hg19_v2_chr20_-_54967187_54967393	0.51939	MSX2	ENST00000422322.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000371356.2|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000451915.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000347343.2|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395911.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395907.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000441357.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000456249.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000420474.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395909.4|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395914.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000312783.6|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395915.3|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395913.3|AURKA|ENSG00000087586.13|aurora kinase A
hg19_v2_chr12_-_120315074_120315097	0.502119	MSX2	ENST00000261833.7|CIT|ENSG00000122966.9|citron (rho-interacting, serine/threonine kinase 21) 	ENST00000392521.2|CIT|ENSG00000122966.9|citron (rho-interacting, serine/threonine kinase 21)
hg19_v2_chr12_+_53662073_53662105	0.385638	MSX2	ENST00000553219.1|ESPL1|ENSG00000135476.7|extra spindle pole bodies homolog 1 (S. cerevisiae) 	ENST00000257934.4|ESPL1|ENSG00000135476.7|extra spindle pole bodies homolog 1 (S. cerevisiae)
hg19_v2_chr8_+_1993173_1993199	0.377706	MSX2	ENST00000523438.1|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr8_+_1993152_1993168	0.376174	MSX2	ENST00000262113.4|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr12_+_53662110_53662121	0.309352	MSX2	ENST00000552462.1|ESPL1|ENSG00000135476.7|extra spindle pole bodies homolog 1 (S. cerevisiae)
hg19_v2_chr17_-_38574169_38574202	0.257657	MSX2	ENST00000423485.1|TOP2A|ENSG00000131747.10|topoisomerase (DNA) II alpha 170kDa
hg19_v2_chr10_-_99447024_99447080	0.220252	MSX2	ENST00000370626.3|AVPI1|ENSG00000119986.6|arginine vasopressin-induced 1
hg19_v2_chr6_+_130339710_130339745	0.205061	MSX2	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr11_+_33061543_33061585	0.185004	MSX2	ENST00000432887.1|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1 	ENST00000528898.1|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1 	ENST00000531632.2|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1
hg19_v2_chr1_-_197115818_197115829	0.180549	MSX2	ENST00000367409.4|ASPM|ENSG00000066279.12|asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 	ENST00000294732.7|ASPM|ENSG00000066279.12|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
hg19_v2_chr6_+_53948328_53948338	0.175761	MSX2	ENST00000370876.2|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein
hg19_v2_chr1_-_232651312_232651312	0.175709	MSX2	ENST00000262861.4|SIPA1L2|ENSG00000116991.6|signal-induced proliferation-associated 1 like 2
hg19_v2_chr6_-_111927062_111927125	0.168181	MSX2	ENST00000359831.4|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr2_-_55646957_55647027	0.167294	MSX2	ENST00000263630.8|CCDC88A|ENSG00000115355.11|coiled-coil domain containing 88A
hg19_v2_chr2_-_55647057_55647082	0.161242	MSX2	ENST00000436346.1|CCDC88A|ENSG00000115355.11|coiled-coil domain containing 88A
hg19_v2_chr12_+_9102632_9102708	0.157885	MSX2	ENST00000539240.1|KLRG1|ENSG00000139187.5|killer cell lectin-like receptor subfamily G, member 1
hg19_v2_chr10_-_105110831_105110885	0.154507	MSX2	ENST00000337211.4|PCGF6|ENSG00000156374.10|polycomb group ring finger 6
hg19_v2_chr19_+_42817450_42817493	0.146923	MSX2	ENST00000301204.3|TMEM145|ENSG00000167619.7|transmembrane protein 145
hg19_v2_chr10_-_105110890_105110914	0.144717	MSX2	ENST00000369847.3|PCGF6|ENSG00000156374.10|polycomb group ring finger 6
hg19_v2_chr12_-_10022735_10022735	0.143116	MSX2	ENST00000228438.2|CLEC2B|ENSG00000110852.4|C-type lectin domain family 2, member B
hg19_v2_chr3_-_48672859_48672926	0.140201	MSX2	ENST00000395550.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000455886.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000431739.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000426599.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000383733.3|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000420764.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000337000.8|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6
hg19_v2_chr1_-_47779762_47779827	0.135568	MSX2	ENST00000371877.3|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000360380.3|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000337817.5|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000447475.2|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus
hg19_v2_chr19_-_47137942_47137942	0.128692	MSX2	ENST00000300873.4|GNG8|ENSG00000167414.4|guanine nucleotide binding protein (G protein), gamma 8
hg19_v2_chr16_+_58783542_58783581	0.124056	MSX2	ENST00000500117.1|RP11-410D17.2|ENSG00000245768.2|RP11-410D17.2	ENST00000565722.1|RP11-410D17.2|ENSG00000245768.2|RP11-410D17.2
hg19_v2_chr3_-_120003941_120004083	0.123388	MSX2	ENST00000464295.1|GPR156|ENSG00000175697.6|G protein-coupled receptor 156
hg19_v2_chr9_+_80912059_80912081	0.113329	MSX2	ENST00000347159.2|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1 	ENST00000376588.3|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1
hg19_v2_chr9_+_124329336_124329406	0.112609	MSX2	ENST00000394340.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein 	ENST00000436835.1|DAB2IP|ENSG00000136848.12|DAB2 interacting protein 	ENST00000259371.2|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr19_+_4007644_4007699	0.108682	MSX2	ENST00000262971.2|PIAS4|ENSG00000105229.2|protein inhibitor of activated STAT, 4
hg19_v2_chr6_-_111927449_111927482	0.107248	MSX2	ENST00000368761.5|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2 	ENST00000392556.4|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2 	ENST00000340026.6|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr7_+_99717230_99717321	0.105929	MSX2	ENST00000262932.3|CNPY4|ENSG00000166997.3|canopy FGF signaling regulator 4
hg19_v2_chr6_+_25652432_25652485	0.10499	MSX2	ENST00000377961.2|SCGN|ENSG00000079689.9|secretagogin, EF-hand calcium binding protein
hg19_v2_chr6_+_25652501_25652632	0.102101	MSX2	ENST00000334979.6|SCGN|ENSG00000079689.9|secretagogin, EF-hand calcium binding protein
hg19_v2_chr3_-_151034734_151034745	0.0992707	MSX2	ENST00000260843.4|GPR87|ENSG00000138271.4|G protein-coupled receptor 87
hg19_v2_chr9_+_34646624_34646649	0.0984372	MSX2	ENST00000450095.2|GALT|ENSG00000213930.7|galactose-1-phosphate uridylyltransferase 	ENST00000556278.1|GALT|ENSG00000258728.1|Uncharacterized protein
hg19_v2_chr20_+_54967409_54967501	0.097828	MSX2	ENST00000415828.1|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa 	ENST00000217109.4|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa 	ENST00000428552.1|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
hg19_v2_chr6_+_34204642_34204664	0.0952522	MSX2	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr8_-_12612962_12613049	0.0934053	MSX2	ENST00000398246.3|LONRF1|ENSG00000154359.8|LON peptidase N-terminal domain and ring finger 1
hg19_v2_chr3_-_112127981_112128034	0.0930425	MSX2	ENST00000486726.2|RP11-231E6.1|ENSG00000243081.2|RP11-231E6.1
hg19_v2_chr4_-_69536346_69536371	0.0902031	MSX2	ENST00000338206.5|UGT2B15|ENSG00000196620.4|UDP glucuronosyltransferase 2 family, polypeptide B15
hg19_v2_chr19_-_19249255_19249322	0.0878176	MSX2	ENST00000587583.2|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000450333.2|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000587096.1|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000162044.9|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000592369.1|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000587915.1|TMEM161A|ENSG00000064545.10|transmembrane protein 161A
hg19_v2_chrX_+_89176881_89176955	0.0874691	MSX2	ENST00000283891.5|TGIF2LX|ENSG00000153779.8|TGFB-induced factor homeobox 2-like, X-linked 	ENST00000561129.2|TGIF2LX|ENSG00000153779.8|TGFB-induced factor homeobox 2-like, X-linked
hg19_v2_chr16_-_29934558_29934641	0.0808733	MSX2	ENST00000568995.1|KCTD13|ENSG00000174943.5|potassium channel tetramerization domain containing 13 	ENST00000566413.1|KCTD13|ENSG00000174943.5|potassium channel tetramerization domain containing 13
hg19_v2_chr6_+_160183492_160183523	0.0801401	MSX2	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr15_-_37393406_37393528	0.078659	MSX2	ENST00000338564.5|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000558313.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000340545.5|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr17_+_74261277_74261292	0.077167	MSX2	ENST00000327490.6|UBALD2|ENSG00000185262.7|UBA-like domain containing 2
hg19_v2_chr1_-_68698222_68698266	0.0771233	MSX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr2_-_89292422_89292450	0.076075	MSX2	ENST00000495489.1|IGKV1-8|ENSG00000240671.1|immunoglobulin kappa variable 1-8
hg19_v2_chr1_-_94050668_94050724	0.0754963	MSX2	ENST00000539242.1|BCAR3|ENSG00000137936.12|breast cancer anti-estrogen resistance 3
hg19_v2_chr8_+_38831683_38831702	0.074196	MSX2	ENST00000302495.4|HTRA4|ENSG00000169495.4|HtrA serine peptidase 4
hg19_v2_chr5_+_95998070_95998179	0.0716188	MSX2	ENST00000421689.2|CAST|ENSG00000153113.19|calpastatin 	ENST00000510756.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000512620.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr19_+_41869894_41869961	0.0693631	MSX2	ENST00000413014.2|TMEM91|ENSG00000142046.10|transmembrane protein 91
hg19_v2_chr3_+_140396881_140396887	0.0667497	MSX2	ENST00000286349.3|TRIM42|ENSG00000155890.3|tripartite motif containing 42
hg19_v2_chr1_-_68698197_68698214	0.0643266	MSX2	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr21_-_32253874_32253899	0.063734	MSX2	ENST00000332378.4|KRTAP11-1|ENSG00000182591.4|keratin associated protein 11-1
hg19_v2_chr1_-_151431909_151431987	0.0593715	MSX2	ENST00000361398.3|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000271715.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr19_-_41985048_41985051	0.0592019	MSX2	ENST00000599801.1|AC011526.1|ENSG00000267107.2|AC011526.1	ENST00000595063.1|AC011526.1|ENSG00000267107.2|AC011526.1	ENST00000598215.1|AC011526.1|ENSG00000267107.2|AC011526.1
hg19_v2_chr3_+_147795932_147795948	0.0591677	MSX2	ENST00000490465.1|RP11-639B1.1|ENSG00000241131.1|RP11-639B1.1
hg19_v2_chr11_-_13517565_13517728	0.0572105	MSX2	ENST00000282091.1|PTH|ENSG00000152266.2|parathyroid hormone 	ENST00000529816.1|PTH|ENSG00000152266.2|parathyroid hormone
hg19_v2_chr9_+_34646651_34646689	0.0561954	MSX2	ENST00000378842.3|GALT|ENSG00000213930.7|galactose-1-phosphate uridylyltransferase
hg19_v2_chr5_+_150639360_150639450	0.0560885	MSX2	ENST00000523004.1|GM2A|ENSG00000196743.4|GM2 ganglioside activator
hg19_v2_chr12_-_9102549_9102591	0.0558676	MSX2	ENST00000000412.3|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chr1_-_190446759_190446774	0.0528149	MSX2	ENST00000367462.3|BRINP3|ENSG00000162670.8|bone morphogenetic protein/retinoic acid inducible neural-specific 3
hg19_v2_chr12_+_28410128_28410133	0.0520432	MSX2	ENST00000381259.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91 	ENST00000381256.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91
hg19_v2_chr10_-_99205607_99205779	0.0505692	MSX2	ENST00000477692.2|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000485122.2|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370886.5|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370885.4|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370902.3|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370884.5|EXOSC1|ENSG00000171311.8|exosome component 1
hg19_v2_chr2_+_187371440_187371567	0.049445	MSX2	ENST00000445547.1|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chr10_-_56560939_56560950	0.0488811	MSX2	ENST00000373955.1|PCDH15|ENSG00000150275.13|protocadherin-related 15
hg19_v2_chr18_-_44181442_44181479	0.0471873	MSX2	ENST00000398722.4|LOXHD1|ENSG00000167210.12|lipoxygenase homology domains 1
hg19_v2_chr15_+_41245160_41245347	0.0456014	MSX2	ENST00000444189.2|CHAC1|ENSG00000128965.7|ChaC, cation transport regulator homolog 1 (E. coli) 	ENST00000446533.3|CHAC1|ENSG00000128965.7|ChaC, cation transport regulator homolog 1 (E. coli)
hg19_v2_chr17_-_48785216_48785291	0.0453478	MSX2	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr18_-_48346298_48346391	0.0442625	MSX2	ENST00000398439.3|MRO|ENSG00000134042.8|maestro
hg19_v2_chr1_-_151431647_151431669	0.0427038	MSX2	ENST00000368863.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000409503.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000491586.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000533351.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000540984.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr14_+_32798547_32798606	0.0422701	MSX2	ENST00000557354.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557102.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557272.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr5_+_140797296_140797427	0.0418007	MSX2	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr17_-_10372875_10372876	0.0410648	MSX2	ENST00000255381.2|MYH4|ENSG00000264424.1|myosin, heavy chain 4, skeletal muscle
hg19_v2_chr10_-_56561022_56561051	0.0409899	MSX2	ENST00000373965.2|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000414778.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395438.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000409834.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395445.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395446.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395442.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395440.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395432.2|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000361849.3|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395433.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000320301.6|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395430.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000437009.1|PCDH15|ENSG00000150275.13|protocadherin-related 15
hg19_v2_chr4_+_71587669_71587752	0.0403129	MSX2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr14_+_32798462_32798539	0.0378418	MSX2	ENST00000280979.4|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr4_-_46126093_46126106	0.0373868	MSX2	ENST00000295452.4|GABRG1|ENSG00000163285.7|gamma-aminobutyric acid (GABA) A receptor, gamma 1
hg19_v2_chr17_+_74261413_74261452	0.036841	MSX2	ENST00000587913.1|UBALD2|ENSG00000185262.7|UBA-like domain containing 2
hg19_v2_chr5_-_31532160_31532221	0.0365682	MSX2	ENST00000511367.2|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III 	ENST00000513349.1|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III
hg19_v2_chr1_-_151965048_151965062	0.0347395	MSX2	ENST00000368809.1|S100A10|ENSG00000197747.4|S100 calcium binding protein A10
hg19_v2_chr20_+_56964169_56964182	0.0339506	MSX2	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr3_+_113251143_113251263	0.0331802	MSX2	ENST00000264852.4|SIDT1|ENSG00000072858.6|SID1 transmembrane family, member 1 	ENST00000393830.3|SIDT1|ENSG00000072858.6|SID1 transmembrane family, member 1
hg19_v2_chr7_+_134331550_134331593	0.0317347	MSX2	ENST00000344924.3|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase 	ENST00000418040.1|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase 	ENST00000393132.2|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase
hg19_v2_chr10_+_85954377_85954438	0.0310747	MSX2	ENST00000332904.3|CDHR1|ENSG00000148600.10|cadherin-related family member 1 	ENST00000372117.3|CDHR1|ENSG00000148600.10|cadherin-related family member 1
hg19_v2_chr8_+_9413410_9413451	0.0302223	MSX2	ENST00000520408.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000310430.6|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000522110.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
hg19_v2_chr7_-_99716952_99717021	0.030008	MSX2	ENST00000523306.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000344095.4|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000417349.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000493322.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000520135.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000418432.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000460673.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452041.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452438.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000451699.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000453269.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr20_-_50418947_50418964	0.0299284	MSX2	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr10_+_99205894_99205954	0.0293798	MSX2	ENST00000370854.3|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000393760.1|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000414567.1|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000370846.4|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16
hg19_v2_chr1_+_151735431_151735446	0.0291702	MSX2	ENST00000321531.5|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3 	ENST00000315067.8|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr7_-_56174161_56174269	0.0257535	MSX2	ENST00000395422.3|CHCHD2|ENSG00000106153.12|coiled-coil-helix-coiled-coil-helix domain containing 2
hg19_v2_chr20_-_50418972_50419029	0.0257097	MSX2	ENST00000395997.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr11_-_102323740_102323780	0.0254971	MSX2	ENST00000398136.2|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr10_+_99205959_99205981	0.0251665	MSX2	ENST00000352634.4|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000353979.3|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000370842.2|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000345745.5|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16
hg19_v2_chrX_+_113818545_113818566	0.0245048	MSX2	ENST00000371951.1|HTR2C|ENSG00000147246.5|5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled 	ENST00000276198.1|HTR2C|ENSG00000147246.5|5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled 	ENST00000371950.3|HTR2C|ENSG00000147246.5|5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled
hg19_v2_chr21_-_22175341_22175434	0.0238795	MSX2	ENST00000416768.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000452561.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000419299.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000437238.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320
hg19_v2_chr12_-_95397442_95397546	0.0226641	MSX2	ENST00000547157.1|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENST00000547986.1|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENST00000327772.2|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
hg19_v2_chr16_+_69345243_69345312	0.0216673	MSX2	ENST00000254950.11|VPS4A|ENSG00000132612.14|vacuolar protein sorting 4 homolog A (S. cerevisiae)
hg19_v2_chr4_-_69434245_69434245	0.0215571	MSX2	ENST00000317746.2|UGT2B17|ENSG00000197888.2|UDP glucuronosyltransferase 2 family, polypeptide B17
hg19_v2_chr5_+_31532373_31532479	0.0209972	MSX2	ENST00000325366.9|C5orf22|ENSG00000082213.13|chromosome 5 open reading frame 22 	ENST00000355907.3|C5orf22|ENSG00000082213.13|chromosome 5 open reading frame 22 	ENST00000507818.2|C5orf22|ENSG00000082213.13|chromosome 5 open reading frame 22
hg19_v2_chr10_-_72142345_72142395	0.0206752	MSX2	ENST00000373224.1|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000446961.1|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000358141.2|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000357631.2|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20
hg19_v2_chr1_-_228613026_228613065	0.0199806	MSX2	ENST00000366696.1|HIST3H3|ENSG00000168148.3|histone cluster 3, H3
hg19_v2_chr11_-_71823266_71823325	0.0198777	MSX2	ENST00000538919.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000539395.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000542531.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr18_+_5748793_5748820	0.0191902	MSX2	ENST00000566533.1|RP11-945C19.1|ENSG00000261738.2|RP11-945C19.1	ENST00000562452.2|RP11-945C19.1|ENSG00000261738.2|RP11-945C19.1
hg19_v2_chr9_-_95056010_95056038	0.0187354	MSX2	ENST00000443024.2|IARS|ENSG00000196305.13|isoleucyl-tRNA synthetase
hg19_v2_chr14_+_22670455_22670477	0.0185077	MSX2	ENST00000390460.1|TRAV26-2|ENSG00000211812.1|T cell receptor alpha variable 26-2
hg19_v2_chr2_+_90248739_90248739	0.0183263	MSX2	ENST00000468879.1|IGKV1D-43|ENSG00000242580.1|immunoglobulin kappa variable 1D-43
hg19_v2_chr7_-_100183742_100183781	0.0168256	MSX2	ENST00000310300.6|LRCH4|ENSG00000077454.11|leucine-rich repeats and calponin homology (CH) domain containing 4
hg19_v2_chr5_+_95997918_95998007	0.0165954	MSX2	ENST00000395812.2|CAST|ENSG00000153113.19|calpastatin 	ENST00000395813.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000359176.4|CAST|ENSG00000153113.19|calpastatin 	ENST00000325674.7|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr6_+_30687978_30688141	0.013905	MSX2	ENST00000327892.8|TUBB|ENSG00000196230.8|tubulin, beta class I 	ENST00000435534.1|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr5_+_66254698_66254885	0.0133566	MSX2	ENST00000405643.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000407621.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000432426.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr19_-_46088068_46088100	0.013295	MSX2	ENST00000263275.4|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 	ENST00000323060.3|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr14_-_23504337_23504369	0.0118467	MSX2	ENST00000361611.6|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr11_-_71823796_71823826	0.0113094	MSX2	ENST00000545680.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000543587.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000538393.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535234.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000227618.4|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535503.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr7_-_25268104_25268106	0.0111438	MSX2	ENST00000222674.2|NPVF|ENSG00000105954.2|neuropeptide VF precursor
hg19_v2_chr19_+_17378159_17378275	0.0101953	MSX2	ENST00000598188.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000359435.4|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000599474.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000599057.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000601043.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000447614.2|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1
hg19_v2_chr22_+_17956618_17956637	0.00828235	MSX2	ENST00000262608.8|CECR2|ENSG00000099954.14|cat eye syndrome chromosome region, candidate 2
hg19_v2_chr12_-_57039739_57039798	0.00796126	MSX2	ENST00000552959.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000551020.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000553007.2|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000552919.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000552104.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000262030.3|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
hg19_v2_chr19_+_17378278_17378311	0.00771862	MSX2	ENST00000596335.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000601436.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000595632.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1
hg19_v2_chr14_-_23504432_23504448	0.00737797	MSX2	ENST00000425762.2|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr11_+_67250490_67250527	0.00703496	MSX2	ENST00000528641.2|AIP|ENSG00000110711.5|aryl hydrocarbon receptor interacting protein 	ENST00000279146.3|AIP|ENSG00000110711.5|aryl hydrocarbon receptor interacting protein
hg19_v2_chr12_+_52695617_52695649	0.00697566	MSX2	ENST00000293525.5|KRT86|ENSG00000170442.7|keratin 86
hg19_v2_chr11_-_71823715_71823792	0.00558383	MSX2	ENST00000545944.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000502597.2|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr14_+_39736582_39736618	0.00532214	MSX2	ENST00000556148.1|CTAGE5|ENSG00000150527.12|CTAGE family, member 5 	ENST00000348007.3|CTAGE5|ENSG00000150527.12|CTAGE family, member 5
hg19_v2_chr4_-_46996424_46996424	0.00416315	MSX2	ENST00000264318.3|GABRA4|ENSG00000109158.6|gamma-aminobutyric acid (GABA) A receptor, alpha 4
hg19_v2_chr10_-_28571015_28571067	0.00403901	MSX2	ENST00000375719.3|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) 	ENST00000375732.1|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
hg19_v2_chr2_+_172864490_172864490	0.00375891	MSX2	ENST00000315796.4|METAP1D|ENSG00000172878.9|methionyl aminopeptidase type 1D (mitochondrial)
hg19_v2_chr9_-_4666421_4666492	0.00167591	MSX2	ENST00000381895.5|SPATA6L|ENSG00000106686.12|spermatogenesis associated 6-like
hg19_v2_chr7_-_99717463_99717483	0.00130002	MSX2	ENST00000437822.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
