hg19_v2_chr6_+_26240561_26240628	0.955237	MSX1	ENST00000377745.2|HIST1H4F|ENSG00000198327.3|histone cluster 1, H4f
hg19_v2_chr2_-_158345462_158345480	0.765944	MSX1	ENST00000439355.1|CYTIP|ENSG00000115165.5|cytohesin 1 interacting protein 	ENST00000540637.1|CYTIP|ENSG00000115165.5|cytohesin 1 interacting protein
hg19_v2_chr3_-_123339418_123339473	0.662854	MSX1	ENST00000583087.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr3_-_123339343_123339401	0.64951	MSX1	ENST00000578202.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr3_-_123512688_123512717	0.620056	MSX1	ENST00000475616.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr2_-_209028300_209028316	0.614132	MSX1	ENST00000304502.4|CRYGA|ENSG00000168582.4|crystallin, gamma A
hg19_v2_chr11_-_102496063_102496063	0.431132	MSX1	ENST00000260228.2|MMP20|ENSG00000137674.3|matrix metallopeptidase 20
hg19_v2_chr2_-_145278475_145278621	0.40755	MSX1	ENST00000558170.2|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr1_-_160492994_160493057	0.390281	MSX1	ENST00000368055.1|SLAMF6|ENSG00000162739.9|SLAM family member 6 	ENST00000368057.3|SLAMF6|ENSG00000162739.9|SLAM family member 6 	ENST00000368059.3|SLAMF6|ENSG00000162739.9|SLAM family member 6
hg19_v2_chr7_-_56101826_56101878	0.342231	MSX1	ENST00000421626.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase
hg19_v2_chr2_-_169746878_169746970	0.307244	MSX1	ENST00000282074.2|SPC25|ENSG00000152253.4|SPC25, NDC80 kinetochore complex component
hg19_v2_chrY_-_2655644_2655740	0.307022	MSX1	ENST00000525526.2|SRY|ENSG00000184895.6|sex determining region Y 	ENST00000534739.2|SRY|ENSG00000184895.6|sex determining region Y 	ENST00000383070.1|SRY|ENSG00000184895.6|sex determining region Y
hg19_v2_chr13_-_88323218_88323434	0.304277	MSX1	ENST00000436290.2|MIR4500HG|ENSG00000228824.2|MIR4500 host gene (non-protein coding) 	ENST00000453832.2|MIR4500HG|ENSG00000228824.2|MIR4500 host gene (non-protein coding) 	ENST00000606590.1|MIR4500HG|ENSG00000228824.2|MIR4500 host gene (non-protein coding)
hg19_v2_chr1_+_158985457_158985468	0.301669	MSX1	ENST00000567661.1|IFI16|ENSG00000163565.14|interferon, gamma-inducible protein 16 	ENST00000474473.1|IFI16|ENSG00000163565.14|interferon, gamma-inducible protein 16
hg19_v2_chr6_-_76072719_76072770	0.29699	MSX1	ENST00000370020.1|FILIP1|ENSG00000118407.10|filamin A interacting protein 1
hg19_v2_chr17_-_8113542_8113572	0.278535	MSX1	ENST00000578549.1|AURKB|ENSG00000178999.8|aurora kinase B 	ENST00000535053.1|AURKB|ENSG00000178999.8|aurora kinase B 	ENST00000582368.1|AURKB|ENSG00000178999.8|aurora kinase B
hg19_v2_chr10_-_29923893_29923907	0.267558	MSX1	ENST00000355867.4|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr21_+_33671264_33671283	0.258904	MSX1	ENST00000339944.4|MRAP|ENSG00000170262.8|melanocortin 2 receptor accessory protein
hg19_v2_chr10_+_17270214_17270258	0.252539	MSX1	ENST00000544301.1|VIM|ENSG00000026025.9|vimentin
hg19_v2_chr4_+_169013666_169013697	0.252106	MSX1	ENST00000359299.3|ANXA10|ENSG00000109511.6|annexin A10
hg19_v2_chr6_-_32784687_32784839	0.232182	MSX1	ENST00000447394.1|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta 	ENST00000438763.2|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta
hg19_v2_chr5_+_121465207_121465216	0.229061	MSX1	ENST00000296600.4|ZNF474|ENSG00000164185.4|zinc finger protein 474
hg19_v2_chr5_+_82767583_82767744	0.222688	MSX1	ENST00000512590.2|VCAN|ENSG00000038427.11|versican 	ENST00000513960.1|VCAN|ENSG00000038427.11|versican 	ENST00000513984.1|VCAN|ENSG00000038427.11|versican 	ENST00000502527.2|VCAN|ENSG00000038427.11|versican
hg19_v2_chr5_+_82767487_82767510	0.220665	MSX1	ENST00000343200.5|VCAN|ENSG00000038427.11|versican 	ENST00000342785.4|VCAN|ENSG00000038427.11|versican
hg19_v2_chr5_+_82767284_82767310	0.218337	MSX1	ENST00000265077.3|VCAN|ENSG00000038427.11|versican
hg19_v2_chr11_-_124190184_124190184	0.208093	MSX1	ENST00000357438.2|OR8D2|ENSG00000197263.2|olfactory receptor, family 8, subfamily D, member 2
hg19_v2_chr11_+_12766583_12766592	0.198687	MSX1	ENST00000361985.2|TEAD1|ENSG00000187079.10|TEA domain family member 1 (SV40 transcriptional enhancer factor)
hg19_v2_chr3_+_171561127_171561306	0.184894	MSX1	ENST00000334567.5|TMEM212|ENSG00000186329.5|transmembrane protein 212 	ENST00000450693.1|TMEM212|ENSG00000186329.5|transmembrane protein 212
hg19_v2_chr7_+_138818490_138818541	0.173069	MSX1	ENST00000430935.1|TTC26|ENSG00000105948.9|tetratricopeptide repeat domain 26 	ENST00000495038.1|TTC26|ENSG00000105948.9|tetratricopeptide repeat domain 26 	ENST00000474035.2|TTC26|ENSG00000105948.9|tetratricopeptide repeat domain 26 	ENST00000478836.2|TTC26|ENSG00000105948.9|tetratricopeptide repeat domain 26 	ENST00000464848.1|TTC26|ENSG00000105948.9|tetratricopeptide repeat domain 26 	ENST00000343187.4|TTC26|ENSG00000105948.9|tetratricopeptide repeat domain 26
hg19_v2_chr22_+_30477000_30477000	0.172827	MSX1	ENST00000403975.1|HORMAD2|ENSG00000176635.13|HORMA domain containing 2
hg19_v2_chr11_+_101785727_101785767	0.167797	MSX1	ENST00000263468.8|KIAA1377|ENSG00000110318.9|KIAA1377
hg19_v2_chr11_-_102401469_102401488	0.167355	MSX1	ENST00000260227.4|MMP7|ENSG00000137673.4|matrix metallopeptidase 7 (matrilysin, uterine)
hg19_v2_chr1_+_224370873_224370968	0.16734	MSX1	ENST00000323699.4|DEGS1|ENSG00000143753.8|delta(4)-desaturase, sphingolipid 1 	ENST00000391877.3|DEGS1|ENSG00000143753.8|delta(4)-desaturase, sphingolipid 1
hg19_v2_chr11_+_94245617_94245747	0.160542	MSX1	ENST00000542198.1|RP11-867G2.2|ENSG00000257057.1|long intergenic non-protein coding RNA 1171
hg19_v2_chr6_-_150212029_150212170	0.15713	MSX1	ENST00000529948.1|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000357183.4|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000367363.3|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E
hg19_v2_chr6_+_28249299_28249319	0.156838	MSX1	ENST00000405948.2|PGBD1|ENSG00000137338.4|piggyBac transposable element derived 1
hg19_v2_chr6_+_28249332_28249391	0.153113	MSX1	ENST00000259883.3|PGBD1|ENSG00000137338.4|piggyBac transposable element derived 1
hg19_v2_chr4_+_5526883_5526883	0.151868	MSX1	ENST00000195455.2|C4orf6|ENSG00000082929.4|chromosome 4 open reading frame 6
hg19_v2_chr12_-_52604607_52604639	0.151465	MSX1	ENST00000551894.1|C12orf80|ENSG00000257137.1|chromosome 12 open reading frame 80 	ENST00000553017.1|C12orf80|ENSG00000257137.1|chromosome 12 open reading frame 80
hg19_v2_chr3_+_108308513_108308558	0.149852	MSX1	ENST00000361582.3|DZIP3|ENSG00000198919.8|DAZ interacting zinc finger protein 3
hg19_v2_chr12_+_106751436_106751539	0.149499	MSX1	ENST00000228347.4|POLR3B|ENSG00000013503.5|polymerase (RNA) III (DNA directed) polypeptide B
hg19_v2_chr4_+_5527117_5527117	0.148662	MSX1	ENST00000505296.1|C4orf6|ENSG00000082929.4|chromosome 4 open reading frame 6
hg19_v2_chr10_+_32873190_32873190	0.128852	MSX1	ENST00000375025.4|C10orf68|ENSG00000150076.18|Homo sapiens coiled-coil domain containing 7 (CCDC7), transcript variant 5, mRNA.
hg19_v2_chr12_+_105380073_105380122	0.126973	MSX1	ENST00000552951.1|C12orf45|ENSG00000151131.5|chromosome 12 open reading frame 45 	ENST00000280749.5|C12orf45|ENSG00000151131.5|chromosome 12 open reading frame 45
hg19_v2_chr18_+_61637159_61637483	0.126011	MSX1	ENST00000397985.2|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000353706.2|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000542677.1|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000397988.3|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000448851.1|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8
hg19_v2_chr10_+_90346519_90346519	0.12438	MSX1	ENST00000371939.3|LIPJ|ENSG00000204022.5|lipase, family member J
hg19_v2_chr2_+_168675182_168675182	0.124026	MSX1	ENST00000305861.1|B3GALT1|ENSG00000172318.4|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
hg19_v2_chr19_-_53662257_53662319	0.120062	MSX1	ENST00000599096.1|ZNF347|ENSG00000197937.8|zinc finger protein 347 	ENST00000334197.7|ZNF347|ENSG00000197937.8|zinc finger protein 347 	ENST00000597183.1|ZNF347|ENSG00000197937.8|zinc finger protein 347 	ENST00000601804.1|ZNF347|ENSG00000197937.8|zinc finger protein 347 	ENST00000601469.2|ZNF347|ENSG00000197937.8|zinc finger protein 347 	ENST00000452676.2|ZNF347|ENSG00000197937.8|zinc finger protein 347
hg19_v2_chr4_-_100140331_100140409	0.11522	MSX1	ENST00000407820.2|ADH6|ENSG00000172955.13|alcohol dehydrogenase 6 (class V) 	ENST00000394897.1|ADH6|ENSG00000172955.13|alcohol dehydrogenase 6 (class V) 	ENST00000508558.1|ADH6|ENSG00000172955.13|alcohol dehydrogenase 6 (class V) 	ENST00000394899.2|ADH6|ENSG00000172955.13|alcohol dehydrogenase 6 (class V)
hg19_v2_chr15_-_76304731_76304785	0.114406	MSX1	ENST00000394907.3|NRG4|ENSG00000169752.12|neuregulin 4
hg19_v2_chr16_+_21689835_21689835	0.112227	MSX1	ENST00000286149.4|OTOA|ENSG00000155719.12|otoancorin 	ENST00000388958.3|OTOA|ENSG00000155719.12|otoancorin
hg19_v2_chr7_+_2636522_2636546	0.111468	MSX1	ENST00000423196.1|IQCE|ENSG00000106012.13|IQ motif containing E
hg19_v2_chr9_-_70465758_70465758	0.107894	MSX1	ENST00000489273.1|CBWD5|ENSG00000147996.12|COBW domain containing 5
hg19_v2_chr11_+_92085262_92085262	0.106337	MSX1	ENST00000298047.6|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000409404.2|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000541502.1|FAT3|ENSG00000165323.11|FAT atypical cadherin 3
hg19_v2_chr17_-_30228678_30228784	0.101299	MSX1	ENST00000261708.4|UTP6|ENSG00000108651.5|UTP6, small subunit (SSU) processome component, homolog (yeast)
hg19_v2_chr1_-_226595741_226595818	0.100145	MSX1	ENST00000366794.5|PARP1|ENSG00000143799.8|poly (ADP-ribose) polymerase 1 	ENST00000366792.1|PARP1|ENSG00000143799.8|poly (ADP-ribose) polymerase 1 	ENST00000366791.5|PARP1|ENSG00000143799.8|poly (ADP-ribose) polymerase 1
hg19_v2_chr5_-_138739739_138739793	0.0965692	MSX1	ENST00000514983.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000507779.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000451821.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000450845.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000509959.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000302091.5|SPATA24|ENSG00000170469.6|spermatogenesis associated 24
hg19_v2_chr4_+_113568207_113568367	0.0961069	MSX1	ENST00000511529.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr14_-_75389975_75390099	0.0949469	MSX1	ENST00000555647.1|RPS6KL1|ENSG00000198208.7|ribosomal protein S6 kinase-like 1 	ENST00000557413.1|RPS6KL1|ENSG00000198208.7|ribosomal protein S6 kinase-like 1
hg19_v2_chr6_+_108616243_108616405	0.0947408	MSX1	ENST00000421954.1|LACE1|ENSG00000135537.12|lactation elevated 1
hg19_v2_chr10_-_43892668_43892794	0.0931222	MSX1	ENST00000544000.1|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chr5_+_121647386_121647464	0.0921428	MSX1	ENST00000542191.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000506272.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000508681.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000509154.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr9_-_15510287_15510309	0.0911538	MSX1	ENST00000397519.2|PSIP1|ENSG00000164985.10|PC4 and SFRS1 interacting protein 1
hg19_v2_chr1_+_76540386_76540445	0.0899685	MSX1	ENST00000328299.3|ST6GALNAC3|ENSG00000184005.9|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
hg19_v2_chr14_+_31046959_31046972	0.0879889	MSX1	ENST00000547532.1|G2E3|ENSG00000092140.10|G2/M-phase specific E3 ubiquitin protein ligase 	ENST00000555429.1|G2E3|ENSG00000092140.10|G2/M-phase specific E3 ubiquitin protein ligase
hg19_v2_chr7_-_32338917_32338946	0.087056	MSX1	ENST00000396193.1|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa
hg19_v2_chr22_-_32766972_32766996	0.0852496	MSX1	ENST00000382084.4|RFPL3S|ENSG00000205853.6|RFPL3 antisense 	ENST00000382086.2|RFPL3S|ENSG00000205853.6|RFPL3 antisense
hg19_v2_chr19_-_39805976_39805976	0.0837931	MSX1	ENST00000248668.4|LRFN1|ENSG00000128011.4|leucine rich repeat and fibronectin type III domain containing 1
hg19_v2_chr6_+_108616054_108616100	0.0823204	MSX1	ENST00000368977.4|LACE1|ENSG00000135537.12|lactation elevated 1
hg19_v2_chr1_-_2461684_2461710	0.0804126	MSX1	ENST00000378453.3|HES5|ENSG00000197921.5|hes family bHLH transcription factor 5
hg19_v2_chr11_+_61197508_61197545	0.0802144	MSX1	ENST00000541135.1|RP11-286N22.8|ENSG00000256591.1|Uncharacterized protein  	ENST00000301761.2|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2
hg19_v2_chr19_+_3762703_3762719	0.0789809	MSX1	ENST00000589174.1|MRPL54|ENSG00000183617.4|mitochondrial ribosomal protein L54
hg19_v2_chr10_+_135050908_135050908	0.0783961	MSX1	ENST00000325980.9|VENTX|ENSG00000151650.7|VENT homeobox
hg19_v2_chr6_+_136172820_136172846	0.0783174	MSX1	ENST00000308191.6|PDE7B|ENSG00000171408.9|phosphodiesterase 7B
hg19_v2_chr9_-_128246769_128246780	0.0779249	MSX1	ENST00000444226.1|MAPKAP1|ENSG00000119487.12|mitogen-activated protein kinase associated protein 1
hg19_v2_chr13_-_47471155_47471214	0.0745601	MSX1	ENST00000543956.1|HTR2A|ENSG00000102468.6|5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled 	ENST00000542664.1|HTR2A|ENSG00000102468.6|5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled
hg19_v2_chr13_-_38172863_38172981	0.0742453	MSX1	ENST00000541481.1|POSTN|ENSG00000133110.10|periostin, osteoblast specific factor 	ENST00000379743.4|POSTN|ENSG00000133110.10|periostin, osteoblast specific factor 	ENST00000379742.4|POSTN|ENSG00000133110.10|periostin, osteoblast specific factor 	ENST00000379749.4|POSTN|ENSG00000133110.10|periostin, osteoblast specific factor 	ENST00000541179.1|POSTN|ENSG00000133110.10|periostin, osteoblast specific factor 	ENST00000379747.4|POSTN|ENSG00000133110.10|periostin, osteoblast specific factor
hg19_v2_chr22_-_32767017_32767063	0.0740218	MSX1	ENST00000400234.1|RFPL3S|ENSG00000205853.6|RFPL3 antisense
hg19_v2_chr11_-_5345582_5345582	0.0687159	MSX1	ENST00000328813.2|OR51B2|ENSG00000184881.2|olfactory receptor, family 51, subfamily B, member 2
hg19_v2_chr14_+_55494323_55494345	0.0677604	MSX1	ENST00000339298.2|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4
hg19_v2_chr2_-_77749474_77749518	0.0673682	MSX1	ENST00000409093.1|LRRTM4|ENSG00000176204.9|leucine rich repeat transmembrane neuronal 4 	ENST00000409088.3|LRRTM4|ENSG00000176204.9|leucine rich repeat transmembrane neuronal 4
hg19_v2_chr4_+_159443024_159443056	0.0660628	MSX1	ENST00000448688.2|RXFP1|ENSG00000171509.11|relaxin/insulin-like family peptide receptor 1
hg19_v2_chr11_+_61197572_61197620	0.0658706	MSX1	ENST00000542074.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2 	ENST00000534878.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2 	ENST00000537782.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2 	ENST00000543265.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2
hg19_v2_chr19_+_3762645_3762690	0.0656118	MSX1	ENST00000330133.4|MRPL54|ENSG00000183617.4|mitochondrial ribosomal protein L54
hg19_v2_chr1_+_202091980_202091991	0.0645444	MSX1	ENST00000367282.5|GPR37L1|ENSG00000170075.8|G protein-coupled receptor 37 like 1
hg19_v2_chr12_-_10541575_10541616	0.0626483	MSX1	ENST00000540818.1|KLRK1|ENSG00000213809.4|killer cell lectin-like receptor subfamily K, member 1
hg19_v2_chr3_-_190040223_190040264	0.0601791	MSX1	ENST00000295522.3|CLDN1|ENSG00000163347.5|claudin 1
hg19_v2_chr8_+_97597148_97597173	0.0593161	MSX1	ENST00000521590.1|SDC2|ENSG00000169439.7|syndecan 2
hg19_v2_chr5_-_75919253_75919269	0.0565543	MSX1	ENST00000296641.4|F2RL2|ENSG00000164220.6|coagulation factor II (thrombin) receptor-like 2
hg19_v2_chr4_+_119810134_119810192	0.0552233	MSX1	ENST00000434046.2|SYNPO2|ENSG00000172403.6|synaptopodin 2
hg19_v2_chr15_-_77712477_77712499	0.0550949	MSX1	ENST00000560626.2|PEAK1|ENSG00000173517.6|pseudopodium-enriched atypical kinase 1
hg19_v2_chr5_-_75919217_75919250	0.0545251	MSX1	ENST00000504899.1|F2RL2|ENSG00000164220.6|coagulation factor II (thrombin) receptor-like 2
hg19_v2_chr9_+_44868935_44868935	0.0540534	MSX1	ENST00000448436.2|RP11-160N1.10|ENSG00000204814.5|RP11-160N1.10
hg19_v2_chr6_+_29141311_29141311	0.0531135	MSX1	ENST00000377167.2|OR2J2|ENSG00000204700.3|olfactory receptor, family 2, subfamily J, member 2
hg19_v2_chr21_+_17792672_17792775	0.0517322	MSX1	ENST00000602620.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr8_-_72274095_72274116	0.0500586	MSX1	ENST00000303824.7|EYA1|ENSG00000104313.13|eyes absent homolog 1 (Drosophila)
hg19_v2_chr19_+_55043977_55044008	0.0498361	MSX1	ENST00000335056.3|KIR3DX1|ENSG00000104970.6|killer cell immunoglobulin-like receptor, three domains, X1
hg19_v2_chr20_+_56964169_56964182	0.0488791	MSX1	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr2_-_136288113_136288301	0.0481574	MSX1	ENST00000401392.1|ZRANB3|ENSG00000121988.13|zinc finger, RAN-binding domain containing 3
hg19_v2_chrX_+_1710484_1710537	0.0477737	MSX1	ENST00000313871.3|AKAP17A|ENSG00000197976.6|A kinase (PRKA) anchor protein 17A 	ENST00000381261.3|AKAP17A|ENSG00000197976.6|A kinase (PRKA) anchor protein 17A
hg19_v2_chr12_+_54422142_54422239	0.0459282	MSX1	ENST00000243108.4|HOXC6|ENSG00000197757.7|homeobox C6
hg19_v2_chr11_+_12132117_12132160	0.045077	MSX1	ENST00000256194.4|MICAL2|ENSG00000133816.9|microtubule associated monooxygenase, calponin and LIM domain containing 2
hg19_v2_chr13_-_52733980_52734002	0.0450316	MSX1	ENST00000339406.3|NEK3|ENSG00000136098.12|NIMA-related kinase 3
hg19_v2_chr19_-_7812446_7812473	0.0449889	MSX1	ENST00000394173.4|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000301357.8|CD209|ENSG00000090659.13|CD209 molecule
hg19_v2_chr20_+_5731027_5731055	0.043311	MSX1	ENST00000378979.4|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196 	ENST00000303142.6|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196
hg19_v2_chr14_+_55493920_55494013	0.0428542	MSX1	ENST00000395472.2|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4 	ENST00000555846.1|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4
hg19_v2_chr8_+_24241789_24241802	0.0415342	MSX1	ENST00000256412.4|ADAMDEC1|ENSG00000134028.10|ADAM-like, decysin 1 	ENST00000538205.1|ADAMDEC1|ENSG00000134028.10|ADAM-like, decysin 1
hg19_v2_chr18_-_47721447_47721474	0.0379098	MSX1	ENST00000285039.7|MYO5B|ENSG00000167306.14|myosin VB
hg19_v2_chr20_+_56964253_56964369	0.0378794	MSX1	ENST00000395802.3|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr9_+_115913222_115913266	0.0369895	MSX1	ENST00000259392.3|SLC31A2|ENSG00000136867.6|solute carrier family 31 (copper transporter), member 2
hg19_v2_chr12_-_82752565_82752579	0.0363559	MSX1	ENST00000256151.7|CCDC59|ENSG00000133773.7|coiled-coil domain containing 59
hg19_v2_chr6_+_131894284_131894378	0.0357425	MSX1	ENST00000368087.3|ARG1|ENSG00000118520.9|arginase 1 	ENST00000356962.2|ARG1|ENSG00000118520.9|arginase 1
hg19_v2_chr1_-_54405773_54405874	0.0349834	MSX1	ENST00000371376.1|HSPB11|ENSG00000081870.7|heat shock protein family B (small), member 11
hg19_v2_chr14_+_22964877_22964914	0.0338563	MSX1	ENST00000390494.1|TRAJ43|ENSG00000211846.1|T cell receptor alpha joining 43
hg19_v2_chr3_+_93781728_93781760	0.0318932	MSX1	ENST00000314622.4|NSUN3|ENSG00000178694.5|NOP2/Sun domain family, member 3
hg19_v2_chr19_+_16059818_16059818	0.0316795	MSX1	ENST00000322107.1|OR10H4|ENSG00000176231.1|olfactory receptor, family 10, subfamily H, member 4
hg19_v2_chr4_-_164534657_164534701	0.0311552	MSX1	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr7_+_148287657_148287657	0.03086	MSX1	ENST00000307003.2|C7orf33|ENSG00000170279.2|chromosome 7 open reading frame 33
hg19_v2_chr19_-_20150014_20150085	0.0298738	MSX1	ENST00000358523.5|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000397162.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000601100.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr9_+_75229616_75229616	0.029691	MSX1	ENST00000340019.3|TMC1|ENSG00000165091.11|transmembrane channel-like 1
hg19_v2_chr19_+_18303992_18304039	0.0291018	MSX1	ENST00000599612.2|MPV17L2|ENSG00000254858.5|MPV17 mitochondrial membrane protein-like 2
hg19_v2_chr12_-_10978957_10978957	0.0284177	MSX1	ENST00000240619.2|TAS2R10|ENSG00000121318.2|taste receptor, type 2, member 10
hg19_v2_chr12_-_11150474_11150474	0.0281376	MSX1	ENST00000538986.1|TAS2R20|ENSG00000255837.1|taste receptor, type 2, member 20
hg19_v2_chr7_+_23338819_23338973	0.0272056	MSX1	ENST00000466681.1|MALSU1|ENSG00000156928.4|mitochondrial assembly of ribosomal large subunit 1
hg19_v2_chr8_+_24241969_24241999	0.0269566	MSX1	ENST00000522298.1|ADAMDEC1|ENSG00000134028.10|ADAM-like, decysin 1
hg19_v2_chr6_-_109777128_109777203	0.0267452	MSX1	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr5_-_137475071_137475122	0.0255647	MSX1	ENST00000265191.2|NME5|ENSG00000112981.3|NME/NM23 family member 5
hg19_v2_chr7_-_20256965_20257034	0.024416	MSX1	ENST00000400331.5|MACC1|ENSG00000183742.8|metastasis associated in colon cancer 1 	ENST00000332878.4|MACC1|ENSG00000183742.8|metastasis associated in colon cancer 1
hg19_v2_chr20_+_5731083_5731100	0.0232067	MSX1	ENST00000445603.1|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196 	ENST00000442185.1|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196
hg19_v2_chr19_-_7812397_7812426	0.0231342	MSX1	ENST00000593660.1|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000354397.6|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000593821.1|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000602261.1|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000315591.8|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000394161.5|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000204801.8|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000601256.1|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000601951.1|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000315599.7|CD209|ENSG00000090659.13|CD209 molecule
hg19_v2_chrX_-_14891150_14891201	0.0229268	MSX1	ENST00000452869.1|FANCB|ENSG00000181544.9|Fanconi anemia, complementation group B 	ENST00000398334.1|FANCB|ENSG00000181544.9|Fanconi anemia, complementation group B 	ENST00000324138.3|FANCB|ENSG00000181544.9|Fanconi anemia, complementation group B
hg19_v2_chr3_-_47555167_47555251	0.0209018	MSX1	ENST00000296149.4|ELP6|ENSG00000163832.11|elongator acetyltransferase complex subunit 6
hg19_v2_chr11_-_92931098_92931173	0.0197724	MSX1	ENST00000326402.4|SLC36A4|ENSG00000180773.10|solute carrier family 36 (proton/amino acid symporter), member 4
hg19_v2_chr14_+_77582905_77582916	0.0190556	MSX1	ENST00000557408.1|TMEM63C|ENSG00000165548.6|transmembrane protein 63C
hg19_v2_chr3_-_21792838_21792927	0.0185132	MSX1	ENST00000281523.2|ZNF385D|ENSG00000151789.5|zinc finger protein 385D
hg19_v2_chr4_+_159442878_159442977	0.0179367	MSX1	ENST00000307765.5|RXFP1|ENSG00000171509.11|relaxin/insulin-like family peptide receptor 1 	ENST00000423548.1|RXFP1|ENSG00000171509.11|relaxin/insulin-like family peptide receptor 1
hg19_v2_chrX_+_73164149_73164166	0.0158749	MSX1	ENST00000602938.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602294.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602920.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602737.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602772.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding)
hg19_v2_chr2_+_242498135_242498136	0.0154105	MSX1	ENST00000318407.3|BOK|ENSG00000176720.3|BCL2-related ovarian killer
hg19_v2_chr4_+_119809984_119810024	0.0151756	MSX1	ENST00000307142.4|SYNPO2|ENSG00000172403.6|synaptopodin 2 	ENST00000448416.2|SYNPO2|ENSG00000172403.6|synaptopodin 2 	ENST00000429713.2|SYNPO2|ENSG00000172403.6|synaptopodin 2
hg19_v2_chr18_-_70532906_70532934	0.0150233	MSX1	ENST00000299430.2|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1 	ENST00000397929.1|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1
hg19_v2_chr6_-_84419101_84419127	0.0149436	MSX1	ENST00000520302.1|SNAP91|ENSG00000065609.10|synaptosomal-associated protein, 91kDa 	ENST00000520213.1|SNAP91|ENSG00000065609.10|synaptosomal-associated protein, 91kDa 	ENST00000439399.2|SNAP91|ENSG00000065609.10|synaptosomal-associated protein, 91kDa 	ENST00000428679.2|SNAP91|ENSG00000065609.10|synaptosomal-associated protein, 91kDa 	ENST00000437520.1|SNAP91|ENSG00000065609.10|synaptosomal-associated protein, 91kDa
hg19_v2_chr4_-_57547454_57547469	0.0146708	MSX1	ENST00000556376.2|HOPX|ENSG00000171476.17|HOP homeobox
hg19_v2_chr10_+_135204338_135204338	0.0140449	MSX1	ENST00000468317.2|RP11-108K14.8|ENSG00000254536.1|Mitochondrial GTPase 1
hg19_v2_chr9_-_86593238_86593367	0.0138749	MSX1	ENST00000351839.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr7_+_7811992_7811992	0.0130935	MSX1	ENST00000406829.1|RPA3-AS1|ENSG00000219545.5|RPA3 antisense RNA 1
hg19_v2_chr8_+_117963190_117963224	0.012941	MSX1	ENST00000427715.2|SLC30A8|ENSG00000164756.8|solute carrier family 30 (zinc transporter), member 8
hg19_v2_chr7_+_16793160_16793160	0.0127873	MSX1	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr17_-_5321549_5321549	0.0117786	MSX1	ENST00000572809.1|NUP88|ENSG00000108559.7|nucleoporin 88kDa
hg19_v2_chr3_+_114012819_114012833	0.0101676	MSX1	ENST00000383671.3|TIGIT|ENSG00000181847.7|T cell immunoreceptor with Ig and ITIM domains
hg19_v2_chr17_-_48785216_48785291	0.00979489	MSX1	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr1_+_46805832_46805874	0.00786466	MSX1	ENST00000474844.1|NSUN4|ENSG00000117481.6|NOP2/Sun domain family, member 4
hg19_v2_chr7_-_105332084_105332111	0.00747611	MSX1	ENST00000472195.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr14_-_75389925_75389969	0.00728863	MSX1	ENST00000556776.1|RPS6KL1|ENSG00000198208.7|ribosomal protein S6 kinase-like 1
hg19_v2_chr7_+_107220899_107220915	0.00624645	MSX1	ENST00000379117.2|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29 	ENST00000473124.1|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29
hg19_v2_chr8_+_28748765_28748833	0.00419624	MSX1	ENST00000355231.5|HMBOX1|ENSG00000147421.13|homeobox containing 1
hg19_v2_chrX_-_122756660_122756696	0.00324732	MSX1	ENST00000441692.1|THOC2|ENSG00000125676.15|THO complex 2
hg19_v2_chr15_+_51669444_51669479	0.00253237	MSX1	ENST00000396399.2|GLDN|ENSG00000186417.9|gliomedin
hg19_v2_chr16_-_71518504_71518542	0.00137528	MSX1	ENST00000565100.2|ZNF19|ENSG00000157429.11|zinc finger protein 19
hg19_v2_chr13_+_103459704_103459704	0.000199928	MSX1	ENST00000602836.1|BIVM-ERCC5|ENSG00000270181.1|BIVM-ERCC5 readthrough
hg19_v2_chr2_-_109605663_109605828	0.000133715	MSX1	ENST00000409271.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000258443.2|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000376651.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor
