	NKX3-1	ENST00000523767.1|NDST1|ENSG00000070614.10|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
hg19_v2_chr14_-_47812321_47812438	0.619874	NKX3-1	ENST00000357362.3|MDGA2|ENSG00000139915.14|MAM domain containing glycosylphosphatidylinositol anchor 2 	ENST00000486952.2|MDGA2|ENSG00000139915.14|MAM domain containing glycosylphosphatidylinositol anchor 2 	ENST00000426342.1|MDGA2|ENSG00000139915.14|MAM domain containing glycosylphosphatidylinositol anchor 2
hg19_v2_chr1_-_120190396_120190396	0.614603	NKX3-1	ENST00000421812.2|ZNF697|ENSG00000143067.4|zinc finger protein 697
hg19_v2_chr16_+_3068393_3068446	0.613771	NKX3-1	ENST00000573001.1|TNFRSF12A|ENSG00000006327.9|tumor necrosis factor receptor superfamily, member 12A
hg19_v2_chr1_-_173793246_173793312	0.606848	NKX3-1	ENST00000345664.6|CENPL|ENSG00000120334.11|centromere protein L 	ENST00000367710.3|CENPL|ENSG00000120334.11|centromere protein L
hg19_v2_chr16_+_83986827_83986852	0.605856	NKX3-1	ENST00000393306.1|OSGIN1|ENSG00000140961.8|oxidative stress induced growth inhibitor 1 	ENST00000565123.1|OSGIN1|ENSG00000140961.8|oxidative stress induced growth inhibitor 1
hg19_v2_chr15_-_33360342_33360391	0.570282	NKX3-1	ENST00000558197.1|FMN1|ENSG00000248905.4|formin 1
hg19_v2_chrX_+_13671225_13671327	0.567844	NKX3-1	ENST00000545566.1|TCEANC|ENSG00000176896.7|transcription elongation factor A (SII) N-terminal and central domain containing 	ENST00000544987.1|TCEANC|ENSG00000176896.7|transcription elongation factor A (SII) N-terminal and central domain containing 	ENST00000314720.4|TCEANC|ENSG00000176896.7|transcription elongation factor A (SII) N-terminal and central domain containing
hg19_v2_chr17_+_80674559_80674663	0.560659	NKX3-1	ENST00000269373.6|FN3KRP|ENSG00000141560.10|fructosamine 3 kinase related protein 	ENST00000535965.1|FN3KRP|ENSG00000141560.10|fructosamine 3 kinase related protein 	ENST00000577128.1|FN3KRP|ENSG00000141560.10|fructosamine 3 kinase related protein 	ENST00000573158.1|FN3KRP|ENSG00000141560.10|fructosamine 3 kinase related protein
hg19_v2_chr8_-_101157680_101157680	0.55916	NKX3-1	ENST00000428847.2|FBXO43|ENSG00000156509.9|F-box protein 43
hg19_v2_chr15_-_55563072_55563135	0.543163	NKX3-1	ENST00000567380.1|RAB27A|ENSG00000069974.11|RAB27A, member RAS oncogene family 	ENST00000565972.1|RAB27A|ENSG00000069974.11|RAB27A, member RAS oncogene family 	ENST00000569493.1|RAB27A|ENSG00000069974.11|RAB27A, member RAS oncogene family
hg19_v2_chr7_+_135242652_135242689	0.536068	NKX3-1	ENST00000285968.6|NUP205|ENSG00000155561.10|nucleoporin 205kDa 	ENST00000440390.2|NUP205|ENSG00000155561.10|nucleoporin 205kDa
hg19_v2_chr12_+_96252706_96252789	0.530825	NKX3-1	ENST00000266735.5|SNRPF|ENSG00000139343.6|small nuclear ribonucleoprotein polypeptide F 	ENST00000553192.1|SNRPF|ENSG00000139343.6|small nuclear ribonucleoprotein polypeptide F 	ENST00000552085.1|SNRPF|ENSG00000139343.6|small nuclear ribonucleoprotein polypeptide F
hg19_v2_chr12_-_54978086_54978100	0.530781	NKX3-1	ENST00000553113.1|PPP1R1A|ENSG00000135447.12|protein phosphatase 1, regulatory (inhibitor) subunit 1A
hg19_v2_chr17_+_37824217_37824234	0.523329	NKX3-1	ENST00000394246.1|PNMT|ENSG00000141744.3|phenylethanolamine N-methyltransferase
hg19_v2_chr2_+_201994569_201994589	0.519422	NKX3-1	ENST00000457277.1|CFLAR|ENSG00000003402.15|CASP8 and FADD-like apoptosis regulator
hg19_v2_chr10_+_5406935_5406972	0.510184	NKX3-1	ENST00000380433.3|UCN3|ENSG00000178473.5|urocortin 3
hg19_v2_chr12_-_22063787_22063912	0.509775	NKX3-1	ENST00000544039.1|ABCC9|ENSG00000069431.6|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
hg19_v2_chr9_-_73477826_73477993	0.502919	NKX3-1	ENST00000396285.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000396292.4|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000396280.5|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000358082.3|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000408909.2|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377097.3|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr5_-_1799864_1799930	0.494145	NKX3-1	ENST00000510999.1|MRPL36|ENSG00000171421.8|mitochondrial ribosomal protein L36
hg19_v2_chr1_-_160616804_160616822	0.492083	NKX3-1	ENST00000538290.1|SLAMF1|ENSG00000117090.10|signaling lymphocytic activation molecule family member 1
hg19_v2_chr17_-_7307358_7307456	0.491025	NKX3-1	ENST00000576017.1|TMEM256|ENSG00000205544.3|transmembrane protein 256 	ENST00000535512.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000302422.3|TMEM256|ENSG00000205544.3|transmembrane protein 256
hg19_v2_chr10_+_18629628_18629672	0.483168	NKX3-1	ENST00000377329.4|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr12_-_127256772_127256813	0.481752	NKX3-1	ENST00000536517.1|LINC00944|ENSG00000256128.1|long intergenic non-protein coding RNA 944
hg19_v2_chr1_+_46972668_46972669	0.478122	NKX3-1	ENST00000371956.4|DMBX1|ENSG00000197587.6|diencephalon/mesencephalon homeobox 1 	ENST00000360032.3|DMBX1|ENSG00000197587.6|diencephalon/mesencephalon homeobox 1
hg19_v2_chr16_-_3068171_3068191	0.474895	NKX3-1	ENST00000572154.1|CLDN6|ENSG00000184697.6|claudin 6 	ENST00000328796.4|CLDN6|ENSG00000184697.6|claudin 6
hg19_v2_chr11_+_60995849_60995849	0.464153	NKX3-1	ENST00000537932.1|PGA4|ENSG00000229183.4|pepsinogen 4, group I (pepsinogen A)
hg19_v2_chr22_+_44577237_44577278	0.462429	NKX3-1	ENST00000415224.1|PARVG|ENSG00000138964.12|parvin, gamma 	ENST00000417767.1|PARVG|ENSG00000138964.12|parvin, gamma
hg19_v2_chr17_-_2966901_2966901	0.460024	NKX3-1	ENST00000575751.1|OR1D5|ENSG00000262628.1|olfactory receptor, family 1, subfamily D, member 5
hg19_v2_chr14_-_65409502_65409531	0.455648	NKX3-1	ENST00000389614.5|GPX2|ENSG00000176153.10|glutathione peroxidase 2 (gastrointestinal)
hg19_v2_chr3_+_158991025_158991083	0.439094	NKX3-1	ENST00000337808.6|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr17_+_37824411_37824516	0.433815	NKX3-1	ENST00000269582.2|PNMT|ENSG00000141744.3|phenylethanolamine N-methyltransferase
hg19_v2_chr5_+_96038476_96038517	0.432172	NKX3-1	ENST00000511049.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000309190.5|CAST|ENSG00000153113.19|calpastatin 	ENST00000510156.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000509903.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000511782.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000504465.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr6_+_26124373_26124431	0.430083	NKX3-1	ENST00000377791.2|HIST1H2AC|ENSG00000180573.8|histone cluster 1, H2ac 	ENST00000602637.1|HIST1H2AC|ENSG00000180573.8|histone cluster 1, H2ac
hg19_v2_chr14_-_106805716_106805716	0.422464	NKX3-1	ENST00000438142.2|IGHV4-31|ENSG00000231475.2|immunoglobulin heavy variable 4-31
hg19_v2_chr3_-_51813009_51813009	0.422443	NKX3-1	ENST00000398780.3|IQCF6|ENSG00000214686.3|IQ motif containing F6
hg19_v2_chr19_+_17186577_17186637	0.419346	NKX3-1	ENST00000595618.1|MYO9B|ENSG00000099331.9|myosin IXB 	ENST00000594824.1|MYO9B|ENSG00000099331.9|myosin IXB
hg19_v2_chr20_-_50722183_50722217	0.410912	NKX3-1	ENST00000371523.4|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr12_+_113354341_113354422	0.406748	NKX3-1	ENST00000553152.1|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr4_+_15376165_15376178	0.406167	NKX3-1	ENST00000382383.3|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7 	ENST00000429690.1|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7
hg19_v2_chr1_-_193029192_193029237	0.402972	NKX3-1	ENST00000417752.1|UCHL5|ENSG00000116750.9|ubiquitin carboxyl-terminal hydrolase L5 	ENST00000367452.4|UCHL5|ENSG00000116750.9|ubiquitin carboxyl-terminal hydrolase L5
hg19_v2_chr3_-_10334585_10334601	0.401846	NKX3-1	ENST00000430179.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000449238.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000437422.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000287656.7|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000457360.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000439975.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000446937.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide
hg19_v2_chr16_+_1832902_1833008	0.395487	NKX3-1	ENST00000262302.9|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000563136.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000565987.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000543305.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000568287.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000565134.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2
hg19_v2_chr10_+_120116527_120116620	0.390914	NKX3-1	ENST00000445161.1|LINC00867|ENSG00000232139.1|long intergenic non-protein coding RNA 867
hg19_v2_chr3_-_10334617_10334637	0.387844	NKX3-1	ENST00000429122.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000425479.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000335542.8|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide
hg19_v2_chr1_+_57320437_57320479	0.384708	NKX3-1	ENST00000361249.3|C8A|ENSG00000157131.10|complement component 8, alpha polypeptide
hg19_v2_chr8_+_30300119_30300137	0.381985	NKX3-1	ENST00000520191.1|RBPMS|ENSG00000157110.11|RNA binding protein with multiple splicing
hg19_v2_chr9_-_104145795_104145806	0.381925	NKX3-1	ENST00000259407.2|BAAT|ENSG00000136881.7|bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)
hg19_v2_chr19_+_50433476_50433510	0.375223	NKX3-1	ENST00000596658.1|ATF5|ENSG00000169136.4|activating transcription factor 5
hg19_v2_chr5_-_9903938_9903991	0.360328	NKX3-1	ENST00000511616.1|CTD-2143L24.1|ENSG00000249781.2|CTD-2143L24.1
hg19_v2_chr2_+_238877424_238877439	0.358872	NKX3-1	ENST00000434655.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative)
hg19_v2_chr12_-_39300071_39300097	0.35835	NKX3-1	ENST00000550863.1|CPNE8|ENSG00000139117.9|copine VIII
hg19_v2_chr3_+_139062838_139062881	0.347523	NKX3-1	ENST00000310776.4|MRPS22|ENSG00000175110.7|mitochondrial ribosomal protein S22 	ENST00000465056.1|MRPS22|ENSG00000175110.7|mitochondrial ribosomal protein S22 	ENST00000465373.1|MRPS22|ENSG00000175110.7|mitochondrial ribosomal protein S22
hg19_v2_chr3_-_39196049_39196062	0.346587	NKX3-1	ENST00000514182.1|CSRNP1|ENSG00000144655.10|cysteine-serine-rich nuclear protein 1
hg19_v2_chr7_+_150147711_150147733	0.34569	NKX3-1	ENST00000307271.3|GIMAP8|ENSG00000171115.3|GTPase, IMAP family member 8
hg19_v2_chr14_-_65409438_65409479	0.34547	NKX3-1	ENST00000557049.1|GPX2|ENSG00000176153.10|glutathione peroxidase 2 (gastrointestinal)
hg19_v2_chr1_+_173793777_173793829	0.342346	NKX3-1	ENST00000239457.5|DARS2|ENSG00000117593.8|aspartyl-tRNA synthetase 2, mitochondrial
hg19_v2_chr16_-_3074231_3074313	0.341927	NKX3-1	ENST00000572355.1|HCFC1R1|ENSG00000103145.6|host cell factor C1 regulator 1 (XPO1 dependent) 	ENST00000248089.3|HCFC1R1|ENSG00000103145.6|host cell factor C1 regulator 1 (XPO1 dependent) 	ENST00000574980.1|HCFC1R1|ENSG00000103145.6|host cell factor C1 regulator 1 (XPO1 dependent) 	ENST00000354679.3|HCFC1R1|ENSG00000103145.6|host cell factor C1 regulator 1 (XPO1 dependent) 	ENST00000396916.1|HCFC1R1|ENSG00000103145.6|host cell factor C1 regulator 1 (XPO1 dependent) 	ENST00000573842.1|HCFC1R1|ENSG00000103145.6|host cell factor C1 regulator 1 (XPO1 dependent)
hg19_v2_chr7_+_50348268_50348366	0.34169	NKX3-1	ENST00000438033.1|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000439701.1|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros)
hg19_v2_chr19_-_42006539_42006559	0.341626	NKX3-1	ENST00000597702.1|AC011526.1|ENSG00000267107.2|AC011526.1	ENST00000588495.1|AC011526.1|ENSG00000267107.2|AC011526.1	ENST00000595837.1|AC011526.1|ENSG00000267107.2|AC011526.1	ENST00000594315.1|AC011526.1|ENSG00000267107.2|AC011526.1
hg19_v2_chr5_+_150051149_150051323	0.336102	NKX3-1	ENST00000523553.1|MYOZ3|ENSG00000164591.9|myozenin 3
hg19_v2_chrX_-_24665353_24665382	0.334708	NKX3-1	ENST00000379144.2|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr11_+_8040739_8040815	0.334417	NKX3-1	ENST00000534099.1|TUB|ENSG00000166402.4|tubby bipartite transcription factor
hg19_v2_chr17_-_39661849_39661871	0.332333	NKX3-1	ENST00000246635.3|KRT13|ENSG00000171401.10|keratin 13 	ENST00000336861.3|KRT13|ENSG00000171401.10|keratin 13 	ENST00000587544.1|KRT13|ENSG00000171401.10|keratin 13 	ENST00000587435.1|KRT13|ENSG00000171401.10|keratin 13
hg19_v2_chr6_+_63921399_63921462	0.324722	NKX3-1	ENST00000356170.3|FKBP1C|ENSG00000198225.4|FK506 binding protein 1C
hg19_v2_chr15_+_58702742_58702777	0.320247	NKX3-1	ENST00000356113.6|LIPC|ENSG00000166035.6|lipase, hepatic 	ENST00000414170.3|LIPC|ENSG00000166035.6|lipase, hepatic
hg19_v2_chr3_+_39509070_39509101	0.317824	NKX3-1	ENST00000354668.4|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000428261.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000420739.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000415443.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000447324.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000383754.3|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chr10_+_32735030_32735110	0.313581	NKX3-1	ENST00000277657.6|CCDC7|ENSG00000216937.7|coiled-coil domain containing 7 	ENST00000362006.5|CCDC7|ENSG00000216937.7|coiled-coil domain containing 7
hg19_v2_chr4_+_88529681_88529681	0.313245	NKX3-1	ENST00000399271.1|DSPP|ENSG00000152591.8|dentin sialophosphoprotein
hg19_v2_chr17_-_295730_295730	0.309534	NKX3-1	ENST00000329099.4|FAM101B|ENSG00000183688.4|family with sequence similarity 101, member B
hg19_v2_chr11_+_60163918_60163983	0.308036	NKX3-1	ENST00000526375.1|MS4A14|ENSG00000166928.6|membrane-spanning 4-domains, subfamily A, member 14 	ENST00000531783.1|MS4A14|ENSG00000166928.6|membrane-spanning 4-domains, subfamily A, member 14 	ENST00000395001.1|MS4A14|ENSG00000166928.6|membrane-spanning 4-domains, subfamily A, member 14
hg19_v2_chr12_-_92536433_92536459	0.303117	NKX3-1	ENST00000551563.2|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000546975.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000549802.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79
hg19_v2_chr18_+_61144160_61144360	0.29785	NKX3-1	ENST00000489441.1|SERPINB5|ENSG00000206075.9|serpin peptidase inhibitor, clade B (ovalbumin), member 5 	ENST00000424602.1|SERPINB5|ENSG00000206075.9|serpin peptidase inhibitor, clade B (ovalbumin), member 5
hg19_v2_chr6_+_37321823_37321867	0.296401	NKX3-1	ENST00000487950.1|RNF8|ENSG00000112130.12|ring finger protein 8, E3 ubiquitin protein ligase 	ENST00000469731.1|RNF8|ENSG00000112130.12|ring finger protein 8, E3 ubiquitin protein ligase
hg19_v2_chr4_+_56719782_56719963	0.295738	NKX3-1	ENST00000381295.2|EXOC1|ENSG00000090989.13|exocyst complex component 1 	ENST00000346134.7|EXOC1|ENSG00000090989.13|exocyst complex component 1 	ENST00000349598.6|EXOC1|ENSG00000090989.13|exocyst complex component 1
hg19_v2_chr1_+_84873913_84873958	0.292294	NKX3-1	ENST00000370662.3|DNASE2B|ENSG00000137976.7|deoxyribonuclease II beta
hg19_v2_chr10_+_46994087_46994087	0.279197	NKX3-1	ENST00000374317.1|GPRIN2|ENSG00000204175.4|G protein regulated inducer of neurite outgrowth 2
hg19_v2_chr8_+_128426535_128426535	0.276752	NKX3-1	ENST00000465342.2|POU5F1B|ENSG00000212993.3|POU class 5 homeobox 1B
hg19_v2_chr1_-_110155671_110155685	0.276617	NKX3-1	ENST00000351050.3|GNAT2|ENSG00000134183.7|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2
hg19_v2_chr6_-_123958141_123958238	0.270791	NKX3-1	ENST00000334268.4|TRDN|ENSG00000186439.8|triadin
hg19_v2_chr8_-_16035454_16035497	0.265495	NKX3-1	ENST00000355282.2|MSR1|ENSG00000038945.10|macrophage scavenger receptor 1
hg19_v2_chr5_+_78407602_78407639	0.26539	NKX3-1	ENST00000274353.5|BHMT|ENSG00000145692.10|betaine--homocysteine S-methyltransferase 	ENST00000524080.1|BHMT|ENSG00000145692.10|betaine--homocysteine S-methyltransferase
hg19_v2_chr15_-_50558223_50558263	0.264641	NKX3-1	ENST00000267845.3|HDC|ENSG00000140287.6|histidine decarboxylase
hg19_v2_chr14_-_39417410_39417466	0.255424	NKX3-1	ENST00000557019.1|LINC00639|ENSG00000259070.1|long intergenic non-protein coding RNA 639 	ENST00000556116.1|LINC00639|ENSG00000259070.1|long intergenic non-protein coding RNA 639 	ENST00000554732.1|LINC00639|ENSG00000259070.1|long intergenic non-protein coding RNA 639
hg19_v2_chr11_-_101454234_101454255	0.253397	NKX3-1	ENST00000348423.4|TRPC6|ENSG00000137672.8|transient receptor potential cation channel, subfamily C, member 6 	ENST00000360497.4|TRPC6|ENSG00000137672.8|transient receptor potential cation channel, subfamily C, member 6 	ENST00000532133.1|TRPC6|ENSG00000137672.8|transient receptor potential cation channel, subfamily C, member 6
hg19_v2_chr16_-_20556492_20556492	0.252306	NKX3-1	ENST00000568098.1|ACSM2B|ENSG00000066813.10|acyl-CoA synthetase medium-chain family member 2B
hg19_v2_chr14_-_39417473_39417480	0.246919	NKX3-1	ENST00000553932.1|LINC00639|ENSG00000259070.1|long intergenic non-protein coding RNA 639
hg19_v2_chr5_-_150138551_150138671	0.244844	NKX3-1	ENST00000446090.2|DCTN4|ENSG00000132912.8|dynactin 4 (p62) 	ENST00000447998.2|DCTN4|ENSG00000132912.8|dynactin 4 (p62)
hg19_v2_chr11_+_65337901_65338153	0.241922	NKX3-1	ENST00000309328.3|SSSCA1|ENSG00000173465.3|Sjogren syndrome/scleroderma autoantigen 1 	ENST00000531405.1|SSSCA1|ENSG00000173465.3|Sjogren syndrome/scleroderma autoantigen 1 	ENST00000527920.1|SSSCA1|ENSG00000173465.3|Sjogren syndrome/scleroderma autoantigen 1 	ENST00000526877.1|SSSCA1|ENSG00000173465.3|Sjogren syndrome/scleroderma autoantigen 1 	ENST00000533115.1|SSSCA1|ENSG00000173465.3|Sjogren syndrome/scleroderma autoantigen 1 	ENST00000526433.1|SSSCA1|ENSG00000173465.3|Sjogren syndrome/scleroderma autoantigen 1
hg19_v2_chr16_+_89628778_89628803	0.241426	NKX3-1	ENST00000472354.1|RPL13|ENSG00000167526.9|ribosomal protein L13
hg19_v2_chr3_-_156840776_156840823	0.240112	NKX3-1	ENST00000471357.1|LINC00880|ENSG00000243629.1|long intergenic non-protein coding RNA 880
hg19_v2_chr17_+_66521936_66522026	0.24007	NKX3-1	ENST00000592800.1|PRKAR1A|ENSG00000108946.10|protein kinase, cAMP-dependent, regulatory, type I, alpha
hg19_v2_chr4_-_10118469_10118521	0.238984	NKX3-1	ENST00000499869.2|WDR1|ENSG00000071127.12|WD repeat domain 1
hg19_v2_chr6_-_26216872_26216895	0.23593	NKX3-1	ENST00000244601.3|HIST1H2BG|ENSG00000187990.4|histone cluster 1, H2bg
hg19_v2_chr1_-_22109682_22109719	0.233025	NKX3-1	ENST00000400301.1|USP48|ENSG00000090686.11|ubiquitin specific peptidase 48 	ENST00000532737.1|USP48|ENSG00000090686.11|ubiquitin specific peptidase 48
hg19_v2_chr3_+_39509163_39509180	0.230688	NKX3-1	ENST00000436143.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000441980.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000311042.6|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chrX_+_114795489_114795582	0.229311	NKX3-1	ENST00000355899.3|PLS3|ENSG00000102024.13|plastin 3 	ENST00000537301.1|PLS3|ENSG00000102024.13|plastin 3 	ENST00000289290.3|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr16_-_87970122_87970122	0.227628	NKX3-1	ENST00000309893.2|CA5A|ENSG00000174990.3|carbonic anhydrase VA, mitochondrial
hg19_v2_chr1_-_31538517_31538632	0.227028	NKX3-1	ENST00000440538.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000423018.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000424085.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000426105.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000257075.5|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373747.3|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000525843.1|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373742.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1
hg19_v2_chr7_-_138794394_138794473	0.22394	NKX3-1	ENST00000242351.5|ZC3HAV1|ENSG00000105939.8|zinc finger CCCH-type, antiviral 1 	ENST00000471652.1|ZC3HAV1|ENSG00000105939.8|zinc finger CCCH-type, antiviral 1
hg19_v2_chr8_-_93029520_93029591	0.220216	NKX3-1	ENST00000521553.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr1_-_216596738_216596796	0.217599	NKX3-1	ENST00000307340.3|USH2A|ENSG00000042781.8|Usher syndrome 2A (autosomal recessive, mild) 	ENST00000366943.2|USH2A|ENSG00000042781.8|Usher syndrome 2A (autosomal recessive, mild) 	ENST00000366942.3|USH2A|ENSG00000042781.8|Usher syndrome 2A (autosomal recessive, mild)
hg19_v2_chr6_+_26020672_26020718	0.216918	NKX3-1	ENST00000357647.3|HIST1H3A|ENSG00000198366.5|histone cluster 1, H3a
hg19_v2_chr7_+_100303676_100303719	0.216047	NKX3-1	ENST00000303151.4|POP7|ENSG00000172336.4|processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)
hg19_v2_chr20_+_123010_123152	0.213963	NKX3-1	ENST00000382398.3|DEFB126|ENSG00000125788.5|defensin, beta 126
hg19_v2_chr20_+_2795626_2795657	0.213542	NKX3-1	ENST00000603872.1|C20orf141|ENSG00000258713.2|chromosome 20 open reading frame 141 	ENST00000380589.4|C20orf141|ENSG00000258713.2|chromosome 20 open reading frame 141
hg19_v2_chr2_+_132160448_132160491	0.210974	NKX3-1	ENST00000437751.1|AC073869.19|ENSG00000223631.1|long intergenic non-protein coding RNA 1120
hg19_v2_chr16_+_33204156_33204156	0.210273	NKX3-1	ENST00000398667.4|TP53TG3C|ENSG00000205457.6|TP53 target 3C
hg19_v2_chrX_-_102757802_102757810	0.208185	NKX3-1	ENST00000372633.1|RAB40A|ENSG00000172476.3|RAB40A, member RAS oncogene family
hg19_v2_chr6_-_135271219_135271257	0.208151	NKX3-1	ENST00000367847.2|ALDH8A1|ENSG00000118514.9|aldehyde dehydrogenase 8 family, member A1 	ENST00000367845.2|ALDH8A1|ENSG00000118514.9|aldehyde dehydrogenase 8 family, member A1
hg19_v2_chr12_-_10562356_10562356	0.207422	NKX3-1	ENST00000309384.1|KLRC4|ENSG00000183542.4|killer cell lectin-like receptor subfamily C, member 4
hg19_v2_chr7_-_6865826_6865826	0.207106	NKX3-1	ENST00000538180.1|CCZ1B|ENSG00000146574.11|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)
hg19_v2_chr2_-_163008903_163008914	0.206368	NKX3-1	ENST00000418842.2|GCG|ENSG00000115263.10|glucagon 	ENST00000375497.3|GCG|ENSG00000115263.10|glucagon
hg19_v2_chr12_-_118628350_118628371	0.205111	NKX3-1	ENST00000537952.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000537822.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr4_-_48082192_48082207	0.2024	NKX3-1	ENST00000507351.1|TXK|ENSG00000074966.6|TXK tyrosine kinase
hg19_v2_chr5_-_77072085_77072139	0.200879	NKX3-1	ENST00000518338.2|TBCA|ENSG00000171530.9|tubulin folding cofactor A 	ENST00000520039.1|TBCA|ENSG00000171530.9|tubulin folding cofactor A 	ENST00000306388.6|TBCA|ENSG00000171530.9|tubulin folding cofactor A 	ENST00000520361.1|TBCA|ENSG00000171530.9|tubulin folding cofactor A
hg19_v2_chrX_-_31284974_31284993	0.200222	NKX3-1	ENST00000378702.4|DMD|ENSG00000198947.10|dystrophin
hg19_v2_chr11_+_7506713_7506773	0.198281	NKX3-1	ENST00000329293.3|OLFML1|ENSG00000183801.3|olfactomedin-like 1 	ENST00000534244.1|OLFML1|ENSG00000183801.3|olfactomedin-like 1
hg19_v2_chr19_+_56111680_56111735	0.197815	NKX3-1	ENST00000301073.3|ZNF524|ENSG00000171443.6|zinc finger protein 524
hg19_v2_chrX_-_31285018_31285028	0.197015	NKX3-1	ENST00000361471.4|DMD|ENSG00000198947.10|dystrophin
hg19_v2_chr17_-_29624343_29624429	0.196253	NKX3-1	ENST00000247271.4|OMG|ENSG00000126861.4|oligodendrocyte myelin glycoprotein
hg19_v2_chr14_-_59951112_59951148	0.195438	NKX3-1	ENST00000247194.4|L3HYPDH|ENSG00000126790.7|L-3-hydroxyproline dehydratase (trans-)
hg19_v2_chr5_-_1799932_1799960	0.193277	NKX3-1	ENST00000382647.7|MRPL36|ENSG00000171421.8|mitochondrial ribosomal protein L36 	ENST00000505059.2|MRPL36|ENSG00000171421.8|mitochondrial ribosomal protein L36
hg19_v2_chr6_+_108616054_108616100	0.190263	NKX3-1	ENST00000368977.4|LACE1|ENSG00000135537.12|lactation elevated 1
hg19_v2_chr12_+_22199108_22199199	0.18957	NKX3-1	ENST00000229329.2|CMAS|ENSG00000111726.8|cytidine monophosphate N-acetylneuraminic acid synthetase
hg19_v2_chr8_-_93029865_93029904	0.188786	NKX3-1	ENST00000422361.2|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr12_-_53045948_53045996	0.188611	NKX3-1	ENST00000309680.3|KRT2|ENSG00000172867.3|keratin 2
hg19_v2_chrX_-_31285042_31285103	0.18737	NKX3-1	ENST00000378680.2|DMD|ENSG00000198947.10|dystrophin 	ENST00000378723.3|DMD|ENSG00000198947.10|dystrophin
hg19_v2_chr3_+_100428188_100428222	0.183925	NKX3-1	ENST00000418917.2|TFG|ENSG00000114354.8|TRK-fused gene 	ENST00000490574.1|TFG|ENSG00000114354.8|TRK-fused gene
hg19_v2_chr5_-_176889381_176889432	0.182367	NKX3-1	ENST00000393563.4|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000512501.1|DBN1|ENSG00000113758.9|drebrin 1
hg19_v2_chr17_-_34257731_34257766	0.182264	NKX3-1	ENST00000431884.2|RDM1|ENSG00000187456.9|RAD52 motif 1 	ENST00000425909.3|RDM1|ENSG00000187456.9|RAD52 motif 1 	ENST00000394528.3|RDM1|ENSG00000187456.9|RAD52 motif 1 	ENST00000430160.2|RDM1|ENSG00000187456.9|RAD52 motif 1
hg19_v2_chr6_-_29324054_29324054	0.181639	NKX3-1	ENST00000543825.1|OR5V1|ENSG00000243729.3|olfactory receptor, family 5, subfamily V, member 1
hg19_v2_chr8_+_77593448_77593471	0.17862	NKX3-1	ENST00000521891.2|ZFHX4|ENSG00000091656.11|zinc finger homeobox 4
hg19_v2_chr2_+_173686303_173686325	0.176815	NKX3-1	ENST00000397087.3|RAPGEF4|ENSG00000091428.13|Rap guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr5_+_140723601_140723601	0.171713	NKX3-1	ENST00000253812.6|PCDHGA3|ENSG00000254245.1|protocadherin gamma subfamily A, 3
hg19_v2_chr10_-_91403625_91403649	0.169668	NKX3-1	ENST00000322191.6|PANK1|ENSG00000152782.12|pantothenate kinase 1 	ENST00000342512.3|PANK1|ENSG00000152782.12|pantothenate kinase 1 	ENST00000371774.2|PANK1|ENSG00000152782.12|pantothenate kinase 1
hg19_v2_chr1_-_153931052_153931124	0.168531	NKX3-1	ENST00000368630.3|CRTC2|ENSG00000160741.12|CREB regulated transcription coactivator 2 	ENST00000368633.1|CRTC2|ENSG00000160741.12|CREB regulated transcription coactivator 2
hg19_v2_chr7_+_5938351_5938379	0.16734	NKX3-1	ENST00000325974.6|CCZ1|ENSG00000122674.8|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
hg19_v2_chr6_+_149887377_149887430	0.165087	NKX3-1	ENST00000367419.5|GINM1|ENSG00000055211.8|glycoprotein integral membrane 1
hg19_v2_chr11_-_71791726_71791756	0.161242	NKX3-1	ENST00000393695.3|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr8_+_87878640_87878673	0.15976	NKX3-1	ENST00000518476.1|CNBD1|ENSG00000176571.7|cyclic nucleotide binding domain containing 1
hg19_v2_chr3_+_100428268_100428287	0.156717	NKX3-1	ENST00000240851.4|TFG|ENSG00000114354.8|TRK-fused gene
hg19_v2_chr17_+_7358889_7358913	0.156499	NKX3-1	ENST00000575379.1|CHRNB1|ENSG00000170175.6|cholinergic receptor, nicotinic, beta 1 (muscle)
hg19_v2_chr19_+_35396219_35396233	0.150549	NKX3-1	ENST00000595783.1|CTC-523E23.6|ENSG00000269037.1|CTC-523E23.6
hg19_v2_chr5_-_139937895_139937895	0.148817	NKX3-1	ENST00000336283.6|SRA1|ENSG00000213523.5|steroid receptor RNA activator 1
hg19_v2_chr19_+_17970693_17970741	0.148424	NKX3-1	ENST00000600147.1|RPL18A|ENSG00000105640.8|ribosomal protein L18a 	ENST00000599898.1|RPL18A|ENSG00000105640.8|ribosomal protein L18a
hg19_v2_chr11_+_114168085_114168222	0.145934	NKX3-1	ENST00000541754.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr19_+_17970677_17970686	0.143318	NKX3-1	ENST00000222247.5|RPL18A|ENSG00000105640.8|ribosomal protein L18a
hg19_v2_chr12_-_75603482_75603534	0.141405	NKX3-1	ENST00000341669.3|KCNC2|ENSG00000166006.8|potassium voltage-gated channel, Shaw-related subfamily, member 2 	ENST00000298972.1|KCNC2|ENSG00000166006.8|potassium voltage-gated channel, Shaw-related subfamily, member 2 	ENST00000350228.2|KCNC2|ENSG00000166006.8|potassium voltage-gated channel, Shaw-related subfamily, member 2
hg19_v2_chr12_+_70219052_70219096	0.14045	NKX3-1	ENST00000552032.2|MYRFL|ENSG00000166268.6|myelin regulatory factor-like 	ENST00000547771.2|MYRFL|ENSG00000166268.6|myelin regulatory factor-like
hg19_v2_chr17_+_42422637_42422655	0.139635	NKX3-1	ENST00000053867.3|GRN|ENSG00000030582.12|granulin 	ENST00000588143.1|GRN|ENSG00000030582.12|granulin
hg19_v2_chr18_+_29769978_29769989	0.139411	NKX3-1	ENST00000269202.6|MEP1B|ENSG00000141434.7|meprin A, beta 	ENST00000581447.1|MEP1B|ENSG00000141434.7|meprin A, beta
hg19_v2_chr6_+_43266063_43266097	0.138731	NKX3-1	ENST00000372574.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr7_+_5938386_5938433	0.138113	NKX3-1	ENST00000537980.1|CCZ1|ENSG00000122674.8|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
hg19_v2_chr18_-_3845293_3845318	0.137667	NKX3-1	ENST00000400145.2|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr14_-_60337684_60337834	0.136132	NKX3-1	ENST00000267484.5|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr16_+_30034655_30034722	0.134284	NKX3-1	ENST00000300575.2|C16orf92|ENSG00000167194.3|chromosome 16 open reading frame 92
hg19_v2_chr4_+_159131630_159131647	0.134051	NKX3-1	ENST00000504569.1|TMEM144|ENSG00000164124.6|transmembrane protein 144 	ENST00000509278.1|TMEM144|ENSG00000164124.6|transmembrane protein 144 	ENST00000514558.1|TMEM144|ENSG00000164124.6|transmembrane protein 144 	ENST00000503200.1|TMEM144|ENSG00000164124.6|transmembrane protein 144
hg19_v2_chr13_+_24883703_24883718	0.132512	NKX3-1	ENST00000332018.4|C1QTNF9|ENSG00000240654.2|C1q and tumor necrosis factor related protein 9
hg19_v2_chr6_-_135271260_135271272	0.131367	NKX3-1	ENST00000265605.2|ALDH8A1|ENSG00000118514.9|aldehyde dehydrogenase 8 family, member A1
hg19_v2_chr5_-_134783038_134783038	0.1313	NKX3-1	ENST00000503143.2|C5orf20|ENSG00000251380.2|chromosome 5 open reading frame 20
hg19_v2_chr3_+_156807663_156807677	0.129376	NKX3-1	ENST00000467995.1|LINC00881|ENSG00000241135.1|long intergenic non-protein coding RNA 881 	ENST00000474477.1|LINC00881|ENSG00000241135.1|long intergenic non-protein coding RNA 881 	ENST00000471719.1|LINC00881|ENSG00000241135.1|long intergenic non-protein coding RNA 881
hg19_v2_chr17_+_3100813_3100813	0.122366	NKX3-1	ENST00000381951.1|OR1A2|ENSG00000172150.4|olfactory receptor, family 1, subfamily A, member 2
hg19_v2_chr1_-_21377447_21377487	0.11927	NKX3-1	ENST00000374937.3|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000264211.8|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chrX_-_19688475_19688492	0.11856	NKX3-1	ENST00000541422.1|SH3KBP1|ENSG00000147010.13|SH3-domain kinase binding protein 1
hg19_v2_chr3_-_178976996_178976996	0.118009	NKX3-1	ENST00000485523.1|KCNMB3|ENSG00000171121.12|potassium large conductance calcium-activated channel, subfamily M beta member 3
hg19_v2_chr11_-_71823715_71823792	0.116551	NKX3-1	ENST00000545944.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000502597.2|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr2_+_64068844_64068997	0.113449	NKX3-1	ENST00000337130.5|UGP2|ENSG00000169764.10|UDP-glucose pyrophosphorylase 2
hg19_v2_chr6_-_22297730_22297730	0.112975	NKX3-1	ENST00000306482.1|PRL|ENSG00000172179.7|prolactin
hg19_v2_chr7_+_79765071_79765103	0.112586	NKX3-1	ENST00000457358.2|GNAI1|ENSG00000127955.11|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1
hg19_v2_chr1_-_35497506_35497574	0.112033	NKX3-1	ENST00000317538.5|ZMYM6|ENSG00000163867.12|zinc finger, MYM-type 6 	ENST00000373340.2|ZMYM6|ENSG00000163867.12|zinc finger, MYM-type 6 	ENST00000357182.4|ZMYM6|ENSG00000163867.12|zinc finger, MYM-type 6
hg19_v2_chr12_+_81110684_81110700	0.110524	NKX3-1	ENST00000228644.3|MYF5|ENSG00000111049.3|myogenic factor 5
hg19_v2_chr1_+_173793641_173793739	0.109286	NKX3-1	ENST00000361951.4|DARS2|ENSG00000117593.8|aspartyl-tRNA synthetase 2, mitochondrial
hg19_v2_chr6_-_144416737_144416766	0.108339	NKX3-1	ENST00000367569.2|SF3B5|ENSG00000169976.5|splicing factor 3b, subunit 5, 10kDa
hg19_v2_chr7_-_2883928_2883993	0.107889	NKX3-1	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr11_-_71823796_71823826	0.105159	NKX3-1	ENST00000545680.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000543587.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000538393.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535234.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000227618.4|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535503.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr3_+_119013185_119013306	0.102748	NKX3-1	ENST00000264245.4|ARHGAP31|ENSG00000031081.6|Rho GTPase activating protein 31
hg19_v2_chr11_+_8704748_8704792	0.100705	NKX3-1	ENST00000526562.1|RPL27A|ENSG00000166441.8|ribosomal protein L27a 	ENST00000525981.1|RPL27A|ENSG00000166441.8|ribosomal protein L27a
hg19_v2_chr17_+_42422662_42422678	0.0993314	NKX3-1	ENST00000593167.1|GRN|ENSG00000030582.12|granulin 	ENST00000585512.1|GRN|ENSG00000030582.12|granulin 	ENST00000591740.1|GRN|ENSG00000030582.12|granulin 	ENST00000592783.1|GRN|ENSG00000030582.12|granulin 	ENST00000587387.1|GRN|ENSG00000030582.12|granulin 	ENST00000588237.1|GRN|ENSG00000030582.12|granulin 	ENST00000589265.1|GRN|ENSG00000030582.12|granulin
hg19_v2_chr16_+_73420942_73420962	0.0985901	NKX3-1	ENST00000554640.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1	ENST00000562661.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1	ENST00000561875.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1
hg19_v2_chr5_-_1799965_1800009	0.0981329	NKX3-1	ENST00000508987.1|MRPL36|ENSG00000171421.8|mitochondrial ribosomal protein L36
hg19_v2_chrX_+_85403445_85403479	0.0947986	NKX3-1	ENST00000373131.1|DACH2|ENSG00000126733.16|dachshund homolog 2 (Drosophila)
hg19_v2_chr12_+_4829507_4829601	0.093371	NKX3-1	ENST00000252318.2|GALNT8|ENSG00000130035.2|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)
hg19_v2_chr6_-_159240415_159240444	0.0929865	NKX3-1	ENST00000367075.3|EZR|ENSG00000092820.13|ezrin
hg19_v2_chr12_+_60083118_60083157	0.0919675	NKX3-1	ENST00000261187.4|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000543448.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr11_-_19223523_19223589	0.0896757	NKX3-1	ENST00000265968.3|CSRP3|ENSG00000129170.4|cysteine and glycine-rich protein 3 (cardiac LIM protein)
hg19_v2_chr17_-_29641104_29641130	0.0887193	NKX3-1	ENST00000577894.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B 	ENST00000330927.4|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr2_-_55496344_55496391	0.0872141	NKX3-1	ENST00000403721.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000263629.4|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2
hg19_v2_chr3_+_100428316_100428471	0.0870137	NKX3-1	ENST00000479672.1|TFG|ENSG00000114354.8|TRK-fused gene 	ENST00000476228.1|TFG|ENSG00000114354.8|TRK-fused gene 	ENST00000463568.1|TFG|ENSG00000114354.8|TRK-fused gene
hg19_v2_chr12_+_96883347_96883400	0.0868673	NKX3-1	ENST00000524981.4|C12orf55|ENSG00000188596.5|chromosome 12 open reading frame 55 	ENST00000298953.3|C12orf55|ENSG00000188596.5|chromosome 12 open reading frame 55
hg19_v2_chr6_-_57087042_57087128	0.0862622	NKX3-1	ENST00000317483.3|RAB23|ENSG00000112210.7|RAB23, member RAS oncogene family
hg19_v2_chr16_+_69373323_69373371	0.084118	NKX3-1	ENST00000254940.5|NIP7|ENSG00000132603.9|NIP7, nucleolar pre-rRNA processing protein
hg19_v2_chr15_-_31393910_31393936	0.0807887	NKX3-1	ENST00000397795.2|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1 	ENST00000256552.6|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1 	ENST00000559179.1|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1
hg19_v2_chr9_-_139640458_139640474	0.0803466	NKX3-1	ENST00000476567.1|LCN6|ENSG00000267206.1|lipocalin 6
hg19_v2_chr19_+_52704346_52704452	0.0796478	NKX3-1	ENST00000462990.1|PPP2R1A|ENSG00000105568.13|protein phosphatase 2, regulatory subunit A, alpha
hg19_v2_chr3_+_52489503_52489540	0.0793357	NKX3-1	ENST00000345716.4|NISCH|ENSG00000010322.11|nischarin
hg19_v2_chr1_-_22109484_22109528	0.0772372	NKX3-1	ENST00000529637.1|USP48|ENSG00000090686.11|ubiquitin specific peptidase 48
hg19_v2_chr11_+_67798363_67798433	0.0751322	NKX3-1	ENST00000525628.1|NDUFS8|ENSG00000110717.6|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)
hg19_v2_chr17_-_29641084_29641103	0.0720797	NKX3-1	ENST00000544462.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chrX_+_85403487_85403625	0.072067	NKX3-1	ENST00000373125.4|DACH2|ENSG00000126733.16|dachshund homolog 2 (Drosophila)
hg19_v2_chr11_+_67798114_67798227	0.0703464	NKX3-1	ENST00000453471.2|NDUFS8|ENSG00000110717.6|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) 	ENST00000528492.1|NDUFS8|ENSG00000110717.6|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) 	ENST00000526339.1|NDUFS8|ENSG00000110717.6|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) 	ENST00000525419.1|NDUFS8|ENSG00000110717.6|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)
hg19_v2_chr20_-_45318051_45318118	0.0689836	NKX3-1	ENST00000372102.3|TP53RK|ENSG00000172315.5|TP53 regulating kinase
hg19_v2_chr2_-_55496174_55496334	0.0677624	NKX3-1	ENST00000417363.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000412530.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000394600.3|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000366137.2|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000420637.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2
hg19_v2_chr5_+_179125368_179125433	0.0676437	NKX3-1	ENST00000502296.1|CANX|ENSG00000127022.10|calnexin 	ENST00000504734.1|CANX|ENSG00000127022.10|calnexin 	ENST00000415618.2|CANX|ENSG00000127022.10|calnexin
hg19_v2_chr1_+_95616933_95616933	0.0595444	NKX3-1	ENST00000604203.1|RP11-57H12.6|ENSG00000271092.1|TMEM56-RWDD3 readthrough
hg19_v2_chr2_+_216974020_216974091	0.0565756	NKX3-1	ENST00000392132.2|XRCC5|ENSG00000079246.11|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) 	ENST00000417391.1|XRCC5|ENSG00000079246.11|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)
hg19_v2_chr20_-_49253425_49253427	0.0488017	NKX3-1	ENST00000045083.2|FAM65C|ENSG00000042062.7|family with sequence similarity 65, member C
hg19_v2_chr8_-_30706608_30706608	0.0478106	NKX3-1	ENST00000256246.2|TEX15|ENSG00000133863.2|testis expressed 15
hg19_v2_chr12_-_53298841_53298867	0.0477982	NKX3-1	ENST00000293308.6|KRT8|ENSG00000170421.7|keratin 8
hg19_v2_chr15_+_31196080_31196136	0.0466962	NKX3-1	ENST00000561607.1|FAN1|ENSG00000198690.5|FANCD2/FANCI-associated nuclease 1 	ENST00000565466.1|FAN1|ENSG00000198690.5|FANCD2/FANCI-associated nuclease 1
hg19_v2_chr5_+_79615790_79615827	0.0450848	NKX3-1	ENST00000296739.4|SPZ1|ENSG00000164299.5|spermatogenic leucine zipper 1
hg19_v2_chr11_+_67798090_67798101	0.036606	NKX3-1	ENST00000313468.5|NDUFS8|ENSG00000110717.6|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)
hg19_v2_chr13_+_27998681_27998826	0.0361801	NKX3-1	ENST00000381140.4|GTF3A|ENSG00000122034.8|general transcription factor IIIA
hg19_v2_chr6_-_82462425_82462491	0.0357179	NKX3-1	ENST00000369754.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000320172.6|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000369756.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A
hg19_v2_chr4_-_122791583_122791657	0.0256916	NKX3-1	ENST00000506636.1|BBS7|ENSG00000138686.5|Bardet-Biedl syndrome 7 	ENST00000264499.4|BBS7|ENSG00000138686.5|Bardet-Biedl syndrome 7
hg19_v2_chr1_+_151372010_151372055	0.0255409	NKX3-1	ENST00000290541.6|PSMB4|ENSG00000159377.6|proteasome (prosome, macropain) subunit, beta type, 4
hg19_v2_chr8_-_97247759_97247862	0.0225102	NKX3-1	ENST00000518406.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000523920.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000287022.5|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein
hg19_v2_chr4_-_46126093_46126106	0.0217452	NKX3-1	ENST00000295452.4|GABRG1|ENSG00000163285.7|gamma-aminobutyric acid (GABA) A receptor, gamma 1
hg19_v2_chr1_-_21113105_21113186	0.0183692	NKX3-1	ENST00000375000.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000419490.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000414993.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000443615.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000312239.5|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3
hg19_v2_chr2_-_27545921_27545981	0.0169148	NKX3-1	ENST00000402310.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000405983.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000403262.2|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000428910.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000402722.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000399052.4|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000380044.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000405076.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein
hg19_v2_chr5_+_34915444_34915481	0.016871	NKX3-1	ENST00000336767.5|BRIX1|ENSG00000113460.8|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)
hg19_v2_chr2_-_162931052_162931063	0.014003	NKX3-1	ENST00000360534.3|DPP4|ENSG00000197635.5|dipeptidyl-peptidase 4
hg19_v2_chr20_-_44144249_44144274	0.0106392	NKX3-1	ENST00000217428.6|SPINT3|ENSG00000101446.7|serine peptidase inhibitor, Kunitz type, 3
hg19_v2_chr9_-_111882195_111882255	0.00522759	NKX3-1	ENST00000374586.3|TMEM245|ENSG00000106771.8|transmembrane protein 245
hg19_v2_chr16_+_32264040_32264040	0.00444646	NKX3-1	ENST00000398664.3|TP53TG3D|ENSG00000205456.7|TP53 target 3D
hg19_v2_chr7_-_7680601_7680632	0.00426038	NKX3-1	ENST00000396682.2|RPA3|ENSG00000106399.7|replication protein A3, 14kDa
hg19_v2_chr19_-_42894420_42894451	0.00350972	NKX3-1	ENST00000597255.1|CNFN|ENSG00000105427.5|cornifelin 	ENST00000222032.5|CNFN|ENSG00000105427.5|cornifelin
hg19_v2_chr16_-_66864806_66864900	0.000771393	NKX3-1	ENST00000566336.1|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000394074.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000563185.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000359087.4|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000379463.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000565535.1|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000290810.3|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1
