hg19_v2_chr19_-_51456344_51456364	5.67205	GLI3	ENST00000336334.3|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5 	ENST00000593428.1|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr19_-_51456321_51456332	5.61536	GLI3	ENST00000391809.2|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr1_-_153433120_153433177	5.16391	GLI3	ENST00000368723.3|S100A7|ENSG00000143556.4|S100 calcium binding protein A7
hg19_v2_chr20_+_62327996_62328021	5.14754	GLI3	ENST00000369996.1|TNFRSF6B|ENSG00000243509.4|tumor necrosis factor receptor superfamily, member 6b, decoy
hg19_v2_chr19_-_51456198_51456301	4.81438	GLI3	ENST00000594846.1|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr10_+_88718397_88718424	4.66327	GLI3	ENST00000372017.3|SNCG|ENSG00000173267.9|synuclein, gamma (breast cancer-specific protein 1)
hg19_v2_chr10_+_88718314_88718388	4.61742	GLI3	ENST00000348795.4|SNCG|ENSG00000173267.9|synuclein, gamma (breast cancer-specific protein 1)
hg19_v2_chr18_+_21529811_21529857	4.52273	GLI3	ENST00000588004.1|LAMA3|ENSG00000053747.11|laminin, alpha 3
hg19_v2_chr22_+_31489344_31489371	4.30741	GLI3	ENST00000404574.1|SMTN|ENSG00000183963.14|smoothelin
hg19_v2_chr22_+_31488433_31488454	4.14205	GLI3	ENST00000455608.1|SMTN|ENSG00000183963.14|smoothelin
hg19_v2_chr1_+_150522222_150522315	4.03487	GLI3	ENST00000369039.5|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4
hg19_v2_chr1_+_45205498_45205554	3.99109	GLI3	ENST00000372218.4|KIF2C|ENSG00000142945.8|kinesin family member 2C
hg19_v2_chr13_-_60738003_60738121	3.87771	GLI3	ENST00000400330.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400324.4|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3
hg19_v2_chr19_-_51472031_51472047	3.8438	GLI3	ENST00000391808.1|KLK6|ENSG00000167755.9|kallikrein-related peptidase 6
hg19_v2_chr1_+_152956549_152956566	3.7627	GLI3	ENST00000307122.2|SPRR1A|ENSG00000169474.3|small proline-rich protein 1A
hg19_v2_chr12_-_57634475_57634532	3.47268	GLI3	ENST00000393825.1|NDUFA4L2|ENSG00000185633.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2
hg19_v2_chr4_-_57524061_57524074	3.29266	GLI3	ENST00000508121.1|HOPX|ENSG00000171476.17|HOP homeobox
hg19_v2_chr1_+_183155373_183155423	3.2734	GLI3	ENST00000493293.1|LAMC2|ENSG00000058085.10|laminin, gamma 2 	ENST00000264144.4|LAMC2|ENSG00000058085.10|laminin, gamma 2
hg19_v2_chr15_+_90728145_90728213	3.14805	GLI3	ENST00000561085.1|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENST00000379122.3|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENST00000332496.6|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
hg19_v2_chr11_+_69061594_69061635	3.01955	GLI3	ENST00000441339.2|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000308946.3|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000535407.1|MYEOV|ENSG00000172927.3|myeloma overexpressed
hg19_v2_chr7_-_24797546_24797732	2.98971	GLI3	ENST00000414428.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000419307.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000342947.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr13_-_20806440_20806534	2.83575	GLI3	ENST00000400066.3|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa 	ENST00000400065.3|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa 	ENST00000356192.6|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa
hg19_v2_chr1_+_45205478_45205492	2.80343	GLI3	ENST00000452259.1|KIF2C|ENSG00000142945.8|kinesin family member 2C 	ENST00000372224.4|KIF2C|ENSG00000142945.8|kinesin family member 2C
hg19_v2_chr19_+_2096868_2096922	2.72133	GLI3	ENST00000395296.1|IZUMO4|ENSG00000099840.9|IZUMO family member 4 	ENST00000395301.3|IZUMO4|ENSG00000099840.9|IZUMO family member 4
hg19_v2_chr13_-_60737898_60737910	2.67477	GLI3	ENST00000377908.2|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400319.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400320.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000267215.4|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3
hg19_v2_chr1_+_152881014_152881031	2.66676	GLI3	ENST00000368764.3|IVL|ENSG00000163207.5|involucrin 	ENST00000392667.2|IVL|ENSG00000163207.5|involucrin
hg19_v2_chr12_-_125348329_125348419	2.65573	GLI3	ENST00000546215.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000415380.2|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000261693.6|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000376788.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000545493.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1
hg19_v2_chr1_-_152386732_152386745	2.6518	GLI3	ENST00000271835.3|CRNN|ENSG00000143536.7|cornulin
hg19_v2_chr2_+_102928009_102928033	2.53056	GLI3	ENST00000404917.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000447231.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr9_+_35673853_35673905	2.46867	GLI3	ENST00000378357.4|CA9|ENSG00000107159.8|carbonic anhydrase IX
hg19_v2_chr4_+_17812525_17812648	2.43219	GLI3	ENST00000251496.2|NCAPG|ENSG00000109805.5|non-SMC condensin I complex, subunit G
hg19_v2_chr1_-_200589859_200589887	2.38487	GLI3	ENST00000367350.4|KIF14|ENSG00000118193.7|kinesin family member 14
hg19_v2_chr17_+_15848231_15848231	2.35698	GLI3	ENST00000304222.2|ADORA2B|ENSG00000170425.3|adenosine A2b receptor
hg19_v2_chr21_-_45079341_45079400	2.35548	GLI3	ENST00000443485.1|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein 	ENST00000291560.2|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein
hg19_v2_chr12_-_52845910_52845938	2.32401	GLI3	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr15_+_67430339_67430366	2.29418	GLI3	ENST00000439724.3|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr7_-_41742697_41742714	2.23056	GLI3	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr19_+_45418067_45418126	2.22646	GLI3	ENST00000589078.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000586638.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chrX_+_17755563_17755618	2.21381	GLI3	ENST00000380045.3|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila) 	ENST00000380041.3|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila) 	ENST00000380043.3|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila) 	ENST00000398080.1|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila)
hg19_v2_chr12_-_125348448_125348472	2.18558	GLI3	ENST00000339570.5|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1
hg19_v2_chr1_+_150521876_150521901	2.16969	GLI3	ENST00000369041.5|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4 	ENST00000538795.1|AL356356.1|ENSG00000225996.2|Protein LOC100996516  	ENST00000271643.4|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4
hg19_v2_chr12_-_54813229_54813273	2.1236	GLI3	ENST00000293379.4|ITGA5|ENSG00000161638.6|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
hg19_v2_chr3_+_136537911_136538003	2.10131	GLI3	ENST00000393079.3|SLC35G2|ENSG00000168917.8|solute carrier family 35, member G2
hg19_v2_chr19_-_19051993_19052073	2.08391	GLI3	ENST00000594794.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000355887.6|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000392351.3|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000596482.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila)
hg19_v2_chr8_+_31497271_31497285	2.07281	GLI3	ENST00000520407.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr19_+_676385_676403	2.07075	GLI3	ENST00000166139.4|FSTL3|ENSG00000070404.5|follistatin-like 3 (secreted glycoprotein)
hg19_v2_chr12_-_13529642_13529664	2.05987	GLI3	ENST00000318426.2|C12orf36|ENSG00000180861.5|chromosome 12 open reading frame 36
hg19_v2_chr6_-_4135825_4135836	2.05517	GLI3	ENST00000380118.3|ECI2|ENSG00000198721.8|enoyl-CoA delta isomerase 2 	ENST00000413766.2|ECI2|ENSG00000198721.8|enoyl-CoA delta isomerase 2 	ENST00000361538.2|ECI2|ENSG00000198721.8|enoyl-CoA delta isomerase 2
hg19_v2_chr7_-_24797032_24797162	2.05282	GLI3	ENST00000409970.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000409775.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr19_+_45417812_45417869	2.01309	GLI3	ENST00000592535.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr11_-_2170786_2170833	1.96177	GLI3	ENST00000300632.5|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr19_+_45417504_45417589	1.95364	GLI3	ENST00000588750.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000588802.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr10_-_90712520_90712536	1.91435	GLI3	ENST00000224784.6|ACTA2|ENSG00000107796.8|actin, alpha 2, smooth muscle, aorta
hg19_v2_chr6_-_2903514_2903552	1.90808	GLI3	ENST00000380698.4|SERPINB9|ENSG00000170542.5|serpin peptidase inhibitor, clade B (ovalbumin), member 9
hg19_v2_chr7_-_128045984_128046026	1.90687	GLI3	ENST00000470772.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000480861.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000496200.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1
hg19_v2_chr2_+_10262442_10262479	1.81983	GLI3	ENST00000360566.2|RRM2|ENSG00000171848.9|ribonucleotide reductase M2
hg19_v2_chr19_+_45417921_45417970	1.81159	GLI3	ENST00000252491.4|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000592885.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000589781.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr2_+_65215604_65215625	1.7879	GLI3	ENST00000531327.1|SLC1A4|ENSG00000115902.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
hg19_v2_chr9_-_139891165_139891255	1.77665	GLI3	ENST00000494426.1|CLIC3|ENSG00000169583.12|chloride intracellular channel 3
hg19_v2_chr22_+_46692638_46692690	1.75986	GLI3	ENST00000454366.1|GTSE1|ENSG00000075218.14|G-2 and S-phase expressed 1
hg19_v2_chr6_-_105627735_105627917	1.71698	GLI3	ENST00000254765.3|POPDC3|ENSG00000132429.5|popeye domain containing 3
hg19_v2_chr17_-_76899275_76899302	1.69158	GLI3	ENST00000322630.2|DDC8|ENSG00000178404.5|Protein DDC8 homolog  	ENST00000586713.1|DDC8|ENSG00000178404.5|Protein DDC8 homolog
hg19_v2_chr20_+_3776371_3776506	1.68977	GLI3	ENST00000245960.5|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr2_-_208031542_208031595	1.66655	GLI3	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr2_-_241080069_241080082	1.66424	GLI3	ENST00000319460.1|OTOS|ENSG00000178602.3|otospiralin
hg19_v2_chr1_+_28206150_28206242	1.65688	GLI3	ENST00000456990.1|THEMIS2|ENSG00000130775.11|thymocyte selection associated family member 2
hg19_v2_chr19_-_44285401_44285446	1.64801	GLI3	ENST00000262888.3|KCNN4|ENSG00000104783.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
hg19_v2_chr11_-_119187826_119187847	1.62843	GLI3	ENST00000264036.4|MCAM|ENSG00000076706.10|melanoma cell adhesion molecule
hg19_v2_chr1_+_3388181_3388194	1.60692	GLI3	ENST00000418137.1|ARHGEF16|ENSG00000130762.10|Rho guanine nucleotide exchange factor (GEF) 16 	ENST00000413250.2|ARHGEF16|ENSG00000130762.10|Rho guanine nucleotide exchange factor (GEF) 16
hg19_v2_chr20_+_814377_814452	1.60557	GLI3	ENST00000304189.2|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A 	ENST00000381939.1|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A
hg19_v2_chr16_-_84538218_84538364	1.59823	GLI3	ENST00000562447.1|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1 	ENST00000565765.1|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1 	ENST00000535580.1|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1 	ENST00000343629.6|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1
hg19_v2_chr17_-_76921459_76921478	1.58844	GLI3	ENST00000262768.7|TIMP2|ENSG00000035862.8|TIMP metallopeptidase inhibitor 2
hg19_v2_chr5_-_39270725_39270771	1.58788	GLI3	ENST00000512138.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000512982.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000540520.1|FYB|ENSG00000082074.11|FYN binding protein
hg19_v2_chr14_+_24099318_24099333	1.57611	GLI3	ENST00000432832.2|DHRS2|ENSG00000100867.10|dehydrogenase/reductase (SDR family) member 2
hg19_v2_chr1_-_26232951_26232959	1.57121	GLI3	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr19_-_11689752_11689801	1.56411	GLI3	ENST00000592659.1|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant 	ENST00000592828.1|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant 	ENST00000218758.5|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant 	ENST00000412435.2|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant
hg19_v2_chr11_-_2160180_2160257	1.56172	GLI3	ENST00000381406.4|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr10_-_134145321_134145369	1.55788	GLI3	ENST00000368625.4|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000368619.3|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000456004.1|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000368620.2|STK32C|ENSG00000165752.12|serine/threonine kinase 32C
hg19_v2_chr19_-_35992780_35992815	1.55283	GLI3	ENST00000593342.1|DMKN|ENSG00000161249.16|dermokine 	ENST00000601650.1|DMKN|ENSG00000161249.16|dermokine 	ENST00000408915.2|DMKN|ENSG00000161249.16|dermokine
hg19_v2_chr17_+_17942684_17942784	1.5415	GLI3	ENST00000376345.3|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr19_-_2041159_2041206	1.53592	GLI3	ENST00000589441.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr20_+_3776936_3776964	1.53306	GLI3	ENST00000439880.2|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr2_-_85636928_85636955	1.50558	GLI3	ENST00000449030.1|CAPG|ENSG00000042493.11|capping protein (actin filament), gelsolin-like
hg19_v2_chr11_+_69931519_69931528	1.49889	GLI3	ENST00000316296.5|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel 	ENST00000530676.1|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr6_+_43739697_43739752	1.46402	GLI3	ENST00000230480.6|VEGFA|ENSG00000112715.16|vascular endothelial growth factor A
hg19_v2_chr9_-_113800341_113800373	1.44778	GLI3	ENST00000358883.4|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr11_-_64646086_64646191	1.44517	GLI3	ENST00000320631.3|EHD1|ENSG00000110047.13|EH-domain containing 1
hg19_v2_chr11_-_65667884_65667895	1.4288	GLI3	ENST00000448083.2|FOSL1|ENSG00000175592.4|FOS-like antigen 1 	ENST00000531493.1|FOSL1|ENSG00000175592.4|FOS-like antigen 1 	ENST00000532401.1|FOSL1|ENSG00000175592.4|FOS-like antigen 1
hg19_v2_chr1_-_85358850_85358906	1.42522	GLI3	ENST00000370611.3|LPAR3|ENSG00000171517.5|lysophosphatidic acid receptor 3
hg19_v2_chr3_-_196756646_196756725	1.42347	GLI3	ENST00000439320.1|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 	ENST00000296351.4|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 	ENST00000296350.5|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5
hg19_v2_chr17_-_43025005_43025149	1.41881	GLI3	ENST00000587309.1|KIF18B|ENSG00000186185.9|kinesin family member 18B 	ENST00000593135.1|KIF18B|ENSG00000186185.9|kinesin family member 18B 	ENST00000339151.4|KIF18B|ENSG00000186185.9|kinesin family member 18B
hg19_v2_chr14_+_105155925_105155979	1.40888	GLI3	ENST00000330634.7|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing 	ENST00000398337.4|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing 	ENST00000392634.4|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing
hg19_v2_chr6_+_31465849_31465863	1.40708	GLI3	ENST00000399150.3|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr11_+_13690249_13690274	1.39944	GLI3	ENST00000532701.1|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr20_+_18568537_18568585	1.39708	GLI3	ENST00000377452.3|DTD1|ENSG00000125821.7|D-tyrosyl-tRNA deacylase 1
hg19_v2_chr7_+_130131907_130131947	1.39646	GLI3	ENST00000223215.4|MEST|ENSG00000106484.10|mesoderm specific transcript 	ENST00000437945.1|MEST|ENSG00000106484.10|mesoderm specific transcript
hg19_v2_chr17_+_36584662_36584730	1.39037	GLI3	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr20_-_1306351_1306367	1.36009	GLI3	ENST00000381812.1|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr13_+_32889605_32889653	1.35891	GLI3	ENST00000380152.3|BRCA2|ENSG00000139618.10|breast cancer 2, early onset 	ENST00000544455.1|BRCA2|ENSG00000139618.10|breast cancer 2, early onset 	ENST00000530893.2|BRCA2|ENSG00000139618.10|breast cancer 2, early onset
hg19_v2_chrX_+_135229600_135229624	1.34758	GLI3	ENST00000370690.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr20_-_44420507_44420547	1.34609	GLI3	ENST00000243938.4|WFDC3|ENSG00000124116.14|WAP four-disulfide core domain 3
hg19_v2_chr7_-_4923259_4923310	1.33642	GLI3	ENST00000536091.1|RADIL|ENSG00000157927.12|Ras association and DIL domains
hg19_v2_chr7_-_4923315_4923360	1.33115	GLI3	ENST00000399583.3|RADIL|ENSG00000157927.12|Ras association and DIL domains
hg19_v2_chr11_-_568369_568457	1.31653	GLI3	ENST00000534540.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000528245.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000500447.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000533920.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding)
hg19_v2_chr4_-_111119804_111119832	1.31555	GLI3	ENST00000394607.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6 	ENST00000302274.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6
hg19_v2_chr2_-_96781984_96781984	1.31069	GLI3	ENST00000409345.3|ADRA2B|ENSG00000222040.3|adrenoceptor alpha 2B
hg19_v2_chr6_+_31465892_31465937	1.30686	GLI3	ENST00000252229.6|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B 	ENST00000427115.1|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr6_-_133084580_133084605	1.30627	GLI3	ENST00000525270.1|VNN2|ENSG00000112303.9|vanin 2 	ENST00000530536.1|VNN2|ENSG00000112303.9|vanin 2 	ENST00000524919.1|VNN2|ENSG00000112303.9|vanin 2
hg19_v2_chr14_-_39572345_39572453	1.3036	GLI3	ENST00000548032.2|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae) 	ENST00000556092.1|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae) 	ENST00000557280.1|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae) 	ENST00000545328.2|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae) 	ENST00000553970.1|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae)
hg19_v2_chr20_-_33880204_33880234	1.29082	GLI3	ENST00000374408.3|FAM83C|ENSG00000125998.7|family with sequence similarity 83, member C
hg19_v2_chr14_-_39572279_39572340	1.28823	GLI3	ENST00000536508.1|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae)
hg19_v2_chr20_-_6104191_6104228	1.28014	GLI3	ENST00000217289.4|FERMT1|ENSG00000101311.11|fermitin family member 1
hg19_v2_chrX_+_152086373_152086414	1.2765	GLI3	ENST00000318529.8|ZNF185|ENSG00000147394.14|zinc finger protein 185 (LIM domain)
hg19_v2_chr14_+_105212297_105212393	1.26558	GLI3	ENST00000556623.1|ADSSL1|ENSG00000185100.6|adenylosuccinate synthase like 1 	ENST00000555674.1|ADSSL1|ENSG00000185100.6|adenylosuccinate synthase like 1
hg19_v2_chr4_+_77172847_77172897	1.25982	GLI3	ENST00000515604.1|FAM47E|ENSG00000272414.1|uncharacterized protein LOC100631383  	ENST00000539752.1|FAM47E-STBD1|ENSG00000118804.7|FAM47E-STBD1 readthrough 	ENST00000424749.2|FAM47E|ENSG00000189157.9|family with sequence similarity 47, member E
hg19_v2_chr17_-_39928106_39928152	1.25871	GLI3	ENST00000540235.1|JUP|ENSG00000173801.12|junction plakoglobin
hg19_v2_chr6_+_24775641_24775710	1.25364	GLI3	ENST00000378054.2|GMNN|ENSG00000112312.5|geminin, DNA replication inhibitor 	ENST00000476555.1|GMNN|ENSG00000112312.5|geminin, DNA replication inhibitor
hg19_v2_chr3_-_48130707_48130789	1.25141	GLI3	ENST00000360240.6|MAP4|ENSG00000047849.17|microtubule-associated protein 4 	ENST00000383737.4|MAP4|ENSG00000047849.17|microtubule-associated protein 4
hg19_v2_chr16_+_30194916_30194955	1.23235	GLI3	ENST00000570045.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A 	ENST00000565497.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A 	ENST00000570244.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chr20_-_6103666_6103737	1.22801	GLI3	ENST00000536936.1|FERMT1|ENSG00000101311.11|fermitin family member 1
hg19_v2_chr20_+_43343517_43343580	1.22744	GLI3	ENST00000372865.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr19_+_38810447_38810529	1.22576	GLI3	ENST00000263372.3|KCNK6|ENSG00000099337.3|potassium channel, subfamily K, member 6
hg19_v2_chr8_+_124194875_124194921	1.22218	GLI3	ENST00000522648.1|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A 	ENST00000276699.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr16_+_725650_725716	1.22131	GLI3	ENST00000352681.3|RHBDL1|ENSG00000103269.9|rhomboid, veinlet-like 1 (Drosophila) 	ENST00000561556.1|RHBDL1|ENSG00000103269.9|rhomboid, veinlet-like 1 (Drosophila)
hg19_v2_chr2_+_127656486_127656495	1.21774	GLI3	ENST00000568484.1|AC114783.1|ENSG00000237524.3|Protein LOC339760  	ENST00000450035.1|AC114783.1|ENSG00000237524.3|Protein LOC339760
hg19_v2_chr9_-_34458531_34458582	1.21361	GLI3	ENST00000379089.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379087.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379084.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379081.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379080.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000422409.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379078.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000445726.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000297620.4|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A
hg19_v2_chr12_+_57853918_57853934	1.21212	GLI3	ENST00000532291.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1 	ENST00000543426.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1 	ENST00000228682.2|GLI1|ENSG00000111087.5|GLI family zinc finger 1 	ENST00000546141.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1
hg19_v2_chr15_-_64665911_64665980	1.21193	GLI3	ENST00000606793.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein  	ENST00000561349.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein  	ENST00000560278.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein
hg19_v2_chr8_+_124194752_124194835	1.20763	GLI3	ENST00000318462.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr17_+_39969183_39969265	1.19708	GLI3	ENST00000321562.4|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa
hg19_v2_chrX_-_100914781_100914876	1.19558	GLI3	ENST00000431597.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000458024.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000413506.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000440675.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000328766.5|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000356824.4|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2
hg19_v2_chr3_-_59035673_59035810	1.1928	GLI3	ENST00000491845.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000472469.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000471288.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000295966.7|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67
hg19_v2_chr17_-_34122596_34122711	1.18875	GLI3	ENST00000250144.8|MMP28|ENSG00000129270.11|matrix metallopeptidase 28
hg19_v2_chr19_+_36024310_36024329	1.18875	GLI3	ENST00000222286.4|GAPDHS|ENSG00000105679.4|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
hg19_v2_chr22_+_50528459_50528516	1.18338	GLI3	ENST00000395858.3|MOV10L1|ENSG00000073146.11|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse) 	ENST00000395843.1|MOV10L1|ENSG00000073146.11|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)
hg19_v2_chr20_-_1306391_1306513	1.18153	GLI3	ENST00000339987.3|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr12_-_8814669_8814767	1.18128	GLI3	ENST00000535411.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000540087.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chrX_+_135229559_135229576	1.17451	GLI3	ENST00000394155.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr1_+_1550795_1550927	1.17016	GLI3	ENST00000520777.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000357210.4|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000360522.4|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000378710.3|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000355826.5|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000518681.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000505820.2|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2
hg19_v2_chr11_-_73472096_73472204	1.16228	GLI3	ENST00000541588.1|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family 	ENST00000336083.3|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family 	ENST00000540771.1|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family 	ENST00000310653.6|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family
hg19_v2_chr4_-_177713788_177713881	1.15596	GLI3	ENST00000280193.2|VEGFC|ENSG00000150630.2|vascular endothelial growth factor C
hg19_v2_chr16_+_88923494_88923576	1.15155	GLI3	ENST00000567895.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000301021.3|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000565504.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000567312.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000568583.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000561840.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like
hg19_v2_chr6_-_53213587_53213772	1.1509	GLI3	ENST00000542638.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370913.5|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000541407.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr8_-_82024290_82024310	1.14916	GLI3	ENST00000220597.4|PAG1|ENSG00000076641.4|phosphoprotein associated with glycosphingolipid microdomains 1
hg19_v2_chr5_-_157002775_157002790	1.14865	GLI3	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr10_-_116164239_116164268	1.14654	GLI3	ENST00000419268.1|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2 	ENST00000304129.4|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2 	ENST00000545353.1|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2
hg19_v2_chr7_-_97501706_97501727	1.13542	GLI3	ENST00000455086.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing) 	ENST00000453600.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr19_-_42931567_42931581	1.13469	GLI3	ENST00000244289.4|LIPE|ENSG00000079435.5|lipase, hormone-sensitive
hg19_v2_chr20_+_43343476_43343487	1.12207	GLI3	ENST00000372868.2|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr1_-_156542328_156542364	1.11913	GLI3	ENST00000361170.2|IQGAP3|ENSG00000183856.6|IQ motif containing GTPase activating protein 3
hg19_v2_chr6_-_2876744_2876795	1.11734	GLI3	ENST00000420981.2|RP11-420G6.4|ENSG00000230438.5|RP11-420G6.4
hg19_v2_chr1_+_44399466_44399518	1.11669	GLI3	ENST00000498139.2|ARTN|ENSG00000117407.12|artemin 	ENST00000491846.1|ARTN|ENSG00000117407.12|artemin
hg19_v2_chr11_-_61646054_61646115	1.11504	GLI3	ENST00000527379.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr9_-_114937543_114937559	1.11241	GLI3	ENST00000374264.2|SUSD1|ENSG00000106868.12|sushi domain containing 1 	ENST00000374263.3|SUSD1|ENSG00000106868.12|sushi domain containing 1
hg19_v2_chr18_+_56530136_56530199	1.10263	GLI3	ENST00000591083.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr6_-_33756867_33756950	1.09981	GLI3	ENST00000293760.5|LEMD2|ENSG00000161904.7|LEM domain containing 2
hg19_v2_chrX_+_2984874_2984874	1.09737	GLI3	ENST00000359361.2|ARSF|ENSG00000062096.10|arylsulfatase F
hg19_v2_chr1_-_26232522_26232644	1.09668	GLI3	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr13_-_24007815_24007872	1.07551	GLI3	ENST00000382298.3|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr7_-_97501411_97501431	1.07503	GLI3	ENST00000437628.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr1_+_11994715_11994833	1.07438	GLI3	ENST00000449038.1|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENST00000376369.3|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENST00000429000.2|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENST00000196061.4|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
hg19_v2_chr6_-_109777128_109777203	1.06977	GLI3	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr10_+_17270214_17270258	1.06901	GLI3	ENST00000544301.1|VIM|ENSG00000026025.9|vimentin
hg19_v2_chr7_-_97501432_97501451	1.06821	GLI3	ENST00000394309.3|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr17_-_34808047_34808104	1.05933	GLI3	ENST00000592614.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000591542.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000400684.4|TBC1D3H|ENSG00000242384.3|TBC1 domain family, member 3H 	ENST00000330458.7|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000341264.6|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000592987.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G
hg19_v2_chr10_+_11060004_11060106	1.04892	GLI3	ENST00000542579.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000399850.3|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000417956.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr5_-_132112921_132112960	1.04611	GLI3	ENST00000378721.4|SEPT8|ENSG00000164402.9|septin 8 	ENST00000378701.1|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr17_-_39274606_39274626	1.03362	GLI3	ENST00000391413.2|KRTAP4-11|ENSG00000212721.2|keratin associated protein 4-11
hg19_v2_chr2_-_224702740_224702761	1.03297	GLI3	ENST00000444408.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr9_+_126118449_126118539	1.03107	GLI3	ENST00000359999.3|CRB2|ENSG00000148204.7|crumbs homolog 2 (Drosophila) 	ENST00000373631.3|CRB2|ENSG00000148204.7|crumbs homolog 2 (Drosophila)
hg19_v2_chr3_-_179169330_179169384	1.01805	GLI3	ENST00000232564.3|GNB4|ENSG00000114450.5|guanine nucleotide binding protein (G protein), beta polypeptide 4
hg19_v2_chr6_+_31371337_31371449	1.01804	GLI3	ENST00000449934.2|MICA|ENSG00000204520.8|MHC class I polypeptide-related sequence A 	ENST00000421350.1|MICA|ENSG00000204520.8|MHC class I polypeptide-related sequence A
hg19_v2_chr5_-_132112907_132112918	1.0171	GLI3	ENST00000458488.2|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr14_+_75469606_75469690	1.01663	GLI3	ENST00000266126.5|EIF2B2|ENSG00000119718.6|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa
hg19_v2_chr18_-_31803169_31803169	1.01632	GLI3	ENST00000590712.1|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr9_-_136242909_136242953	1.0013	GLI3	ENST00000371991.3|SURF4|ENSG00000148248.9|surfeit 4 	ENST00000545297.1|SURF4|ENSG00000148248.9|surfeit 4
hg19_v2_chr20_-_36793663_36793735	0.99057	GLI3	ENST00000536701.1|TGM2|ENSG00000198959.7|transglutaminase 2 	ENST00000536724.1|TGM2|ENSG00000198959.7|transglutaminase 2
hg19_v2_chr20_-_50808236_50808264	0.989465	GLI3	ENST00000361387.2|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr3_+_10068095_10068183	0.980778	GLI3	ENST00000287647.3|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000383807.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000383806.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000419585.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2
hg19_v2_chr2_-_224702270_224702326	0.974669	GLI3	ENST00000396654.2|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit 	ENST00000396653.2|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit 	ENST00000423110.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit 	ENST00000443700.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr7_-_143059845_143059866	0.971224	GLI3	ENST00000443739.2|FAM131B|ENSG00000159784.13|family with sequence similarity 131, member B
hg19_v2_chr18_+_77623668_77623668	0.971177	GLI3	ENST00000316249.3|KCNG2|ENSG00000178342.4|potassium voltage-gated channel, subfamily G, member 2
hg19_v2_chr17_+_73750699_73750793	0.969127	GLI3	ENST00000584939.1|ITGB4|ENSG00000132470.9|integrin, beta 4
hg19_v2_chr16_+_70680439_70680482	0.962666	GLI3	ENST00000288098.2|IL34|ENSG00000157368.6|interleukin 34
hg19_v2_chr1_+_155178518_155178600	0.961654	GLI3	ENST00000316721.4|MTX1|ENSG00000173171.10|metaxin 1
hg19_v2_chr22_+_50528308_50528439	0.96011	GLI3	ENST00000545383.1|MOV10L1|ENSG00000073146.11|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse) 	ENST00000262794.5|MOV10L1|ENSG00000073146.11|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)
hg19_v2_chr15_-_78933567_78933604	0.959604	GLI3	ENST00000261751.3|CHRNB4|ENSG00000117971.7|cholinergic receptor, nicotinic, beta 4 (neuronal) 	ENST00000412074.2|CHRNB4|ENSG00000117971.7|cholinergic receptor, nicotinic, beta 4 (neuronal)
hg19_v2_chr14_-_107095662_107095662	0.956298	GLI3	ENST00000390630.2|IGHV4-61|ENSG00000211970.2|immunoglobulin heavy variable 4-61
hg19_v2_chr10_+_75910960_75910989	0.955829	GLI3	ENST00000539909.1|ADK|ENSG00000156110.9|adenosine kinase 	ENST00000286621.2|ADK|ENSG00000156110.9|adenosine kinase
hg19_v2_chr3_+_101818088_101818088	0.954939	GLI3	ENST00000491959.1|ZPLD1|ENSG00000170044.4|zona pellucida-like domain containing 1
hg19_v2_chr6_+_34204642_34204664	0.954749	GLI3	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chrX_-_152486108_152486123	0.953747	GLI3	ENST00000356661.5|MAGEA1|ENSG00000198681.5|melanoma antigen family A, 1 (directs expression of antigen MZ2-E)
hg19_v2_chr11_-_128457446_128457461	0.945798	GLI3	ENST00000392668.4|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1
hg19_v2_chr17_+_80517216_80517251	0.943403	GLI3	ENST00000531030.1|FOXK2|ENSG00000141568.15|forkhead box K2 	ENST00000526383.2|FOXK2|ENSG00000141568.15|forkhead box K2
hg19_v2_chr2_+_242811874_242811904	0.935359	GLI3	ENST00000343216.3|CXXC11|ENSG00000188011.5|CXXC finger protein 11
hg19_v2_chr1_+_35544968_35545014	0.934944	GLI3	ENST00000359858.4|ZMYM1|ENSG00000197056.5|zinc finger, MYM-type 1 	ENST00000373330.1|ZMYM1|ENSG00000197056.5|zinc finger, MYM-type 1
hg19_v2_chr12_-_54779511_54779577	0.93244	GLI3	ENST00000551109.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000546970.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chrX_-_153775426_153775469	0.929797	GLI3	ENST00000393562.2|G6PD|ENSG00000160211.11|glucose-6-phosphate dehydrogenase
hg19_v2_chr10_+_75936444_75936537	0.927405	GLI3	ENST00000372734.3|ADK|ENSG00000156110.9|adenosine kinase 	ENST00000541550.1|ADK|ENSG00000156110.9|adenosine kinase
hg19_v2_chr19_-_49015050_49015111	0.92596	GLI3	ENST00000600059.1|LMTK3|ENSG00000142235.4|lemur tyrosine kinase 3
hg19_v2_chr19_+_10216899_10217095	0.925889	GLI3	ENST00000428358.1|PPAN-P2RY11|ENSG00000243207.2|PPAN-P2RY11 readthrough 	ENST00000253107.7|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila) 	ENST00000556468.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila) 	ENST00000393796.4|PPAN-P2RY11|ENSG00000243207.2|PPAN-P2RY11 readthrough 	ENST00000393793.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr9_-_131872928_131873088	0.917637	GLI3	ENST00000455830.2|CRAT|ENSG00000095321.12|carnitine O-acetyltransferase 	ENST00000393384.3|CRAT|ENSG00000095321.12|carnitine O-acetyltransferase 	ENST00000318080.2|CRAT|ENSG00000095321.12|carnitine O-acetyltransferase
hg19_v2_chr17_-_7307358_7307456	0.916939	GLI3	ENST00000576017.1|TMEM256|ENSG00000205544.3|transmembrane protein 256 	ENST00000535512.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000302422.3|TMEM256|ENSG00000205544.3|transmembrane protein 256
hg19_v2_chr14_-_107083690_107083830	0.907737	GLI3	ENST00000455737.1|IGHV4-59|ENSG00000224373.2|immunoglobulin heavy variable 4-59 	ENST00000390629.2|IGHV4-59|ENSG00000224373.2|immunoglobulin heavy variable 4-59
hg19_v2_chr1_+_155178481_155178493	0.906154	GLI3	ENST00000368376.3|MTX1|ENSG00000173171.10|metaxin 1
hg19_v2_chr7_-_100860851_100860954	0.899319	GLI3	ENST00000223127.3|PLOD3|ENSG00000106397.7|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
hg19_v2_chr20_+_42984330_42984445	0.898971	GLI3	ENST00000316673.4|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000609795.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000457232.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000609262.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha
hg19_v2_chr1_+_203595903_203595934	0.898139	GLI3	ENST00000367218.3|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4 	ENST00000367219.3|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4 	ENST00000391954.2|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4
hg19_v2_chr16_+_88704978_88705001	0.894252	GLI3	ENST00000244241.4|IL17C|ENSG00000124391.4|interleukin 17C
hg19_v2_chrX_+_135618258_135618354	0.893747	GLI3	ENST00000440515.1|VGLL1|ENSG00000102243.8|vestigial like 1 (Drosophila) 	ENST00000456412.1|VGLL1|ENSG00000102243.8|vestigial like 1 (Drosophila)
hg19_v2_chr16_+_30064411_30064428	0.893611	GLI3	ENST00000338110.5|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr21_-_46964306_46964332	0.89137	GLI3	ENST00000443742.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000528477.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000567670.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1
hg19_v2_chr10_-_50342053_50342053	0.879379	GLI3	ENST00000311787.5|FAM170B|ENSG00000172538.6|family with sequence similarity 170, member B
hg19_v2_chr16_+_56598961_56598990	0.877058	GLI3	ENST00000219162.3|MT4|ENSG00000102891.3|metallothionein 4
hg19_v2_chr17_+_18647326_18647388	0.874153	GLI3	ENST00000395667.1|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10 	ENST00000395665.4|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10 	ENST00000308799.4|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10 	ENST00000301938.4|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10
hg19_v2_chr10_-_116164450_116164515	0.873875	GLI3	ENST00000369271.3|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2
hg19_v2_chrX_+_72223352_72223449	0.873305	GLI3	ENST00000373521.2|PABPC1L2B|ENSG00000184388.4|poly(A) binding protein, cytoplasmic 1-like 2B 	ENST00000538388.1|PABPC1L2B|ENSG00000184388.4|poly(A) binding protein, cytoplasmic 1-like 2B
hg19_v2_chr1_+_26605618_26605667	0.868206	GLI3	ENST00000270792.5|SH3BGRL3|ENSG00000142669.9|SH3 domain binding glutamic acid-rich protein like 3
hg19_v2_chr3_-_108308241_108308316	0.863248	GLI3	ENST00000295746.8|KIAA1524|ENSG00000163507.9|KIAA1524
hg19_v2_chr16_+_30064444_30064528	0.862529	GLI3	ENST00000395248.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000566897.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000568435.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr10_+_106028923_106028956	0.858703	GLI3	ENST00000338595.2|GSTO2|ENSG00000065621.10|glutathione S-transferase omega 2
hg19_v2_chr17_-_38574169_38574202	0.858545	GLI3	ENST00000423485.1|TOP2A|ENSG00000131747.10|topoisomerase (DNA) II alpha 170kDa
hg19_v2_chr11_-_64085533_64085558	0.85744	GLI3	ENST00000544844.1|TRMT112|ENSG00000173113.2|tRNA methyltransferase 11-2 homolog (S. cerevisiae)
hg19_v2_chr20_+_814349_814375	0.857028	GLI3	ENST00000381941.3|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A
hg19_v2_chr1_-_229569834_229569849	0.84987	GLI3	ENST00000366684.3|ACTA1|ENSG00000143632.10|actin, alpha 1, skeletal muscle 	ENST00000366683.2|ACTA1|ENSG00000143632.10|actin, alpha 1, skeletal muscle
hg19_v2_chr12_-_120687948_120687971	0.848471	GLI3	ENST00000458477.2|PXN|ENSG00000089159.11|paxillin
hg19_v2_chr14_-_106068065_106068065	0.848351	GLI3	ENST00000390541.2|IGHE|ENSG00000211891.4|immunoglobulin heavy constant epsilon
hg19_v2_chr13_-_20767037_20767083	0.842519	GLI3	ENST00000382848.4|GJB2|ENSG00000165474.5|gap junction protein, beta 2, 26kDa
hg19_v2_chr12_+_12510045_12510073	0.842337	GLI3	ENST00000314565.4|LOH12CR1|ENSG00000165714.6|loss of heterozygosity, 12, chromosomal region 1
hg19_v2_chr1_-_110283138_110283138	0.836752	GLI3	ENST00000256594.3|GSTM3|ENSG00000134202.6|glutathione S-transferase mu 3 (brain)
hg19_v2_chr8_+_22857048_22857092	0.834804	GLI3	ENST00000251822.6|RHOBTB2|ENSG00000008853.12|Rho-related BTB domain containing 2
hg19_v2_chr10_+_49892904_49892925	0.831057	GLI3	ENST00000360890.2|WDFY4|ENSG00000128815.13|WDFY family member 4
hg19_v2_chr9_+_124413873_124413969	0.829137	GLI3	ENST00000408936.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr17_-_34757039_34757050	0.827908	GLI3	ENST00000455054.2|TBC1D3H|ENSG00000242384.3|TBC1 domain family, member 3H 	ENST00000308078.7|TBC1D3C|ENSG00000234972.4|TBC1 domain family, member 3C
hg19_v2_chr4_+_8582287_8582314	0.827687	GLI3	ENST00000382487.4|GPR78|ENSG00000155269.7|G protein-coupled receptor 78
hg19_v2_chr11_+_124735282_124735332	0.824729	GLI3	ENST00000397801.1|ROBO3|ENSG00000154134.10|roundabout, axon guidance receptor, homolog 3 (Drosophila)
hg19_v2_chr7_+_130126012_130126069	0.823354	GLI3	ENST00000341441.5|MEST|ENSG00000106484.10|mesoderm specific transcript
hg19_v2_chr9_-_101017900_101017951	0.822708	GLI3	ENST00000375066.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr12_+_50366620_50366735	0.822224	GLI3	ENST00000315520.5|AQP6|ENSG00000086159.8|aquaporin 6, kidney specific
hg19_v2_chr1_-_43833628_43833703	0.818428	GLI3	ENST00000413844.2|ELOVL1|ENSG00000066322.8|ELOVL fatty acid elongase 1 	ENST00000372458.3|ELOVL1|ENSG00000066322.8|ELOVL fatty acid elongase 1
hg19_v2_chr11_-_13484713_13484850	0.813124	GLI3	ENST00000526841.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000529708.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000278174.5|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000528120.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr11_+_844067_844158	0.811752	GLI3	ENST00000397406.1|TSPAN4|ENSG00000214063.6|tetraspanin 4 	ENST00000409543.2|TSPAN4|ENSG00000214063.6|tetraspanin 4 	ENST00000525201.1|TSPAN4|ENSG00000214063.6|tetraspanin 4
hg19_v2_chr17_+_17942594_17942606	0.811383	GLI3	ENST00000268719.4|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr9_-_101017862_101017897	0.811024	GLI3	ENST00000375064.1|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2 	ENST00000342112.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr9_+_112542572_112542590	0.807685	GLI3	ENST00000374530.3|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough
hg19_v2_chr1_+_150954493_150954528	0.807625	GLI3	ENST00000368947.4|ANXA9|ENSG00000143412.5|annexin A9
hg19_v2_chr6_-_32784687_32784839	0.805269	GLI3	ENST00000447394.1|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta 	ENST00000438763.2|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta
hg19_v2_chr14_+_106938440_106938474	0.800775	GLI3	ENST00000433371.1|LINC00221|ENSG00000187156.4|long intergenic non-protein coding RNA 221 	ENST00000449670.1|LINC00221|ENSG00000187156.4|long intergenic non-protein coding RNA 221 	ENST00000334298.3|LINC00221|ENSG00000187156.4|long intergenic non-protein coding RNA 221
hg19_v2_chr3_+_127323739_127323739	0.798633	GLI3	ENST00000491422.1|MCM2|ENSG00000073111.9|minichromosome maintenance complex component 2
hg19_v2_chr3_+_14166440_14166541	0.794967	GLI3	ENST00000306077.4|TMEM43|ENSG00000170876.7|transmembrane protein 43
hg19_v2_chr19_-_2050852_2050895	0.793777	GLI3	ENST00000541165.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000591601.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr17_+_75123947_75123964	0.790563	GLI3	ENST00000586429.1|SEC14L1|ENSG00000129657.10|SEC14-like 1 (S. cerevisiae)
hg19_v2_chr12_+_1800179_1800250	0.789213	GLI3	ENST00000357103.4|ADIPOR2|ENSG00000006831.9|adiponectin receptor 2
hg19_v2_chr1_-_245134273_245134390	0.785855	GLI3	ENST00000607453.1|RP11-156E8.1|ENSG00000272195.1|Uncharacterized protein
hg19_v2_chr1_-_45308616_45308735	0.78358	GLI3	ENST00000447098.2|PTCH2|ENSG00000117425.9|patched 2 	ENST00000372192.3|PTCH2|ENSG00000117425.9|patched 2
hg19_v2_chr11_-_61658853_61658932	0.781649	GLI3	ENST00000525588.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3 	ENST00000540820.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr9_+_135937365_135937365	0.777327	GLI3	ENST00000372080.4|CEL|ENSG00000170835.10|carboxyl ester lipase 	ENST00000351304.7|CEL|ENSG00000170835.10|carboxyl ester lipase
hg19_v2_chr1_-_95285652_95285719	0.776267	GLI3	ENST00000442418.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057
hg19_v2_chr19_+_41860047_41860083	0.773538	GLI3	ENST00000604123.1|TMEM91|ENSG00000142046.10|transmembrane protein 91
hg19_v2_chr1_+_155278625_155278745	0.767831	GLI3	ENST00000368356.4|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase 	ENST00000356657.6|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase
hg19_v2_chr11_-_627143_627187	0.767173	GLI3	ENST00000176195.3|SCT|ENSG00000070031.3|secretin
hg19_v2_chr1_-_155225178_155225225	0.766933	GLI3	ENST00000361361.2|FAM189B|ENSG00000160767.16|family with sequence similarity 189, member B
hg19_v2_chr7_-_56119156_56119163	0.766258	GLI3	ENST00000421312.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000416592.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase
hg19_v2_chr14_-_106791536_106791536	0.75879	GLI3	ENST00000390613.2|IGHV3-30|ENSG00000211953.2|immunoglobulin heavy variable 3-30
hg19_v2_chr17_-_34592032_34592032	0.757245	GLI3	ENST00000457979.3|TBC1D3C|ENSG00000234972.4|TBC1 domain family, member 3C
hg19_v2_chr14_+_93118813_93118870	0.75684	GLI3	ENST00000556418.1|RIN3|ENSG00000100599.11|Ras and Rab interactor 3
hg19_v2_chr3_-_43663519_43663560	0.754201	GLI3	ENST00000427171.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000292246.3|ANO10|ENSG00000160746.8|anoctamin 10
hg19_v2_chr20_+_35974532_35974557	0.749906	GLI3	ENST00000373578.2|SRC|ENSG00000197122.7|v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog
hg19_v2_chr1_+_209941827_209941837	0.746667	GLI3	ENST00000367023.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr2_+_201981527_201981560	0.744518	GLI3	ENST00000441224.1|CFLAR|ENSG00000003402.15|CASP8 and FADD-like apoptosis regulator
hg19_v2_chr20_-_22566089_22566097	0.744405	GLI3	ENST00000377115.4|FOXA2|ENSG00000125798.10|forkhead box A2
hg19_v2_chr9_-_114937676_114937698	0.738255	GLI3	ENST00000374270.3|SUSD1|ENSG00000106868.12|sushi domain containing 1
hg19_v2_chr7_+_143078652_143078754	0.736675	GLI3	ENST00000354434.4|ZYX|ENSG00000159840.11|zyxin 	ENST00000449423.2|ZYX|ENSG00000159840.11|zyxin
hg19_v2_chr2_+_241625749_241625758	0.733783	GLI3	ENST00000407635.2|AC011298.2|ENSG00000219159.3|AC011298.2
hg19_v2_chr14_+_96343100_96343115	0.733136	GLI3	ENST00000503525.2|LINC00617|ENSG00000250366.2|long intergenic non-protein coding RNA 617
hg19_v2_chr11_-_111783595_111783651	0.727721	GLI3	ENST00000528628.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr2_+_192109911_192110170	0.727493	GLI3	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr1_-_47407097_47407107	0.723311	GLI3	ENST00000457840.2|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11
hg19_v2_chr11_-_67442196_67442216	0.722743	GLI3	ENST00000525827.1|ALDH3B2|ENSG00000132746.10|aldehyde dehydrogenase 3 family, member B2
hg19_v2_chr17_+_7531281_7531320	0.722688	GLI3	ENST00000575729.1|SHBG|ENSG00000129214.10|sex hormone-binding globulin 	ENST00000340624.5|SHBG|ENSG00000129214.10|sex hormone-binding globulin
hg19_v2_chr3_-_139199565_139199582	0.722585	GLI3	ENST00000511956.1|RBP2|ENSG00000114113.2|retinol binding protein 2, cellular
hg19_v2_chr12_-_52867569_52867598	0.722097	GLI3	ENST00000252250.6|KRT6C|ENSG00000170465.9|keratin 6C
hg19_v2_chrX_-_148713365_148713438	0.721983	GLI3	ENST00000511776.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A 	ENST00000507237.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A
hg19_v2_chr7_+_44240520_44240652	0.719214	GLI3	ENST00000496112.1|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae) 	ENST00000223369.2|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae)
hg19_v2_chr1_+_15480197_15480285	0.717166	GLI3	ENST00000400796.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000434578.2|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000376008.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr9_+_5231413_5231425	0.71642	GLI3	ENST00000239316.4|INSL4|ENSG00000120211.4|insulin-like 4 (placenta)
hg19_v2_chr8_-_145331153_145331153	0.713729	GLI3	ENST00000377412.4|KM-PA-2|ENSG00000204775.4|KM-PA-2 protein; Uncharacterized protein
hg19_v2_chr19_-_18197714_18197750	0.708676	GLI3	ENST00000322153.7|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1
hg19_v2_chr2_-_85637459_85637495	0.708301	GLI3	ENST00000409921.1|CAPG|ENSG00000042493.11|capping protein (actin filament), gelsolin-like
hg19_v2_chr1_-_40349106_40349184	0.708236	GLI3	ENST00000545233.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000537440.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000537223.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000541099.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000441669.2|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000544981.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000316891.5|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000372818.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1
hg19_v2_chr6_+_160183492_160183523	0.705023	GLI3	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chrX_+_134166333_134166371	0.704825	GLI3	ENST00000257013.7|FAM127A|ENSG00000134590.9|family with sequence similarity 127, member A
hg19_v2_chr5_-_157002749_157002768	0.703548	GLI3	ENST00000517905.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000430702.2|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000394020.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr17_-_36348610_36348666	0.702193	GLI3	ENST00000339023.4|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3 	ENST00000354664.4|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3
hg19_v2_chr1_+_155278539_155278559	0.70184	GLI3	ENST00000447866.1|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase
hg19_v2_chr17_+_4736627_4736720	0.69739	GLI3	ENST00000355280.6|MINK1|ENSG00000141503.11|misshapen-like kinase 1 	ENST00000347992.7|MINK1|ENSG00000141503.11|misshapen-like kinase 1
hg19_v2_chr8_-_142011036_142011127	0.693667	GLI3	ENST00000520892.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr11_+_73003824_73003859	0.69207	GLI3	ENST00000538328.1|P2RY6|ENSG00000171631.10|pyrimidinergic receptor P2Y, G-protein coupled, 6
hg19_v2_chr22_-_28197486_28197544	0.69151	GLI3	ENST00000302326.4|MN1|ENSG00000169184.5|meningioma (disrupted in balanced translocation) 1
hg19_v2_chr1_+_202995611_202995680	0.687698	GLI3	ENST00000367240.2|PPFIA4|ENSG00000143847.11|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
hg19_v2_chr1_-_120190396_120190396	0.686074	GLI3	ENST00000421812.2|ZNF697|ENSG00000143067.4|zinc finger protein 697
hg19_v2_chr8_+_22428457_22428633	0.684747	GLI3	ENST00000517962.1|SORBS3|ENSG00000120896.9|sorbin and SH3 domain containing 3
hg19_v2_chr1_-_28559502_28559570	0.681835	GLI3	ENST00000263697.4|DNAJC8|ENSG00000126698.6|DnaJ (Hsp40) homolog, subfamily C, member 8
hg19_v2_chr9_-_113800317_113800328	0.680838	GLI3	ENST00000374431.3|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr2_-_224702257_224702266	0.679261	GLI3	ENST00000409375.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr7_-_92465868_92465922	0.677792	GLI3	ENST00000424848.2|CDK6|ENSG00000105810.5|cyclin-dependent kinase 6
hg19_v2_chr5_-_141060389_141060439	0.674264	GLI3	ENST00000504448.1|ARAP3|ENSG00000120318.11|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
hg19_v2_chr14_-_106805716_106805716	0.673342	GLI3	ENST00000438142.2|IGHV4-31|ENSG00000231475.2|immunoglobulin heavy variable 4-31
hg19_v2_chr2_-_224702201_224702256	0.672341	GLI3	ENST00000446015.2|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr16_+_4526341_4526460	0.670599	GLI3	ENST00000458134.3|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000219700.6|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000575120.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000572812.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000574466.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000576827.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000570445.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2
hg19_v2_chr19_-_19754354_19754370	0.669632	GLI3	ENST00000587238.1|GMIP|ENSG00000089639.6|GEM interacting protein
hg19_v2_chr1_+_1551220_1551320	0.669208	GLI3	ENST00000378712.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2
hg19_v2_chr1_-_26233423_26233482	0.66881	GLI3	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr22_+_39410088_39410088	0.665669	GLI3	ENST00000361441.4|APOBEC3C|ENSG00000244509.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C
hg19_v2_chr19_+_37960240_37960299	0.664894	GLI3	ENST00000388801.3|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chrX_-_47489244_47489364	0.664157	GLI3	ENST00000469388.1|CFP|ENSG00000126759.8|complement factor properdin 	ENST00000396992.3|CFP|ENSG00000126759.8|complement factor properdin 	ENST00000377005.2|CFP|ENSG00000126759.8|complement factor properdin
hg19_v2_chr8_-_28243590_28243660	0.664028	GLI3	ENST00000523095.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000522795.1|ZNF395|ENSG00000186918.9|zinc finger protein 395
hg19_v2_chr20_+_43343886_43344020	0.661975	GLI3	ENST00000190983.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr3_-_43663389_43663511	0.660791	GLI3	ENST00000444344.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000456438.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000350459.4|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000396091.3|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000451430.2|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000428472.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000414522.2|ANO10|ENSG00000160746.8|anoctamin 10
hg19_v2_chr7_+_2687173_2687337	0.659512	GLI3	ENST00000403167.1|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr19_+_35491174_35491242	0.658673	GLI3	ENST00000317991.5|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A 	ENST00000504615.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A
hg19_v2_chr15_+_91478493_91478551	0.657241	GLI3	ENST00000418476.2|UNC45A|ENSG00000140553.12|unc-45 homolog A (C. elegans)
hg19_v2_chr14_+_52164820_52164841	0.653782	GLI3	ENST00000554167.1|FRMD6|ENSG00000139926.11|FERM domain containing 6
hg19_v2_chr19_+_35491330_35491373	0.65368	GLI3	ENST00000411896.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A 	ENST00000424536.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A
hg19_v2_chr14_+_29236269_29236287	0.653145	GLI3	ENST00000313071.4|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr22_-_23922410_23922446	0.652989	GLI3	ENST00000249053.3|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1
hg19_v2_chr12_-_54778471_54778528	0.65233	GLI3	ENST00000550120.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000394313.2|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000547210.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr9_-_123676827_123676865	0.652322	GLI3	ENST00000546084.1|TRAF1|ENSG00000056558.6|TNF receptor-associated factor 1
hg19_v2_chr11_-_12030629_12030644	0.652003	GLI3	ENST00000396505.2|DKK3|ENSG00000050165.13|dickkopf WNT signaling pathway inhibitor 3
hg19_v2_chr7_-_45026159_45026188	0.651331	GLI3	ENST00000584327.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000438705.3|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding)
hg19_v2_chr12_+_130646999_130647019	0.650874	GLI3	ENST00000539839.1|FZD10|ENSG00000111432.4|frizzled family receptor 10 	ENST00000229030.4|FZD10|ENSG00000111432.4|frizzled family receptor 10
hg19_v2_chr22_+_48027423_48027466	0.649464	GLI3	ENST00000423737.1|RP11-191L9.4|ENSG00000224271.1|RP11-191L9.4
hg19_v2_chr1_+_243419306_243419422	0.64776	GLI3	ENST00000355875.4|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8 	ENST00000391846.1|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8 	ENST00000366541.3|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8 	ENST00000343783.6|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8
hg19_v2_chr1_-_47407111_47407128	0.64501	GLI3	ENST00000371904.4|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11
hg19_v2_chr1_+_40420802_40420836	0.642226	GLI3	ENST00000372811.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000420632.2|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000434861.1|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000372809.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A
hg19_v2_chr8_+_10383039_10383057	0.640462	GLI3	ENST00000328655.3|PRSS55|ENSG00000184647.6|protease, serine, 55 	ENST00000522210.1|PRSS55|ENSG00000184647.6|protease, serine, 55
hg19_v2_chr8_-_145013711_145013786	0.638204	GLI3	ENST00000345136.3|PLEC|ENSG00000178209.10|plectin
hg19_v2_chr1_+_154947148_154947175	0.637663	GLI3	ENST00000368436.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B 	ENST00000308987.5|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chr6_-_163148780_163148813	0.637647	GLI3	ENST00000366892.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366898.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366897.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366896.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase
hg19_v2_chr7_-_121784285_121784350	0.637116	GLI3	ENST00000417368.2|AASS|ENSG00000008311.10|aminoadipate-semialdehyde synthase
hg19_v2_chr1_+_154947126_154947147	0.636455	GLI3	ENST00000368439.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chr19_-_40791302_40791443	0.630903	GLI3	ENST00000392038.2|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2 	ENST00000578123.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr9_+_131102925_131103015	0.627947	GLI3	ENST00000372870.1|SLC27A4|ENSG00000167114.8|solute carrier family 27 (fatty acid transporter), member 4 	ENST00000300456.4|SLC27A4|ENSG00000167114.8|solute carrier family 27 (fatty acid transporter), member 4
hg19_v2_chrX_+_151999511_151999561	0.62783	GLI3	ENST00000370274.3|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like 	ENST00000440023.1|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like 	ENST00000432467.1|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like
hg19_v2_chr7_-_45026200_45026273	0.627192	GLI3	ENST00000577700.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000580458.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000579383.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000584686.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000585030.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000582727.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding)
hg19_v2_chr3_-_48672859_48672926	0.627102	GLI3	ENST00000395550.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000455886.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000431739.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000426599.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000383733.3|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000420764.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000337000.8|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6
hg19_v2_chr11_-_117186946_117186981	0.625921	GLI3	ENST00000313005.6|BACE1|ENSG00000186318.12|beta-site APP-cleaving enzyme 1 	ENST00000528053.1|BACE1|ENSG00000186318.12|beta-site APP-cleaving enzyme 1
hg19_v2_chr16_+_27325202_27325313	0.625205	GLI3	ENST00000395762.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000562142.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000561742.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000543915.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000449195.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000380922.3|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000563002.1|IL4R|ENSG00000077238.9|interleukin 4 receptor
hg19_v2_chr1_-_11865982_11866005	0.624801	GLI3	ENST00000418034.1|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr6_+_46620676_46620696	0.624433	GLI3	ENST00000371347.5|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27 	ENST00000411689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr2_+_173940163_173940183	0.623074	GLI3	ENST00000539448.1|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT
hg19_v2_chr19_+_30863271_30863338	0.619406	GLI3	ENST00000355537.3|ZNF536|ENSG00000198597.4|zinc finger protein 536
hg19_v2_chr15_-_49447771_49447822	0.618262	GLI3	ENST00000558843.1|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2 	ENST00000542928.1|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2 	ENST00000561248.1|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2
hg19_v2_chr8_+_15397732_15397792	0.618114	GLI3	ENST00000382020.4|TUSC3|ENSG00000104723.16|tumor suppressor candidate 3 	ENST00000506802.1|TUSC3|ENSG00000104723.16|tumor suppressor candidate 3 	ENST00000509380.1|TUSC3|ENSG00000104723.16|tumor suppressor candidate 3 	ENST00000503731.1|TUSC3|ENSG00000104723.16|tumor suppressor candidate 3
hg19_v2_chr12_-_52887034_52887049	0.617076	GLI3	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr5_-_132113036_132113061	0.616508	GLI3	ENST00000378706.1|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr5_+_6633456_6633529	0.616476	GLI3	ENST00000274192.5|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)
hg19_v2_chr3_+_101568349_101568365	0.616093	GLI3	ENST00000326151.5|NFKBIZ|ENSG00000144802.7|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 	ENST00000326172.5|NFKBIZ|ENSG00000144802.7|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta
hg19_v2_chr18_-_44544607_44544607	0.61606	GLI3	ENST00000591973.2|TCEB3CL2|ENSG00000266996.2|transcription elongation factor B polypeptide 3C-like 2
hg19_v2_chr10_-_77161004_77161176	0.614514	GLI3	ENST00000418818.2|RP11-399K21.11|ENSG00000270087.1|RP11-399K21.11
hg19_v2_chr20_-_50722183_50722217	0.613681	GLI3	ENST00000371523.4|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr19_-_51336443_51336443	0.613585	GLI3	ENST00000598673.1|KLK15|ENSG00000174562.9|kallikrein-related peptidase 15
hg19_v2_chr17_-_47286729_47286764	0.611227	GLI3	ENST00000300406.2|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 	ENST00000511277.1|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 	ENST00000511673.1|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
hg19_v2_chr17_+_7621045_7621079	0.60988	GLI3	ENST00000570791.1|DNAH2|ENSG00000183914.10|dynein, axonemal, heavy chain 2
hg19_v2_chr5_+_6633534_6633581	0.609694	GLI3	ENST00000537411.1|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) 	ENST00000538824.1|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)
hg19_v2_chr3_-_197026152_197026203	0.609531	GLI3	ENST00000419354.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chrX_-_40506766_40506824	0.607692	GLI3	ENST00000378421.1|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000440784.2|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000327877.5|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000378426.1|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000378418.2|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38
hg19_v2_chr11_-_3078616_3078667	0.606287	GLI3	ENST00000401769.3|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000278224.9|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000397114.3|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000380525.4|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase
hg19_v2_chr17_-_33814851_33814890	0.605807	GLI3	ENST00000449046.1|SLFN12L|ENSG00000205045.4|schlafen family member 12-like 	ENST00000260908.7|SLFN12L|ENSG00000205045.4|schlafen family member 12-like
hg19_v2_chr18_-_31803435_31803515	0.603872	GLI3	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr10_+_18948311_18948417	0.603647	GLI3	ENST00000377275.3|ARL5B|ENSG00000165997.4|ADP-ribosylation factor-like 5B
hg19_v2_chr2_-_136875712_136875735	0.60335	GLI3	ENST00000241393.3|CXCR4|ENSG00000121966.6|chemokine (C-X-C motif) receptor 4
hg19_v2_chr7_+_23145884_23145917	0.602797	GLI3	ENST00000409689.1|KLHL7|ENSG00000122550.13|kelch-like family member 7 	ENST00000410047.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr14_+_19553365_19553365	0.596615	GLI3	ENST00000409832.3|POTEG|ENSG00000222036.3|POTE ankyrin domain family, member G
hg19_v2_chr2_+_113479063_113479063	0.591422	GLI3	ENST00000327581.4|NT5DC4|ENSG00000144130.7|5'-nucleotidase domain containing 4
hg19_v2_chr22_-_18507279_18507364	0.591223	GLI3	ENST00000441493.2|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000444520.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000207726.7|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000429452.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3
hg19_v2_chr19_-_43709817_43709926	0.590056	GLI3	ENST00000433626.2|PSG4|ENSG00000243137.3|pregnancy specific beta-1-glycoprotein 4 	ENST00000405312.3|PSG4|ENSG00000243137.3|pregnancy specific beta-1-glycoprotein 4
hg19_v2_chr22_-_20255212_20255212	0.589469	GLI3	ENST00000416372.1|RTN4R|ENSG00000040608.9|reticulon 4 receptor
hg19_v2_chr14_+_94577074_94577161	0.587563	GLI3	ENST00000444961.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000448882.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557098.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000554800.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000556544.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000298902.5|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555819.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557634.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555744.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27
hg19_v2_chr19_-_51522955_51523020	0.587278	GLI3	ENST00000358789.3|KLK10|ENSG00000129451.7|kallikrein-related peptidase 10
hg19_v2_chr20_+_36888551_36888662	0.586911	GLI3	ENST00000418004.1|BPI|ENSG00000101425.8|bactericidal/permeability-increasing protein 	ENST00000451435.1|BPI|ENSG00000101425.8|bactericidal/permeability-increasing protein
hg19_v2_chr17_+_36283971_36284016	0.584578	GLI3	ENST00000327454.6|TBC1D3F|ENSG00000185128.11|TBC1 domain family, member 3F 	ENST00000378174.5|TBC1D3F|ENSG00000185128.11|TBC1 domain family, member 3F
hg19_v2_chr12_-_53171128_53171131	0.581705	GLI3	ENST00000332411.2|KRT76|ENSG00000185069.2|keratin 76
hg19_v2_chr20_-_36889127_36889174	0.581588	GLI3	ENST00000279024.4|KIAA1755|ENSG00000149633.7|KIAA1755
hg19_v2_chr8_-_145028013_145028088	0.579797	GLI3	ENST00000354958.2|PLEC|ENSG00000178209.10|plectin
hg19_v2_chrX_+_48911090_48911113	0.579678	GLI3	ENST00000597275.1|CCDC120|ENSG00000147144.8|coiled-coil domain containing 120
hg19_v2_chrX_-_134186144_134186228	0.576355	GLI3	ENST00000370775.2|FAM127B|ENSG00000203950.6|family with sequence similarity 127, member B
hg19_v2_chr13_+_32313658_32313679	0.575304	GLI3	ENST00000380314.1|RXFP2|ENSG00000133105.3|relaxin/insulin-like family peptide receptor 2 	ENST00000298386.2|RXFP2|ENSG00000133105.3|relaxin/insulin-like family peptide receptor 2
hg19_v2_chr1_+_15479054_15479073	0.574855	GLI3	ENST00000376014.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000451326.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr9_+_90112590_90112611	0.574818	GLI3	ENST00000472284.1|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr2_-_24308051_24308085	0.574055	GLI3	ENST00000238721.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3 	ENST00000335934.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chr2_+_131769256_131769328	0.573788	GLI3	ENST00000355771.3|ARHGEF4|ENSG00000136002.12|Rho guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr21_-_33651324_33651380	0.571412	GLI3	ENST00000290130.3|MIS18A|ENSG00000159055.3|MIS18 kinetochore protein A
hg19_v2_chr1_-_155942086_155942145	0.569427	GLI3	ENST00000368315.4|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr16_+_84224740_84224746	0.566569	GLI3	ENST00000268624.3|ADAD2|ENSG00000140955.6|adenosine deaminase domain containing 2
hg19_v2_chr2_+_192110199_192110254	0.56547	GLI3	ENST00000304164.4|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr5_-_150521192_150521229	0.565047	GLI3	ENST00000523714.1|ANXA6|ENSG00000197043.9|annexin A6 	ENST00000521749.1|ANXA6|ENSG00000197043.9|annexin A6
hg19_v2_chr22_-_24322660_24322660	0.564657	GLI3	ENST00000404092.1|DDT|ENSG00000099977.9|D-dopachrome tautomerase
hg19_v2_chr14_+_105941118_105941196	0.563555	GLI3	ENST00000550577.1|CRIP2|ENSG00000182809.6|cysteine-rich protein 2 	ENST00000538259.2|CRIP2|ENSG00000182809.6|cysteine-rich protein 2
hg19_v2_chr5_+_150157444_150157508	0.563086	GLI3	ENST00000526627.1|SMIM3|ENSG00000256235.1|small integral membrane protein 3
hg19_v2_chr12_+_88429223_88429301	0.562253	GLI3	ENST00000356891.3|C12orf29|ENSG00000133641.13|chromosome 12 open reading frame 29
hg19_v2_chr4_-_48908737_48908799	0.560283	GLI3	ENST00000381464.2|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr19_+_45147098_45147223	0.558495	GLI3	ENST00000425690.3|PVR|ENSG00000073008.10|poliovirus receptor 	ENST00000344956.4|PVR|ENSG00000073008.10|poliovirus receptor 	ENST00000403059.4|PVR|ENSG00000073008.10|poliovirus receptor
hg19_v2_chr7_-_158497431_158497529	0.558494	GLI3	ENST00000449727.2|NCAPG2|ENSG00000146918.15|non-SMC condensin II complex, subunit G2 	ENST00000409339.3|NCAPG2|ENSG00000146918.15|non-SMC condensin II complex, subunit G2 	ENST00000409423.1|NCAPG2|ENSG00000146918.15|non-SMC condensin II complex, subunit G2 	ENST00000356309.3|NCAPG2|ENSG00000146918.15|non-SMC condensin II complex, subunit G2
hg19_v2_chr19_-_2051223_2051252	0.557351	GLI3	ENST00000309340.7|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000589534.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000250896.3|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000589509.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr14_-_106478603_106478603	0.555607	GLI3	ENST00000390596.2|IGHV4-4|ENSG00000211936.2|immunoglobulin heavy variable 4-4
hg19_v2_chr10_-_79398250_79398353	0.554726	GLI3	ENST00000286627.5|KCNMA1|ENSG00000156113.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
hg19_v2_chr13_-_46756351_46756459	0.55444	GLI3	ENST00000323076.2|LCP1|ENSG00000136167.9|lymphocyte cytosolic protein 1 (L-plastin)
hg19_v2_chr17_+_7210898_7210918	0.552766	GLI3	ENST00000572815.1|EIF5A|ENSG00000132507.13|eukaryotic translation initiation factor 5A
hg19_v2_chr10_-_7661623_7661637	0.551901	GLI3	ENST00000298441.6|ITIH5|ENSG00000123243.10|inter-alpha-trypsin inhibitor heavy chain family, member 5
hg19_v2_chrX_+_52780318_52780346	0.54783	GLI3	ENST00000375515.3|SSX2B|ENSG00000157950.10|synovial sarcoma, X breakpoint 2B 	ENST00000276049.6|SSX2B|ENSG00000157950.10|synovial sarcoma, X breakpoint 2B
hg19_v2_chr7_-_151511911_151511962	0.547701	GLI3	ENST00000392801.2|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr17_-_73851285_73851501	0.547456	GLI3	ENST00000589642.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000593002.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000590221.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000344296.4|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000587374.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000585462.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000433525.2|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000254806.3|WBP2|ENSG00000132471.7|WW domain binding protein 2
hg19_v2_chr21_-_47604318_47604390	0.546246	GLI3	ENST00000291672.5|SPATC1L|ENSG00000160284.10|spermatogenesis and centriole associated 1-like 	ENST00000330205.6|SPATC1L|ENSG00000160284.10|spermatogenesis and centriole associated 1-like
hg19_v2_chr2_-_171627269_171627285	0.546141	GLI3	ENST00000442456.1|AC007405.4|ENSG00000234350.1|AC007405.4
hg19_v2_chr15_+_59063478_59063561	0.545775	GLI3	ENST00000559228.1|FAM63B|ENSG00000128923.6|family with sequence similarity 63, member B 	ENST00000450403.2|FAM63B|ENSG00000128923.6|family with sequence similarity 63, member B
hg19_v2_chrX_-_134156502_134156577	0.544952	GLI3	ENST00000391440.1|FAM127C|ENSG00000212747.3|family with sequence similarity 127, member C
hg19_v2_chr21_+_45905448_45905460	0.54389	GLI3	ENST00000449713.1|AP001065.15|ENSG00000228709.1|AP001065.15
hg19_v2_chr1_-_153585539_153585559	0.542611	GLI3	ENST00000368706.4|S100A16|ENSG00000188643.6|S100 calcium binding protein A16
hg19_v2_chr17_+_7905912_7905945	0.542233	GLI3	ENST00000254854.4|GUCY2D|ENSG00000132518.6|guanylate cyclase 2D, membrane (retina-specific)
hg19_v2_chr22_+_38349724_38349734	0.542027	GLI3	ENST00000470701.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F
hg19_v2_chr10_-_77161533_77161590	0.541084	GLI3	ENST00000535216.1|ZNF503|ENSG00000165655.14|zinc finger protein 503
hg19_v2_chr19_-_49552006_49552006	0.540768	GLI3	ENST00000391869.3|CGB1|ENSG00000267631.3|chorionic gonadotropin, beta polypeptide 1
hg19_v2_chrX_-_152939780_152939823	0.540187	GLI3	ENST00000370142.1|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase 	ENST00000393831.2|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase 	ENST00000447676.2|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase
hg19_v2_chr8_-_122653630_122653661	0.538688	GLI3	ENST00000303924.4|HAS2|ENSG00000170961.6|hyaluronan synthase 2
hg19_v2_chr4_-_20985632_20985664	0.537418	GLI3	ENST00000359001.5|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr4_-_48908805_48908821	0.537085	GLI3	ENST00000273860.4|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr18_-_44556449_44556449	0.536961	GLI3	ENST00000330682.2|TCEB3C|ENSG00000183791.4|transcription elongation factor B polypeptide 3C (elongin A3)
hg19_v2_chr9_+_103204553_103204560	0.536307	GLI3	ENST00000502978.1|MSANTD3-TMEFF1|ENSG00000251349.3|MSANTD3-TMEFF1 readthrough 	ENST00000334943.6|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr1_-_201368707_201368760	0.535522	GLI3	ENST00000391967.2|LAD1|ENSG00000159166.9|ladinin 1
hg19_v2_chr17_+_75369167_75369272	0.533842	GLI3	ENST00000423034.2|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr19_-_19754404_19754478	0.530901	GLI3	ENST00000587205.1|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000445806.2|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000203556.4|GMIP|ENSG00000089639.6|GEM interacting protein
hg19_v2_chr12_+_6602517_6602559	0.529015	GLI3	ENST00000315579.5|NCAPD2|ENSG00000010292.8|non-SMC condensin I complex, subunit D2 	ENST00000539714.1|NCAPD2|ENSG00000010292.8|non-SMC condensin I complex, subunit D2
hg19_v2_chr8_-_144416965_144417066	0.528188	GLI3	ENST00000523676.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000519591.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000522043.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000329245.4|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial
hg19_v2_chr9_+_4839762_4839779	0.528052	GLI3	ENST00000448872.2|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1 	ENST00000441844.1|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1
hg19_v2_chr10_+_27444268_27444301	0.526381	GLI3	ENST00000375940.4|MASTL|ENSG00000120539.10|microtubule associated serine/threonine kinase-like 	ENST00000342386.6|MASTL|ENSG00000120539.10|microtubule associated serine/threonine kinase-like
hg19_v2_chr11_+_44117741_44117798	0.523827	GLI3	ENST00000395673.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2 	ENST00000343631.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2
hg19_v2_chr4_-_7069760_7069924	0.523631	GLI3	ENST00000264954.4|GRPEL1|ENSG00000109519.8|GrpE-like 1, mitochondrial (E. coli)
hg19_v2_chr8_-_86132568_86132650	0.522359	GLI3	ENST00000321777.5|C8orf59|ENSG00000176731.7|chromosome 8 open reading frame 59 	ENST00000458398.2|C8orf59|ENSG00000176731.7|chromosome 8 open reading frame 59 	ENST00000431163.2|C8orf59|ENSG00000176731.7|chromosome 8 open reading frame 59 	ENST00000417663.2|C8orf59|ENSG00000176731.7|chromosome 8 open reading frame 59 	ENST00000524353.1|C8orf59|ENSG00000176731.7|chromosome 8 open reading frame 59 	ENST00000421308.2|C8orf59|ENSG00000176731.7|chromosome 8 open reading frame 59 	ENST00000545322.1|C8orf59|ENSG00000176731.7|chromosome 8 open reading frame 59 	ENST00000518562.1|C8orf59|ENSG00000176731.7|chromosome 8 open reading frame 59
hg19_v2_chr9_-_34637718_34637791	0.520802	GLI3	ENST00000378892.1|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1 	ENST00000277010.4|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1
hg19_v2_chrX_+_153626571_153626627	0.520441	GLI3	ENST00000424325.2|RPL10|ENSG00000147403.12|ribosomal protein L10
hg19_v2_chr12_-_49259643_49259681	0.520322	GLI3	ENST00000309739.5|RND1|ENSG00000172602.5|Rho family GTPase 1
hg19_v2_chr19_+_58962971_58963014	0.520195	GLI3	ENST00000336614.4|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000545523.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000599194.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000598244.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000599193.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000594214.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000391696.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B
hg19_v2_chr4_-_48908822_48908845	0.519604	GLI3	ENST00000508632.1|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr10_+_11059826_11059932	0.518969	GLI3	ENST00000450189.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr6_+_46620705_46620732	0.518792	GLI3	ENST00000452689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr17_+_75450075_75450094	0.518108	GLI3	ENST00000592951.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr22_-_50051151_50051190	0.516819	GLI3	ENST00000400023.1|C22orf34|ENSG00000188511.8|chromosome 22 open reading frame 34 	ENST00000444628.1|C22orf34|ENSG00000188511.8|chromosome 22 open reading frame 34
hg19_v2_chrX_-_52736211_52736239	0.516461	GLI3	ENST00000336777.5|SSX2|ENSG00000241476.3|synovial sarcoma, X breakpoint 2 	ENST00000337502.5|SSX2|ENSG00000241476.3|synovial sarcoma, X breakpoint 2
hg19_v2_chr8_+_90914073_90914087	0.51613	GLI3	ENST00000297438.2|OSGIN2|ENSG00000164823.5|oxidative stress induced growth inhibitor family member 2
hg19_v2_chr5_-_179636153_179636220	0.513066	GLI3	ENST00000361132.4|RASGEF1C|ENSG00000146090.11|RasGEF domain family, member 1C
hg19_v2_chr1_+_15479021_15479053	0.51186	GLI3	ENST00000428417.1|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr19_+_7011509_7011526	0.509479	GLI3	ENST00000377296.3|AC025278.1|ENSG00000204752.3|Uncharacterized protein
hg19_v2_chr11_+_34073269_34073287	0.508067	GLI3	ENST00000389645.3|CAPRIN1|ENSG00000135387.15|cell cycle associated protein 1
hg19_v2_chr18_-_44550534_44550534	0.50753	GLI3	ENST00000451265.1|TCEB3CL|ENSG00000234298.1|transcription elongation factor B polypeptide 3C-like
hg19_v2_chr17_+_8339189_8339285	0.506379	GLI3	ENST00000585098.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000380025.4|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000402554.3|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000584866.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000582490.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr10_+_52751010_52751118	0.506202	GLI3	ENST00000373985.1|PRKG1|ENSG00000185532.10|protein kinase, cGMP-dependent, type I
hg19_v2_chr19_+_10217364_10217409	0.506156	GLI3	ENST00000430370.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chrX_-_52260355_52260363	0.505721	GLI3	ENST00000375602.1|XAGE1A|ENSG00000204379.6|X antigen family, member 1A 	ENST00000399800.3|XAGE1A|ENSG00000204379.6|X antigen family, member 1A
hg19_v2_chr7_-_73668692_73668774	0.503887	GLI3	ENST00000352131.3|RFC2|ENSG00000049541.6|replication factor C (activator 1) 2, 40kDa 	ENST00000055077.3|RFC2|ENSG00000049541.6|replication factor C (activator 1) 2, 40kDa
hg19_v2_chr2_+_131369054_131369054	0.503717	GLI3	ENST00000409602.1|POTEJ|ENSG00000222038.3|POTE ankyrin domain family, member J
hg19_v2_chr17_+_4710391_4710500	0.502799	GLI3	ENST00000263088.6|PLD2|ENSG00000129219.9|phospholipase D2 	ENST00000572940.1|PLD2|ENSG00000129219.9|phospholipase D2
hg19_v2_chr15_-_49447835_49447858	0.502498	GLI3	ENST00000388901.5|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2 	ENST00000299259.6|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2
hg19_v2_chr7_-_99764907_99764924	0.500195	GLI3	ENST00000413800.1|GAL3ST4|ENSG00000197093.6|galactose-3-O-sulfotransferase 4
hg19_v2_chrX_-_148713440_148713568	0.500104	GLI3	ENST00000536359.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A 	ENST00000316916.8|TMEM185A|ENSG00000155984.10|transmembrane protein 185A
hg19_v2_chr16_+_89686991_89687015	0.495601	GLI3	ENST00000393092.3|DPEP1|ENSG00000015413.5|dipeptidase 1 (renal)
hg19_v2_chr3_-_15469006_15469043	0.495314	GLI3	ENST00000443029.1|METTL6|ENSG00000206562.7|methyltransferase like 6 	ENST00000383790.3|METTL6|ENSG00000206562.7|methyltransferase like 6 	ENST00000383789.5|METTL6|ENSG00000206562.7|methyltransferase like 6
hg19_v2_chr3_-_15140629_15140670	0.495312	GLI3	ENST00000507357.1|ZFYVE20|ENSG00000131381.8|zinc finger, FYVE domain containing 20 	ENST00000449050.1|ZFYVE20|ENSG00000131381.8|zinc finger, FYVE domain containing 20 	ENST00000253699.3|ZFYVE20|ENSG00000131381.8|zinc finger, FYVE domain containing 20 	ENST00000435849.3|ZFYVE20|ENSG00000131381.8|zinc finger, FYVE domain containing 20 	ENST00000476527.2|ZFYVE20|ENSG00000131381.8|zinc finger, FYVE domain containing 20
hg19_v2_chr5_-_138739739_138739793	0.494994	GLI3	ENST00000514983.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000507779.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000451821.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000450845.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000509959.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000302091.5|SPATA24|ENSG00000170469.6|spermatogenesis associated 24
hg19_v2_chr3_-_49066811_49066851	0.494654	GLI3	ENST00000442157.1|IMPDH2|ENSG00000178035.7|IMP (inosine 5'-monophosphate) dehydrogenase 2 	ENST00000326739.4|IMPDH2|ENSG00000178035.7|IMP (inosine 5'-monophosphate) dehydrogenase 2
hg19_v2_chr5_+_9546306_9546329	0.494249	GLI3	ENST00000508179.1|SNHG18|ENSG00000250786.1|small nucleolar RNA host gene 18 (non-protein coding)
hg19_v2_chr15_-_76005170_76005197	0.494157	GLI3	ENST00000308508.5|CSPG4|ENSG00000173546.7|chondroitin sulfate proteoglycan 4
hg19_v2_chr15_+_78632666_78632701	0.493993	GLI3	ENST00000299529.6|CRABP1|ENSG00000166426.7|cellular retinoic acid binding protein 1
hg19_v2_chr3_+_57094469_57094469	0.490729	GLI3	ENST00000334325.1|SPATA12|ENSG00000186451.1|spermatogenesis associated 12
hg19_v2_chr9_+_90112741_90112761	0.489697	GLI3	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr7_-_56118981_56119152	0.489172	GLI3	ENST00000419984.2|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000413218.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000424596.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase
hg19_v2_chr1_+_165864821_165864850	0.488968	GLI3	ENST00000470820.1|UCK2|ENSG00000143179.8|uridine-cytidine kinase 2
hg19_v2_chrX_+_49160148_49160148	0.488857	GLI3	ENST00000407599.3|GAGE10|ENSG00000215274.5|G antigen 10
hg19_v2_chr1_+_39456895_39456986	0.488751	GLI3	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr7_+_1126461_1126512	0.487408	GLI3	ENST00000297469.3|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1
hg19_v2_chr17_+_73629500_73629532	0.486984	GLI3	ENST00000375215.3|SMIM5|ENSG00000204323.5|small integral membrane protein 5
hg19_v2_chr11_+_134094508_134094617	0.486707	GLI3	ENST00000281187.5|VPS26B|ENSG00000151502.6|vacuolar protein sorting 26 homolog B (S. pombe) 	ENST00000525095.2|VPS26B|ENSG00000151502.6|vacuolar protein sorting 26 homolog B (S. pombe)
hg19_v2_chr16_+_215965_215984	0.486667	GLI3	ENST00000356815.3|HBM|ENSG00000206177.2|hemoglobin, mu
hg19_v2_chr22_-_23922448_23922495	0.484546	GLI3	ENST00000438703.1|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1 	ENST00000330377.2|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1
hg19_v2_chr11_-_73471655_73471767	0.483996	GLI3	ENST00000400470.2|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family
hg19_v2_chr14_-_50778872_50778928	0.483962	GLI3	ENST00000555610.1|L2HGDH|ENSG00000087299.7|L-2-hydroxyglutarate dehydrogenase 	ENST00000261699.4|L2HGDH|ENSG00000087299.7|L-2-hydroxyglutarate dehydrogenase
hg19_v2_chr1_-_243418621_243418648	0.482925	GLI3	ENST00000366544.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa 	ENST00000366543.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr11_+_89764274_89764274	0.481739	GLI3	ENST00000448984.1|TRIM49C|ENSG00000204449.2|tripartite motif containing 49C 	ENST00000432771.1|TRIM49C|ENSG00000204449.2|tripartite motif containing 49C
hg19_v2_chr12_-_122750957_122751001	0.480976	GLI3	ENST00000451053.2|VPS33A|ENSG00000139719.5|vacuolar protein sorting 33 homolog A (S. cerevisiae)
hg19_v2_chr5_-_150460914_150460997	0.48076	GLI3	ENST00000389378.2|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr19_-_10679644_10679661	0.480194	GLI3	ENST00000393599.2|CDKN2D|ENSG00000129355.6|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
hg19_v2_chr1_+_1950763_1950815	0.480135	GLI3	ENST00000378585.4|GABRD|ENSG00000187730.6|gamma-aminobutyric acid (GABA) A receptor, delta
hg19_v2_chr6_+_30689350_30689366	0.478332	GLI3	ENST00000330914.3|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr16_+_68679193_68679253	0.474708	GLI3	ENST00000581171.1|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr16_-_2059797_2059837	0.474341	GLI3	ENST00000563630.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr3_+_11314099_11314122	0.472769	GLI3	ENST00000446450.2|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354956.5|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354449.3|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000419112.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr11_+_1718425_1718425	0.472005	GLI3	ENST00000382160.1|KRTAP5-6|ENSG00000205864.1|keratin associated protein 5-6
hg19_v2_chr22_-_30234218_30234276	0.469737	GLI3	ENST00000307790.3|ASCC2|ENSG00000100325.10|activating signal cointegrator 1 complex subunit 2 	ENST00000542393.1|ASCC2|ENSG00000100325.10|activating signal cointegrator 1 complex subunit 2 	ENST00000397771.2|ASCC2|ENSG00000100325.10|activating signal cointegrator 1 complex subunit 2
hg19_v2_chr19_-_41196534_41196568	0.46947	GLI3	ENST00000252891.4|NUMBL|ENSG00000105245.5|numb homolog (Drosophila)-like
hg19_v2_chrX_-_23761317_23761419	0.467297	GLI3	ENST00000492081.1|ACOT9|ENSG00000123130.12|acyl-CoA thioesterase 9 	ENST00000379303.5|ACOT9|ENSG00000123130.12|acyl-CoA thioesterase 9 	ENST00000336430.7|ACOT9|ENSG00000123130.12|acyl-CoA thioesterase 9
hg19_v2_chr17_-_39968855_39968880	0.467136	GLI3	ENST00000355468.3|LEPREL4|ENSG00000141696.8|leprecan-like 4 	ENST00000590496.1|LEPREL4|ENSG00000141696.8|leprecan-like 4
hg19_v2_chr3_-_137851220_137851236	0.465281	GLI3	ENST00000236709.3|A4GNT|ENSG00000118017.3|alpha-1,4-N-acetylglucosaminyltransferase
hg19_v2_chr7_+_916183_916204	0.462926	GLI3	ENST00000265857.3|GET4|ENSG00000239857.2|golgi to ER traffic protein 4 homolog (S. cerevisiae)
hg19_v2_chr16_+_2014993_2015049	0.46229	GLI3	ENST00000564014.1|SNHG9|ENSG00000255198.3|small nucleolar RNA host gene 9 (non-protein coding)
hg19_v2_chr19_-_2256405_2256428	0.459634	GLI3	ENST00000300961.6|JSRP1|ENSG00000167476.6|junctional sarcoplasmic reticulum protein 1
hg19_v2_chr1_+_40505891_40505995	0.459576	GLI3	ENST00000372797.3|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000372802.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000449311.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast)
hg19_v2_chr6_-_36725157_36725188	0.458999	GLI3	ENST00000393189.2|CPNE5|ENSG00000124772.7|copine V
hg19_v2_chr21_+_45879814_45879814	0.458892	GLI3	ENST00000596691.1|LRRC3DN|ENSG00000269430.1|LRRC3 downstream neighbor (non-protein coding)
hg19_v2_chr6_-_80657292_80657301	0.458596	GLI3	ENST00000369816.4|ELOVL4|ENSG00000118402.5|ELOVL fatty acid elongase 4
hg19_v2_chr8_-_42623924_42623935	0.458303	GLI3	ENST00000276410.2|CHRNA6|ENSG00000147434.4|cholinergic receptor, nicotinic, alpha 6 (neuronal)
hg19_v2_chr9_+_90112117_90112164	0.457205	GLI3	ENST00000358077.5|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr4_+_3344141_3344178	0.456208	GLI3	ENST00000306648.7|RGS12|ENSG00000159788.14|regulator of G-protein signaling 12
hg19_v2_chr2_+_171673072_171673225	0.454938	GLI3	ENST00000358196.3|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa) 	ENST00000375272.1|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa)
hg19_v2_chr19_+_33622996_33623026	0.454276	GLI3	ENST00000592765.1|WDR88|ENSG00000166359.6|WD repeat domain 88 	ENST00000361680.2|WDR88|ENSG00000166359.6|WD repeat domain 88 	ENST00000355868.3|WDR88|ENSG00000166359.6|WD repeat domain 88
hg19_v2_chr4_+_148402069_148402099	0.454244	GLI3	ENST00000358556.4|EDNRA|ENSG00000151617.11|endothelin receptor type A 	ENST00000339690.5|EDNRA|ENSG00000151617.11|endothelin receptor type A 	ENST00000511804.1|EDNRA|ENSG00000151617.11|endothelin receptor type A 	ENST00000324300.5|EDNRA|ENSG00000151617.11|endothelin receptor type A
hg19_v2_chr13_-_88463487_88463524	0.453912	GLI3	ENST00000606221.1|RP11-471M2.3|ENSG00000272046.1|RP11-471M2.3
hg19_v2_chr11_-_65629497_65629528	0.453263	GLI3	ENST00000532134.1|CFL1|ENSG00000172757.8|cofilin 1 (non-muscle)
hg19_v2_chr1_+_36554470_36554519	0.452883	GLI3	ENST00000373178.4|ADPRHL2|ENSG00000116863.10|ADP-ribosylhydrolase like 2
hg19_v2_chrX_+_52511761_52511769	0.452818	GLI3	ENST00000399795.3|XAGE1C|ENSG00000183461.12|X antigen family, member 1C 	ENST00000375589.1|XAGE1C|ENSG00000183461.12|X antigen family, member 1C
hg19_v2_chr14_-_51297197_51297327	0.451218	GLI3	ENST00000382043.4|NIN|ENSG00000100503.19|ninein (GSK3B interacting protein)
hg19_v2_chr2_+_27851863_27851930	0.451202	GLI3	ENST00000264718.3|GPN1|ENSG00000198522.9|GPN-loop GTPase 1 	ENST00000610189.1|GPN1|ENSG00000198522.9|GPN-loop GTPase 1
hg19_v2_chrX_+_51928002_51928017	0.44909	GLI3	ENST00000375626.3|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr1_-_228353112_228353213	0.448033	GLI3	ENST00000366713.1|IBA57-AS1|ENSG00000203684.5|IBA57 antisense RNA 1 (head to head)
hg19_v2_chr12_-_118498958_118499021	0.446322	GLI3	ENST00000315436.3|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr10_+_43633914_43633935	0.446281	GLI3	ENST00000374466.3|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2 	ENST00000374464.1|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2
hg19_v2_chr8_+_94929110_94929167	0.446083	GLI3	ENST00000520728.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr19_+_7599128_7599150	0.44592	GLI3	ENST00000545201.2|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr12_+_31226779_31226834	0.443635	GLI3	ENST00000542838.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000407793.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000251758.5|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000228264.6|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000438391.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000415475.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000545668.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000350437.4|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
hg19_v2_chr5_-_150460539_150460640	0.443109	GLI3	ENST00000520931.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000520695.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000521591.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000518977.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr1_-_20834586_20834656	0.441114	GLI3	ENST00000264198.3|MUL1|ENSG00000090432.5|mitochondrial E3 ubiquitin protein ligase 1
hg19_v2_chr10_-_77161650_77161664	0.440272	GLI3	ENST00000372524.4|ZNF503|ENSG00000165655.14|zinc finger protein 503
hg19_v2_chr1_-_40042416_40042470	0.439723	GLI3	ENST00000372857.3|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form) 	ENST00000372856.3|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form) 	ENST00000531243.2|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form) 	ENST00000451091.2|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form)
hg19_v2_chr10_-_46970573_46970610	0.438451	GLI3	ENST00000374325.3|SYT15|ENSG00000204176.9|synaptotagmin XV
hg19_v2_chr16_+_610407_610429	0.437977	GLI3	ENST00000409413.3|C16orf11|ENSG00000161992.5|chromosome 16 open reading frame 11
hg19_v2_chr10_-_79398127_79398156	0.437267	GLI3	ENST00000372443.1|KCNMA1|ENSG00000156113.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
hg19_v2_chr11_-_59436453_59436530	0.437177	GLI3	ENST00000300146.9|PATL1|ENSG00000166889.13|protein associated with topoisomerase II homolog 1 (yeast)
hg19_v2_chr9_+_90112767_90112808	0.436455	GLI3	ENST00000408954.3|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr9_+_138391805_138391830	0.436316	GLI3	ENST00000371785.1|MRPS2|ENSG00000122140.6|mitochondrial ribosomal protein S2
hg19_v2_chrX_-_51812268_51812368	0.436183	GLI3	ENST00000486010.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000497164.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000360134.6|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000485287.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000335504.5|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000431659.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B
hg19_v2_chr10_-_75193308_75193325	0.436169	GLI3	ENST00000299432.2|MSS51|ENSG00000166343.5|MSS51 mitochondrial translational activator
hg19_v2_chr16_+_56691606_56691719	0.433791	GLI3	ENST00000334350.6|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr6_+_28227063_28227117	0.432295	GLI3	ENST00000343684.3|NKAPL|ENSG00000189134.3|NFKB activating protein-like
hg19_v2_chr19_-_39226045_39226071	0.431259	GLI3	ENST00000597987.1|CAPN12|ENSG00000182472.4|calpain 12 	ENST00000595177.1|CAPN12|ENSG00000182472.4|calpain 12
hg19_v2_chr19_-_40896081_40896094	0.430201	GLI3	ENST00000291823.2|HIPK4|ENSG00000160396.8|homeodomain interacting protein kinase 4
hg19_v2_chr11_-_111783919_111783937	0.42914	GLI3	ENST00000531198.1|CRYAB|ENSG00000109846.3|crystallin, alpha B 	ENST00000533879.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr12_+_113354341_113354422	0.42806	GLI3	ENST00000553152.1|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr2_+_9614652_9614704	0.427081	GLI3	ENST00000497473.1|IAH1|ENSG00000134330.14|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 	ENST00000470914.1|IAH1|ENSG00000134330.14|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 	ENST00000481367.1|IAH1|ENSG00000134330.14|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 	ENST00000545602.1|IAH1|ENSG00000134330.14|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)
hg19_v2_chr15_-_43212836_43212991	0.425818	GLI3	ENST00000566931.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2 	ENST00000564431.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2 	ENST00000567274.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2
hg19_v2_chr2_-_27294500_27294641	0.424408	GLI3	ENST00000447619.1|OST4|ENSG00000228474.1|oligosaccharyltransferase 4 homolog (S. cerevisiae) 	ENST00000429985.1|OST4|ENSG00000228474.1|oligosaccharyltransferase 4 homolog (S. cerevisiae) 	ENST00000456793.1|OST4|ENSG00000228474.1|oligosaccharyltransferase 4 homolog (S. cerevisiae)
hg19_v2_chr3_-_53878644_53878811	0.421969	GLI3	ENST00000481668.1|CHDH|ENSG00000016391.6|choline dehydrogenase 	ENST00000467802.1|CHDH|ENSG00000016391.6|choline dehydrogenase
hg19_v2_chr1_+_214163033_214163073	0.42191	GLI3	ENST00000607425.1|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr19_+_7598890_7599090	0.421312	GLI3	ENST00000221249.6|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601668.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601001.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr19_+_41856816_41856871	0.420663	GLI3	ENST00000539627.1|TMEM91|ENSG00000142046.10|transmembrane protein 91
hg19_v2_chr19_+_10217270_10217321	0.419934	GLI3	ENST00000446223.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr16_-_89043605_89043625	0.419373	GLI3	ENST00000268679.4|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chr1_-_155177677_155177739	0.419201	GLI3	ENST00000368378.3|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000541990.1|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000457183.2|THBS3|ENSG00000169231.9|thrombospondin 3
hg19_v2_chr14_+_61788429_61788501	0.418866	GLI3	ENST00000332981.5|PRKCH|ENSG00000027075.9|protein kinase C, eta
hg19_v2_chr3_-_192635943_192635955	0.417857	GLI3	ENST00000392452.2|MB21D2|ENSG00000180611.6|Mab-21 domain containing 2
hg19_v2_chr17_+_42219383_42219424	0.415288	GLI3	ENST00000245382.6|C17orf53|ENSG00000125319.10|chromosome 17 open reading frame 53
hg19_v2_chr11_+_118478313_118478358	0.413543	GLI3	ENST00000356063.5|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr6_-_31763721_31763734	0.413093	GLI3	ENST00000375663.3|VARS|ENSG00000204394.8|valyl-tRNA synthetase
hg19_v2_chr8_-_67525524_67525543	0.412357	GLI3	ENST00000517885.1|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr2_+_201170770_201170882	0.411912	GLI3	ENST00000409988.3|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like 	ENST00000409385.1|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr3_-_127542051_127542098	0.409753	GLI3	ENST00000398104.1|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr11_-_2444242_2444275	0.409229	GLI3	ENST00000533881.1|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5 	ENST00000533060.1|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5 	ENST00000528453.1|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5 	ENST00000155858.6|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5 	ENST00000452833.1|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5
hg19_v2_chr6_+_111303218_111303301	0.408704	GLI3	ENST00000441448.2|RPF2|ENSG00000197498.8|ribosome production factor 2 homolog (S. cerevisiae)
hg19_v2_chr7_+_150688083_150688106	0.407396	GLI3	ENST00000297494.3|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell)
hg19_v2_chr3_+_42190714_42190787	0.405561	GLI3	ENST00000449246.1|TRAK1|ENSG00000182606.10|trafficking protein, kinesin binding 1
hg19_v2_chr7_+_1126437_1126458	0.405548	GLI3	ENST00000413368.1|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1 	ENST00000397092.1|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1
hg19_v2_chr16_+_29818857_29819023	0.404131	GLI3	ENST00000567444.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor)
hg19_v2_chr17_-_7017968_7018021	0.401552	GLI3	ENST00000355035.5|ASGR2|ENSG00000161944.12|asialoglycoprotein receptor 2
hg19_v2_chr20_+_32319463_32319463	0.401545	GLI3	ENST00000342427.2|ZNF341|ENSG00000131061.9|zinc finger protein 341 	ENST00000375200.1|ZNF341|ENSG00000131061.9|zinc finger protein 341
hg19_v2_chr6_-_34073743_34073761	0.401402	GLI3	ENST00000609222.1|GRM4|ENSG00000124493.9|glutamate receptor, metabotropic 4
hg19_v2_chr6_+_116601265_116601288	0.399937	GLI3	ENST00000452085.3|DSE|ENSG00000111817.12|dermatan sulfate epimerase
hg19_v2_chr3_-_72496035_72496069	0.398696	GLI3	ENST00000477973.2|RYBP|ENSG00000163602.9|RING1 and YY1 binding protein
hg19_v2_chr17_+_42219267_42219329	0.398601	GLI3	ENST00000319977.4|C17orf53|ENSG00000125319.10|chromosome 17 open reading frame 53 	ENST00000585683.1|C17orf53|ENSG00000125319.10|chromosome 17 open reading frame 53
hg19_v2_chr11_+_61957687_61957689	0.397871	GLI3	ENST00000306238.3|SCGB1D1|ENSG00000168515.3|secretoglobin, family 1D, member 1
hg19_v2_chr2_-_24307635_24307660	0.397375	GLI3	ENST00000313482.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chr17_-_73149921_73149971	0.397164	GLI3	ENST00000481647.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000470924.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr19_-_38746979_38747050	0.39688	GLI3	ENST00000591291.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr1_+_15802594_15802601	0.394714	GLI3	ENST00000375910.3|CELA2B|ENSG00000215704.5|chymotrypsin-like elastase family, member 2B
hg19_v2_chr20_+_62185491_62185539	0.394658	GLI3	ENST00000370097.1|C20orf195|ENSG00000125531.5|chromosome 20 open reading frame 195
hg19_v2_chr6_+_99282570_99282591	0.394555	GLI3	ENST00000328345.5|POU3F2|ENSG00000184486.7|POU class 3 homeobox 2
hg19_v2_chr19_+_52873166_52873208	0.39352	GLI3	ENST00000424032.2|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000600321.1|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000344085.5|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000597976.1|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000422689.2|ZNF880|ENSG00000221923.4|zinc finger protein 880
hg19_v2_chr20_-_22565101_22565223	0.390527	GLI3	ENST00000419308.2|FOXA2|ENSG00000125798.10|forkhead box A2
hg19_v2_chr9_+_132962843_132962872	0.389873	GLI3	ENST00000458469.1|NCS1|ENSG00000107130.6|neuronal calcium sensor 1
hg19_v2_chr22_+_25003626_25003645	0.389229	GLI3	ENST00000451366.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000406383.2|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000428855.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr6_+_43968306_43968377	0.388326	GLI3	ENST00000442114.2|C6orf223|ENSG00000181577.11|chromosome 6 open reading frame 223 	ENST00000336600.5|C6orf223|ENSG00000181577.11|chromosome 6 open reading frame 223 	ENST00000439969.2|C6orf223|ENSG00000181577.11|chromosome 6 open reading frame 223
hg19_v2_chr11_+_122709200_122709215	0.387499	GLI3	ENST00000227348.4|CRTAM|ENSG00000109943.4|cytotoxic and regulatory T cell molecule
hg19_v2_chr16_-_2059748_2059777	0.387298	GLI3	ENST00000562103.1|ZNF598|ENSG00000167962.8|zinc finger protein 598 	ENST00000431526.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr9_+_112542591_112542769	0.385098	GLI3	ENST00000483909.1|PALM2|ENSG00000243444.3|paralemmin 2 	ENST00000314527.4|PALM2|ENSG00000243444.3|paralemmin 2 	ENST00000413420.1|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough 	ENST00000302798.7|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough 	ENST00000555236.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000510514.5|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr12_-_57410304_57410325	0.385014	GLI3	ENST00000441881.1|TAC3|ENSG00000166863.7|tachykinin 3 	ENST00000458521.2|TAC3|ENSG00000166863.7|tachykinin 3
hg19_v2_chr10_-_97050777_97050806	0.384457	GLI3	ENST00000329399.6|PDLIM1|ENSG00000107438.4|PDZ and LIM domain 1
hg19_v2_chr14_+_31046959_31046972	0.384354	GLI3	ENST00000547532.1|G2E3|ENSG00000092140.10|G2/M-phase specific E3 ubiquitin protein ligase 	ENST00000555429.1|G2E3|ENSG00000092140.10|G2/M-phase specific E3 ubiquitin protein ligase
hg19_v2_chr1_+_20617362_20617412	0.383475	GLI3	ENST00000375079.2|VWA5B1|ENSG00000158816.11|von Willebrand factor A domain containing 5B1 	ENST00000289815.8|VWA5B1|ENSG00000158816.11|von Willebrand factor A domain containing 5B1 	ENST00000375083.4|VWA5B1|ENSG00000158816.11|von Willebrand factor A domain containing 5B1 	ENST00000289825.4|VWA5B1|ENSG00000158816.11|von Willebrand factor A domain containing 5B1
hg19_v2_chr15_-_74659978_74660081	0.382899	GLI3	ENST00000541301.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000416978.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000268053.6|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1
hg19_v2_chr7_+_135347215_135347296	0.382348	GLI3	ENST00000507606.1|C7orf73|ENSG00000243317.3|chromosome 7 open reading frame 73
hg19_v2_chr11_-_104817919_104817919	0.381801	GLI3	ENST00000533252.1|CASP4|ENSG00000196954.8|caspase 4, apoptosis-related cysteine peptidase
hg19_v2_chr11_+_18477369_18477431	0.380551	GLI3	ENST00000396213.3|LDHAL6A|ENSG00000166800.5|lactate dehydrogenase A-like 6A 	ENST00000280706.2|LDHAL6A|ENSG00000166800.5|lactate dehydrogenase A-like 6A
hg19_v2_chr11_+_63273811_63273835	0.37806	GLI3	ENST00000340246.5|LGALS12|ENSG00000133317.10|lectin, galactoside-binding, soluble, 12
hg19_v2_chr7_-_767249_767307	0.375206	GLI3	ENST00000403562.1|PRKAR1B|ENSG00000188191.10|protein kinase, cAMP-dependent, regulatory, type I, beta
hg19_v2_chr1_-_161014731_161014788	0.375065	GLI3	ENST00000368020.1|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr17_-_79827808_79827882	0.374937	GLI3	ENST00000580685.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha
hg19_v2_chr19_-_41196458_41196490	0.373435	GLI3	ENST00000598779.1|NUMBL|ENSG00000105245.5|numb homolog (Drosophila)-like
hg19_v2_chr2_-_71017775_71017775	0.372733	GLI3	ENST00000332372.6|FIGLA|ENSG00000183733.6|folliculogenesis specific basic helix-loop-helix
hg19_v2_chr19_-_12941469_12941498	0.371869	GLI3	ENST00000586969.1|RTBDN|ENSG00000132026.9|retbindin 	ENST00000589681.1|RTBDN|ENSG00000132026.9|retbindin 	ENST00000585384.1|RTBDN|ENSG00000132026.9|retbindin 	ENST00000589808.1|RTBDN|ENSG00000132026.9|retbindin
hg19_v2_chr8_+_94929168_94929235	0.371796	GLI3	ENST00000518107.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1 	ENST00000396200.3|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr20_+_61147651_61147666	0.371132	GLI3	ENST00000370527.3|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166 	ENST00000370524.2|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166
hg19_v2_chr16_+_68678739_68678833	0.370539	GLI3	ENST00000264012.4|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr10_-_105212141_105212183	0.36992	GLI3	ENST00000369788.3|CALHM2|ENSG00000138172.6|calcium homeostasis modulator 2
hg19_v2_chrX_+_15525426_15525441	0.369404	GLI3	ENST00000342014.6|BMX|ENSG00000102010.10|BMX non-receptor tyrosine kinase
hg19_v2_chr17_-_7018128_7018150	0.369151	GLI3	ENST00000380952.2|ASGR2|ENSG00000161944.12|asialoglycoprotein receptor 2 	ENST00000254850.7|ASGR2|ENSG00000161944.12|asialoglycoprotein receptor 2
hg19_v2_chr5_-_44388899_44388918	0.368511	GLI3	ENST00000264664.4|FGF10|ENSG00000070193.4|fibroblast growth factor 10
hg19_v2_chr6_-_35480640_35480653	0.368228	GLI3	ENST00000428978.1|TULP1|ENSG00000112041.8|tubby like protein 1 	ENST00000322263.4|TULP1|ENSG00000112041.8|tubby like protein 1
hg19_v2_chr8_+_94929077_94929106	0.368215	GLI3	ENST00000297598.4|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1 	ENST00000520614.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr2_+_178257372_178257523	0.365451	GLI3	ENST00000264167.4|AGPS|ENSG00000018510.8|alkylglycerone phosphate synthase 	ENST00000409888.1|AGPS|ENSG00000018510.8|alkylglycerone phosphate synthase
hg19_v2_chr3_+_187871060_187871102	0.365021	GLI3	ENST00000448637.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr11_+_118477144_118477156	0.364045	GLI3	ENST00000361417.2|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr9_+_72658490_72658502	0.363751	GLI3	ENST00000377182.4|MAMDC2|ENSG00000165072.9|MAM domain containing 2
hg19_v2_chr19_-_13947099_13947104	0.36364	GLI3	ENST00000587762.1|MIR24-2|ENSG00000267519.2|microRNA 24-2
hg19_v2_chr10_-_27444143_27444195	0.36193	GLI3	ENST00000477432.1|YME1L1|ENSG00000136758.14|YME1-like 1 ATPase
hg19_v2_chr10_-_103599591_103599635	0.35905	GLI3	ENST00000348850.5|KCNIP2|ENSG00000120049.14|Kv channel interacting protein 2
hg19_v2_chr19_-_19281054_19281098	0.358966	GLI3	ENST00000424583.2|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000410050.1|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000409224.1|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000409447.2|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B
hg19_v2_chr11_+_114168085_114168222	0.358661	GLI3	ENST00000541754.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr22_+_38201114_38201214	0.358535	GLI3	ENST00000340857.2|H1F0|ENSG00000189060.4|H1 histone family, member 0
hg19_v2_chr1_-_243418344_243418356	0.357159	GLI3	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr10_-_46970474_46970515	0.356916	GLI3	ENST00000503753.1|SYT15|ENSG00000204176.9|synaptotagmin XV 	ENST00000374321.4|SYT15|ENSG00000204176.9|synaptotagmin XV
hg19_v2_chr5_+_167956121_167956121	0.356537	GLI3	ENST00000338333.4|FBLL1|ENSG00000188573.7|fibrillarin-like 1
hg19_v2_chr6_-_17987694_17987913	0.356258	GLI3	ENST00000378814.5|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000378843.2|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000378826.2|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000378816.5|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000259711.6|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000502704.1|KIF13A|ENSG00000137177.14|kinesin family member 13A
hg19_v2_chr16_+_84682108_84682218	0.352455	GLI3	ENST00000564996.1|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000258157.5|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000567410.1|KLHL36|ENSG00000135686.8|kelch-like family member 36
hg19_v2_chrX_+_55246771_55246793	0.350801	GLI3	ENST00000289619.5|PAGE5|ENSG00000158639.7|P antigen family, member 5 (prostate associated) 	ENST00000374955.3|PAGE5|ENSG00000158639.7|P antigen family, member 5 (prostate associated)
hg19_v2_chr15_-_43212996_43213013	0.350798	GLI3	ENST00000567840.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2
hg19_v2_chr10_+_115312766_115312786	0.349677	GLI3	ENST00000351270.3|HABP2|ENSG00000148702.10|hyaluronan binding protein 2
hg19_v2_chr1_+_25071848_25071944	0.349013	GLI3	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr12_+_123464607_123464873	0.348713	GLI3	ENST00000543566.1|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000315580.5|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000542099.1|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000392435.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000413381.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000426960.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000453766.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4
hg19_v2_chr14_+_71374433_71374456	0.348171	GLI3	ENST00000439984.3|PCNX|ENSG00000100731.11|pecanex homolog (Drosophila)
hg19_v2_chr10_+_127408110_127408145	0.347995	GLI3	ENST00000356792.4|C10orf137|ENSG00000107938.13|erythroid differentiation regulatory factor 1
hg19_v2_chrX_+_46940254_46940264	0.347413	GLI3	ENST00000336169.3|RGN|ENSG00000130988.8|regucalcin
hg19_v2_chr11_-_535515_535592	0.347088	GLI3	ENST00000311189.7|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog 	ENST00000451590.1|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog 	ENST00000417302.1|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog
hg19_v2_chr19_-_12886327_12886434	0.346472	GLI3	ENST00000397668.3|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000587178.1|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000264827.5|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2
hg19_v2_chr3_-_10334585_10334601	0.345514	GLI3	ENST00000430179.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000449238.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000437422.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000287656.7|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000457360.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000439975.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000446937.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide
hg19_v2_chr20_-_39946237_39946356	0.344905	GLI3	ENST00000441102.2|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000559234.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3
hg19_v2_chr14_-_60097524_60097538	0.344855	GLI3	ENST00000342503.4|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr1_+_180897269_180897295	0.344624	GLI3	ENST00000367587.1|KIAA1614|ENSG00000135835.6|KIAA1614
hg19_v2_chr9_-_139927462_139927508	0.344184	GLI3	ENST00000314412.6|FUT7|ENSG00000180549.7|fucosyltransferase 7 (alpha (1,3) fucosyltransferase)
hg19_v2_chr1_+_231376941_231376976	0.343835	GLI3	ENST00000436239.1|GNPAT|ENSG00000116906.7|glyceronephosphate O-acyltransferase 	ENST00000366647.4|GNPAT|ENSG00000116906.7|glyceronephosphate O-acyltransferase 	ENST00000366646.3|GNPAT|ENSG00000116906.7|glyceronephosphate O-acyltransferase 	ENST00000416000.1|GNPAT|ENSG00000116906.7|glyceronephosphate O-acyltransferase
hg19_v2_chr3_-_38178527_38178632	0.343592	GLI3	ENST00000544624.1|ACAA1|ENSG00000060971.13|acetyl-CoA acyltransferase 1 	ENST00000444607.2|ACAA1|ENSG00000060971.13|acetyl-CoA acyltransferase 1 	ENST00000450296.1|ACAA1|ENSG00000060971.13|acetyl-CoA acyltransferase 1
hg19_v2_chr19_-_59070239_59070359	0.343125	GLI3	ENST00000595957.1|UBE2M|ENSG00000130725.3|ubiquitin-conjugating enzyme E2M 	ENST00000253023.3|UBE2M|ENSG00000130725.3|ubiquitin-conjugating enzyme E2M
hg19_v2_chr12_+_12509990_12510042	0.342197	GLI3	ENST00000542728.1|LOH12CR1|ENSG00000165714.6|loss of heterozygosity, 12, chromosomal region 1
hg19_v2_chr3_-_52273098_52273276	0.342123	GLI3	ENST00000499914.2|TWF2|ENSG00000247596.4|twinfilin actin-binding protein 2 	ENST00000597542.1|TLR9|ENSG00000239732.2|toll-like receptor 9 	ENST00000305533.5|TWF2|ENSG00000247596.4|twinfilin actin-binding protein 2
hg19_v2_chr12_-_132690337_132690347	0.34117	GLI3	ENST00000541995.1|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) 	ENST00000542942.1|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)
hg19_v2_chr18_-_46987000_46987172	0.341143	GLI3	ENST00000442713.2|DYM|ENSG00000141627.9|dymeclin 	ENST00000269445.6|DYM|ENSG00000141627.9|dymeclin
hg19_v2_chr4_-_74847800_74847841	0.340731	GLI3	ENST00000296029.3|PF4|ENSG00000163737.3|platelet factor 4
hg19_v2_chr5_-_180237445_180237462	0.339848	GLI3	ENST00000393340.3|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr19_+_4969116_4969143	0.339179	GLI3	ENST00000588337.1|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B 	ENST00000159111.4|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B 	ENST00000381759.4|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B
hg19_v2_chr15_-_101084547_101084618	0.336805	GLI3	ENST00000394113.1|CERS3|ENSG00000154227.9|ceramide synthase 3
hg19_v2_chr16_+_28834303_28834467	0.336436	GLI3	ENST00000340394.8|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000325215.6|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000395547.2|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000336783.4|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000382686.4|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000564304.1|ATXN2L|ENSG00000168488.14|ataxin 2-like
hg19_v2_chr16_-_2260834_2260906	0.33591	GLI3	ENST00000562360.1|BRICD5|ENSG00000182685.3|BRICHOS domain containing 5 	ENST00000566018.1|BRICD5|ENSG00000182685.3|BRICHOS domain containing 5
hg19_v2_chr9_-_35958151_35958151	0.335528	GLI3	ENST00000341959.2|OR2S2|ENSG00000122718.4|olfactory receptor, family 2, subfamily S, member 2
hg19_v2_chr3_+_4535155_4535234	0.334771	GLI3	ENST00000544951.1|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1
hg19_v2_chr15_+_82722225_82722225	0.334582	GLI3	ENST00000300515.8|GOLGA6L9|ENSG00000197978.8|golgin A6 family-like 9
hg19_v2_chr11_-_65640198_65640281	0.333375	GLI3	ENST00000528176.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr10_+_30722866_30722969	0.333182	GLI3	ENST00000263056.1|MAP3K8|ENSG00000107968.5|mitogen-activated protein kinase kinase kinase 8
hg19_v2_chr1_+_179561011_179561029	0.33296	GLI3	ENST00000294848.8|TDRD5|ENSG00000162782.11|tudor domain containing 5 	ENST00000444136.1|TDRD5|ENSG00000162782.11|tudor domain containing 5
hg19_v2_chr19_+_58978463_58978476	0.330691	GLI3	ENST00000196482.3|ZNF324|ENSG00000083812.7|zinc finger protein 324
hg19_v2_chr4_-_90758227_90758379	0.330046	GLI3	ENST00000506691.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394986.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000506244.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394989.2|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394991.3|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr6_-_163834852_163834992	0.328963	GLI3	ENST00000604200.1|CAHM|ENSG00000270419.1|colon adenocarcinoma hypermethylated (non-protein coding)
hg19_v2_chr1_-_21978312_21978363	0.328849	GLI3	ENST00000359708.4|RAP1GAP|ENSG00000076864.15|RAP1 GTPase activating protein 	ENST00000290101.4|RAP1GAP|ENSG00000076864.15|RAP1 GTPase activating protein
hg19_v2_chr15_+_83098710_83098710	0.327568	GLI3	ENST00000561062.1|GOLGA6L9|ENSG00000196648.6|golgin A6 family-like 20 	ENST00000358583.3|GOLGA6L9|ENSG00000196648.6|golgin A6 family-like 20
hg19_v2_chr14_-_106322288_106322325	0.327209	GLI3	ENST00000390559.2|IGHM|ENSG00000211899.3|immunoglobulin heavy constant mu
hg19_v2_chr1_-_9132311_9132325	0.32716	GLI3	ENST00000474145.1|SLC2A5|ENSG00000142583.13|solute carrier family 2 (facilitated glucose/fructose transporter), member 5
hg19_v2_chr12_-_57030115_57030177	0.32542	GLI3	ENST00000379441.3|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000179765.5|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000551812.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr5_+_52083730_52083821	0.324871	GLI3	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr5_+_73980965_73980976	0.323344	GLI3	ENST00000261416.7|HEXB|ENSG00000049860.9|hexosaminidase B (beta polypeptide)
hg19_v2_chr1_+_228337553_228337602	0.322928	GLI3	ENST00000366714.2|GJC2|ENSG00000198835.3|gap junction protein, gamma 2, 47kDa
hg19_v2_chr7_+_44084262_44084332	0.321919	GLI3	ENST00000456905.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000440166.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000452943.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000468694.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000494774.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000490734.2|DBNL|ENSG00000136279.14|drebrin-like
hg19_v2_chr3_-_127542021_127542050	0.320907	GLI3	ENST00000434178.2|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr3_+_129262057_129262057	0.320045	GLI3	ENST00000324382.2|H1FOO|ENSG00000178804.3|H1 histone family, member O, oocyte-specific
hg19_v2_chr11_+_34073872_34073895	0.31982	GLI3	ENST00000530820.1|CAPRIN1|ENSG00000135387.15|cell cycle associated protein 1
hg19_v2_chr13_+_46039037_46039126	0.318767	GLI3	ENST00000349995.5|COG3|ENSG00000136152.10|component of oligomeric golgi complex 3
hg19_v2_chr16_+_86612112_86612123	0.318657	GLI3	ENST00000320241.3|FOXL1|ENSG00000176678.4|forkhead box L1
hg19_v2_chr13_-_20437772_20437802	0.318266	GLI3	ENST00000337963.4|ZMYM5|ENSG00000132950.14|zinc finger, MYM-type 5
hg19_v2_chr5_-_156569850_156569893	0.317926	GLI3	ENST00000524219.1|HAVCR2|ENSG00000135077.4|hepatitis A virus cellular receptor 2
hg19_v2_chr3_-_10334617_10334637	0.317688	GLI3	ENST00000429122.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000425479.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000335542.8|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide
hg19_v2_chr13_+_44947941_44947996	0.317565	GLI3	ENST00000379179.3|SERP2|ENSG00000151778.6|stress-associated endoplasmic reticulum protein family member 2
hg19_v2_chr3_-_150421728_150421746	0.317286	GLI3	ENST00000295910.6|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A 	ENST00000491361.1|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A
hg19_v2_chr9_+_139247484_139247509	0.315675	GLI3	ENST00000429455.1|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1
hg19_v2_chr11_+_65029421_65029459	0.314287	GLI3	ENST00000541089.1|POLA2|ENSG00000014138.4|polymerase (DNA directed), alpha 2, accessory subunit
hg19_v2_chr15_-_74421477_74421619	0.31329	GLI3	ENST00000514871.1|RP11-247C2.2|ENSG00000248540.2|HCG2004779; Uncharacterized protein
hg19_v2_chrX_-_48216101_48216142	0.31297	GLI3	ENST00000298396.2|SSX3|ENSG00000165584.11|synovial sarcoma, X breakpoint 3 	ENST00000376893.3|SSX3|ENSG00000165584.11|synovial sarcoma, X breakpoint 3
hg19_v2_chr8_-_119634141_119634234	0.3124	GLI3	ENST00000409003.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526328.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000314727.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526765.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12
hg19_v2_chr19_-_16008880_16008930	0.312327	GLI3	ENST00000011989.7|CYP4F2|ENSG00000186115.8|cytochrome P450, family 4, subfamily F, polypeptide 2 	ENST00000221700.6|CYP4F2|ENSG00000186115.8|cytochrome P450, family 4, subfamily F, polypeptide 2
hg19_v2_chr3_-_176915215_176915281	0.312285	GLI3	ENST00000457928.2|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000422442.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr14_+_50291993_50291993	0.312119	GLI3	ENST00000595378.1|AL627171.2|ENSG00000269832.1|HCG1786899; PRO2610; Uncharacterized protein
hg19_v2_chr17_+_30594823_30594823	0.311979	GLI3	ENST00000536287.1|RHBDL3|ENSG00000141314.8|rhomboid, veinlet-like 3 (Drosophila)
hg19_v2_chr10_+_114206956_114207040	0.311976	GLI3	ENST00000432306.1|VTI1A|ENSG00000151532.9|vesicle transport through interaction with t-SNAREs 1A 	ENST00000393077.2|VTI1A|ENSG00000151532.9|vesicle transport through interaction with t-SNAREs 1A
hg19_v2_chrX_-_49460578_49460597	0.311407	GLI3	ENST00000376150.3|PAGE1|ENSG00000068985.4|P antigen family, member 1 (prostate associated)
hg19_v2_chr6_-_41747595_41747652	0.3113	GLI3	ENST00000373018.3|FRS3|ENSG00000137218.6|fibroblast growth factor receptor substrate 3
hg19_v2_chr9_-_98079965_98080008	0.311142	GLI3	ENST00000289081.3|FANCC|ENSG00000158169.7|Fanconi anemia, complementation group C
hg19_v2_chr6_-_25832254_25832287	0.310694	GLI3	ENST00000476801.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000244527.4|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000427328.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr11_+_13690200_13690244	0.309621	GLI3	ENST00000354817.3|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr1_+_11866207_11866268	0.309392	GLI3	ENST00000312413.6|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000346436.6|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6
hg19_v2_chr14_-_107211459_107211478	0.308984	GLI3	ENST00000390636.2|IGHV3-73|ENSG00000211976.2|immunoglobulin heavy variable 3-73
hg19_v2_chr10_+_50887683_50887735	0.308156	GLI3	ENST00000374113.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000374111.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000374112.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000535836.1|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53
hg19_v2_chr19_-_42573650_42573726	0.306477	GLI3	ENST00000593562.1|GRIK5|ENSG00000105737.5|glutamate receptor, ionotropic, kainate 5
hg19_v2_chr11_-_19082216_19082228	0.304399	GLI3	ENST00000329773.2|MRGPRX2|ENSG00000183695.2|MAS-related GPR, member X2
hg19_v2_chr9_-_27529726_27529827	0.30436	GLI3	ENST00000262244.5|MOB3B|ENSG00000120162.9|MOB kinase activator 3B
hg19_v2_chr14_+_104095514_104095634	0.3041	GLI3	ENST00000348520.6|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000380038.3|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000389744.4|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000557575.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000553286.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000347839.6|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000555836.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000334553.6|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000246489.7|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000557450.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000452929.2|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000554280.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000445352.4|KLC1|ENSG00000126214.16|kinesin light chain 1
hg19_v2_chr1_-_11866034_11866115	0.302198	GLI3	ENST00000376590.3|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr19_+_39904168_39904468	0.301581	GLI3	ENST00000438123.1|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000409797.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000451354.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
hg19_v2_chr20_+_48599506_48599536	0.301158	GLI3	ENST00000244050.2|SNAI1|ENSG00000124216.3|snail family zinc finger 1
hg19_v2_chr3_+_128997798_128997851	0.300561	GLI3	ENST00000502878.2|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000389735.3|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000509551.1|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000511665.1|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific
hg19_v2_chr15_-_31453157_31453308	0.300337	GLI3	ENST00000559177.1|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1 	ENST00000558445.1|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1
hg19_v2_chr1_+_232940643_232940643	0.299917	GLI3	ENST00000418460.1|MAP10|ENSG00000212916.3|microtubule-associated protein 10
hg19_v2_chr1_+_233463507_233463520	0.299505	GLI3	ENST00000366623.3|MLK4|ENSG00000143674.6|Mitogen-activated protein kinase kinase kinase MLK4  	ENST00000366624.3|MLK4|ENSG00000143674.6|Mitogen-activated protein kinase kinase kinase MLK4
hg19_v2_chr11_+_111783450_111783475	0.299117	GLI3	ENST00000537382.1|HSPB2|ENSG00000170276.4|Homo sapiens heat shock 27kDa protein 2 (HSPB2), mRNA.
hg19_v2_chr1_+_167691185_167691188	0.299039	GLI3	ENST00000359523.2|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr19_+_16338416_16338504	0.298866	GLI3	ENST00000586543.1|AP1M1|ENSG00000072958.4|adaptor-related protein complex 1, mu 1 subunit
hg19_v2_chr9_+_109694914_109694927	0.297771	GLI3	ENST00000542028.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chrX_+_30233668_30233698	0.296957	GLI3	ENST00000378988.4|MAGEB2|ENSG00000099399.5|melanoma antigen family B, 2
hg19_v2_chr19_-_14064114_14064204	0.295475	GLI3	ENST00000585607.1|PODNL1|ENSG00000132000.7|podocan-like 1 	ENST00000538517.2|PODNL1|ENSG00000132000.7|podocan-like 1 	ENST00000587458.1|PODNL1|ENSG00000132000.7|podocan-like 1 	ENST00000538371.2|PODNL1|ENSG00000132000.7|podocan-like 1
hg19_v2_chr6_+_31674639_31674681	0.295001	GLI3	ENST00000556581.1|LY6G6F|ENSG00000204424.8|lymphocyte antigen 6 complex, locus G6F 	ENST00000375832.4|LY6G6F|ENSG00000204424.8|lymphocyte antigen 6 complex, locus G6F 	ENST00000503322.1|MEGT1|ENSG00000250641.1|HCG43720, isoform CRA_a; Lymphocyte antigen 6 complex locus protein G6f; Megakaryocyte-enhanced gene transcript 1 protein; Uncharacterized protein
hg19_v2_chr5_-_180668605_180668649	0.293804	GLI3	ENST00000504128.1|GNB2L1|ENSG00000204628.7|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
hg19_v2_chr22_+_46481861_46481895	0.293093	GLI3	ENST00000360737.3|FLJ27365|ENSG00000197182.8|hsa-mir-4763
hg19_v2_chr1_-_1310530_1310603	0.293057	GLI3	ENST00000338370.3|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1 	ENST00000321751.5|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1 	ENST00000378853.3|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1
hg19_v2_chrX_-_64196376_64196413	0.292611	GLI3	ENST00000447788.2|ZC4H2|ENSG00000126970.11|zinc finger, C4H2 domain containing
hg19_v2_chr16_+_56691838_56691862	0.290853	GLI3	ENST00000394501.2|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr7_+_156931889_156931970	0.290565	GLI3	ENST00000389103.4|UBE3C|ENSG00000009335.13|ubiquitin protein ligase E3C
hg19_v2_chr20_+_42143136_42143166	0.290145	GLI3	ENST00000373134.1|L3MBTL1|ENSG00000185513.10|l(3)mbt-like 1 (Drosophila)
hg19_v2_chr17_-_4090402_4090406	0.290127	GLI3	ENST00000574736.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1
hg19_v2_chr20_-_23731893_23731920	0.290015	GLI3	ENST00000398402.1|CST1|ENSG00000170373.4|cystatin SN
hg19_v2_chr6_-_35480705_35480718	0.288966	GLI3	ENST00000229771.6|TULP1|ENSG00000112041.8|tubby like protein 1
hg19_v2_chr17_-_7137857_7137869	0.288147	GLI3	ENST00000005340.5|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr8_-_57906362_57906452	0.288042	GLI3	ENST00000262644.4|IMPAD1|ENSG00000104331.4|inositol monophosphatase domain containing 1
hg19_v2_chrX_+_51927919_51927991	0.287202	GLI3	ENST00000416960.1|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr21_+_45725050_45725211	0.286801	GLI3	ENST00000403390.1|PFKL|ENSG00000141959.12|phosphofructokinase, liver
hg19_v2_chr10_-_25012115_25012174	0.286098	GLI3	ENST00000446003.1|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr6_+_26204825_26204858	0.285707	GLI3	ENST00000360441.4|HIST1H4E|ENSG00000198518.5|histone cluster 1, H4e
hg19_v2_chr12_-_82152444_82152475	0.285557	GLI3	ENST00000549325.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000550584.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr17_-_27139411_27139498	0.285237	GLI3	ENST00000452648.3|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B
hg19_v2_chr16_-_75285380_75285580	0.284677	GLI3	ENST00000393420.6|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000162330.5|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr2_+_131975882_131975924	0.284668	GLI3	ENST00000356920.5|POTEE|ENSG00000188219.10|POTE ankyrin domain family, member E 	ENST00000358087.5|POTEE|ENSG00000188219.10|POTE ankyrin domain family, member E
hg19_v2_chr20_+_62666902_62667016	0.284056	GLI3	ENST00000431158.1|LINC00176|ENSG00000196421.3|long intergenic non-protein coding RNA 176
hg19_v2_chr22_+_38349670_38349723	0.283182	GLI3	ENST00000442738.2|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000460648.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000407936.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000488684.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000492213.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000606538.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000405557.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F
hg19_v2_chr9_-_34620440_34620515	0.283146	GLI3	ENST00000421919.1|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378911.3|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000477738.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000341694.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000259632.7|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378913.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378916.4|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000447983.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22)
hg19_v2_chr14_+_96342729_96342790	0.283035	GLI3	ENST00000504119.1|LINC00617|ENSG00000250366.2|long intergenic non-protein coding RNA 617
hg19_v2_chr4_-_89080003_89080075	0.282889	GLI3	ENST00000237612.3|ABCG2|ENSG00000118777.6|ATP-binding cassette, sub-family G (WHITE), member 2
hg19_v2_chr21_-_31311818_31312013	0.282808	GLI3	ENST00000535441.1|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000309434.7|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000327783.4|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000389124.2|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000389125.3|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000399913.1|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1
hg19_v2_chr5_+_140566_140681	0.282062	GLI3	ENST00000502646.1|PLEKHG4B|ENSG00000153404.9|pleckstrin homology domain containing, family G (with RhoGef domain) member 4B
hg19_v2_chr4_+_3388057_3388075	0.282046	GLI3	ENST00000538395.1|RGS12|ENSG00000159788.14|regulator of G-protein signaling 12
hg19_v2_chr17_+_40118805_40118900	0.28068	GLI3	ENST00000591072.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000587679.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000393888.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000441615.2|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr19_-_16284286_16284336	0.280389	GLI3	ENST00000379859.3|CIB3|ENSG00000141977.5|calcium and integrin binding family member 3 	ENST00000269878.4|CIB3|ENSG00000141977.5|calcium and integrin binding family member 3
hg19_v2_chrX_-_64196307_64196338	0.279919	GLI3	ENST00000545618.1|ZC4H2|ENSG00000126970.11|zinc finger, C4H2 domain containing
hg19_v2_chr11_-_89541743_89541743	0.279766	GLI3	ENST00000329758.1|TRIM49|ENSG00000168930.9|tripartite motif containing 49
hg19_v2_chr17_-_15522826_15522826	0.277957	GLI3	ENST00000395906.3|CDRT1|ENSG00000241322.4|CMT1A duplicated region transcript 1
hg19_v2_chr17_-_72919317_72919368	0.277814	GLI3	ENST00000319642.1|USH1G|ENSG00000182040.4|Usher syndrome 1G (autosomal recessive)
hg19_v2_chr11_+_68451943_68451986	0.277598	GLI3	ENST00000265643.3|GAL|ENSG00000069482.6|galanin/GMAP prepropeptide
hg19_v2_chr9_+_97021572_97021615	0.276371	GLI3	ENST00000395395.2|ZNF169|ENSG00000175787.12|zinc finger protein 169 	ENST00000340911.4|ZNF169|ENSG00000175787.12|zinc finger protein 169
hg19_v2_chr19_+_46195895_46195959	0.276125	GLI3	ENST00000366382.4|QPCTL|ENSG00000011478.7|glutaminyl-peptide cyclotransferase-like
hg19_v2_chr20_-_61885826_61885892	0.275996	GLI3	ENST00000370316.3|NKAIN4|ENSG00000101198.10|Na+/K+ transporting ATPase interacting 4
hg19_v2_chr2_-_68694390_68694434	0.275973	GLI3	ENST00000377957.3|FBXO48|ENSG00000204923.3|F-box protein 48
hg19_v2_chr3_-_10332416_10332446	0.275212	GLI3	ENST00000450603.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000449554.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide
hg19_v2_chr8_-_67525473_67525518	0.27393	GLI3	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr7_+_38217920_38218003	0.273721	GLI3	ENST00000396013.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000440144.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000453225.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000429075.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like
hg19_v2_chrX_-_8769378_8769424	0.273435	GLI3	ENST00000543214.1|FAM9A|ENSG00000183304.6|family with sequence similarity 9, member A 	ENST00000381003.3|FAM9A|ENSG00000183304.6|family with sequence similarity 9, member A
hg19_v2_chr8_-_33457453_33457624	0.273286	GLI3	ENST00000523956.1|DUSP26|ENSG00000133878.4|dual specificity phosphatase 26 (putative) 	ENST00000256261.4|DUSP26|ENSG00000133878.4|dual specificity phosphatase 26 (putative)
hg19_v2_chr6_+_125540951_125540991	0.272435	GLI3	ENST00000524679.1|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr6_-_3752222_3752260	0.271109	GLI3	ENST00000380283.4|PXDC1|ENSG00000168994.9|PX domain containing 1
hg19_v2_chr2_+_220283091_220283108	0.27073	GLI3	ENST00000373960.3|DES|ENSG00000175084.7|desmin
hg19_v2_chr16_-_75300679_75300808	0.270632	GLI3	ENST00000420641.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr3_-_108476231_108476257	0.269404	GLI3	ENST00000295755.6|RETNLB|ENSG00000163515.6|resistin like beta
hg19_v2_chr12_-_4554780_4554780	0.26862	GLI3	ENST00000228837.2|FGF6|ENSG00000111241.2|fibroblast growth factor 6
hg19_v2_chr3_+_15468862_15468909	0.268462	GLI3	ENST00000396842.2|EAF1|ENSG00000144597.9|ELL associated factor 1
hg19_v2_chrX_-_70329118_70329194	0.268042	GLI3	ENST00000374188.3|IL2RG|ENSG00000147168.8|interleukin 2 receptor, gamma
hg19_v2_chr4_-_96470350_96470373	0.268001	GLI3	ENST00000504962.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans) 	ENST00000453304.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans) 	ENST00000506749.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans)
hg19_v2_chr12_-_57940904_57941002	0.267805	GLI3	ENST00000550954.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000434715.3|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000546670.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000543672.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50)
hg19_v2_chr7_+_150688166_150688192	0.267505	GLI3	ENST00000461406.1|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell)
hg19_v2_chr8_-_10987745_10987745	0.266925	GLI3	ENST00000400102.3|AF131215.5|ENSG00000215346.3|AF131215.5
hg19_v2_chr17_-_17942473_17942523	0.265255	GLI3	ENST00000585101.1|ATPAF2|ENSG00000171953.11|ATP synthase mitochondrial F1 complex assembly factor 2 	ENST00000474627.3|ATPAF2|ENSG00000171953.11|ATP synthase mitochondrial F1 complex assembly factor 2 	ENST00000444058.1|ATPAF2|ENSG00000171953.11|ATP synthase mitochondrial F1 complex assembly factor 2
hg19_v2_chr17_-_7017559_7017630	0.265227	GLI3	ENST00000446679.2|ASGR2|ENSG00000161944.12|asialoglycoprotein receptor 2
hg19_v2_chr9_+_139871948_139871968	0.264958	GLI3	ENST00000224167.2|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain) 	ENST00000457950.1|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain) 	ENST00000371625.3|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain) 	ENST00000371623.3|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain)
hg19_v2_chr1_-_1243252_1243318	0.264919	GLI3	ENST00000353662.3|ACAP3|ENSG00000131584.14|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
hg19_v2_chr16_+_2097403_2097466	0.264693	GLI3	ENST00000219476.3|TSC2|ENSG00000103197.12|tuberous sclerosis 2
hg19_v2_chr19_+_40697514_40697651	0.264009	GLI3	ENST00000253055.3|MAP3K10|ENSG00000130758.3|mitogen-activated protein kinase kinase kinase 10
hg19_v2_chr5_+_150157860_150157883	0.263988	GLI3	ENST00000600109.1|AC010441.1|ENSG00000269636.1|AC010441.1
hg19_v2_chr2_+_242498135_242498136	0.262146	GLI3	ENST00000318407.3|BOK|ENSG00000176720.3|BCL2-related ovarian killer
hg19_v2_chr22_+_20008595_20008644	0.261565	GLI3	ENST00000398042.2|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila) 	ENST00000450664.1|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila) 	ENST00000327374.4|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila) 	ENST00000432883.1|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila)
hg19_v2_chr12_+_57984965_57985059	0.259695	GLI3	ENST00000540759.2|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000551772.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000550465.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000354947.5|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
hg19_v2_chr8_+_38965048_38965292	0.259631	GLI3	ENST00000399831.3|ADAM32|ENSG00000197140.10|ADAM metallopeptidase domain 32 	ENST00000437682.2|ADAM32|ENSG00000197140.10|ADAM metallopeptidase domain 32 	ENST00000519315.1|ADAM32|ENSG00000197140.10|ADAM metallopeptidase domain 32 	ENST00000379907.4|ADAM32|ENSG00000197140.10|ADAM metallopeptidase domain 32 	ENST00000522506.1|ADAM32|ENSG00000197140.10|ADAM metallopeptidase domain 32
hg19_v2_chr16_+_765092_765169	0.259281	GLI3	ENST00000568223.2|METRN|ENSG00000103260.4|meteorin, glial cell differentiation regulator
hg19_v2_chrX_-_64196351_64196372	0.259037	GLI3	ENST00000374839.3|ZC4H2|ENSG00000126970.11|zinc finger, C4H2 domain containing
hg19_v2_chr15_-_45422056_45422136	0.25858	GLI3	ENST00000267803.4|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000559014.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558851.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000559988.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558996.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558422.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000559226.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558326.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558377.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000559644.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1
hg19_v2_chr4_-_46391367_46391436	0.256939	GLI3	ENST00000503806.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000356504.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000514090.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000506961.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2
hg19_v2_chr1_-_95285764_95285837	0.256546	GLI3	ENST00000414374.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057 	ENST00000421997.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057 	ENST00000418366.2|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057 	ENST00000452922.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057
hg19_v2_chr11_-_506739_506821	0.25614	GLI3	ENST00000529306.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000438658.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000527485.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397615.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397614.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1
hg19_v2_chr10_-_105615164_105615323	0.254494	GLI3	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chr9_+_15553055_15553101	0.253868	GLI3	ENST00000380701.3|CCDC171|ENSG00000164989.11|coiled-coil domain containing 171
hg19_v2_chr2_-_85895295_85895331	0.25386	GLI3	ENST00000428225.1|SFTPB|ENSG00000168878.12|surfactant protein B 	ENST00000519937.2|SFTPB|ENSG00000168878.12|surfactant protein B
hg19_v2_chr16_+_68771128_68771255	0.253223	GLI3	ENST00000261769.5|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial) 	ENST00000422392.2|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial)
hg19_v2_chr1_-_110155671_110155685	0.252924	GLI3	ENST00000351050.3|GNAT2|ENSG00000134183.7|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2
hg19_v2_chr17_-_7137582_7137637	0.252608	GLI3	ENST00000575756.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2 	ENST00000575458.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr8_-_131028869_131028918	0.252565	GLI3	ENST00000518283.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000519110.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B
hg19_v2_chr1_+_155293702_155293729	0.251594	GLI3	ENST00000368347.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr17_-_79481666_79481785	0.250225	GLI3	ENST00000575659.1|ACTG1|ENSG00000184009.5|actin, gamma 1
hg19_v2_chr18_+_21594384_21594539	0.248966	GLI3	ENST00000584250.1|TTC39C|ENSG00000168234.8|tetratricopeptide repeat domain 39C
hg19_v2_chrX_-_11308598_11308610	0.248418	GLI3	ENST00000380717.3|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr6_-_30899924_30899954	0.247814	GLI3	ENST00000359086.3|SFTA2|ENSG00000196260.3|surfactant associated 2
hg19_v2_chr16_-_75299845_75299883	0.247681	GLI3	ENST00000535626.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr19_+_49999631_49999711	0.24738	GLI3	ENST00000270625.2|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000596873.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000594493.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000599561.1|RPS11|ENSG00000142534.2|ribosomal protein S11
hg19_v2_chr10_-_105110831_105110885	0.24736	GLI3	ENST00000337211.4|PCGF6|ENSG00000156374.10|polycomb group ring finger 6
hg19_v2_chr1_+_104615595_104615645	0.245945	GLI3	ENST00000418362.1|RP11-364B6.1|ENSG00000215869.3|RP11-364B6.1
hg19_v2_chr8_+_11141925_11141937	0.245815	GLI3	ENST00000221086.3|MTMR9|ENSG00000104643.5|myotubularin related protein 9
hg19_v2_chr1_+_28655505_28655629	0.245375	GLI3	ENST00000373842.4|MED18|ENSG00000130772.9|mediator complex subunit 18 	ENST00000398997.2|MED18|ENSG00000130772.9|mediator complex subunit 18
hg19_v2_chr22_-_21482046_21482046	0.245196	GLI3	ENST00000419447.1|POM121L7|ENSG00000239511.1|POM121 transmembrane nucleoporin-like 7
hg19_v2_chr3_-_171528227_171528298	0.244983	GLI3	ENST00000356327.5|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific 	ENST00000342215.6|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific 	ENST00000340989.4|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific 	ENST00000351298.4|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific
hg19_v2_chr19_-_54618650_54618688	0.24462	GLI3	ENST00000391757.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr19_-_59023348_59023432	0.244133	GLI3	ENST00000601355.1|SLC27A5|ENSG00000083807.5|solute carrier family 27 (fatty acid transporter), member 5 	ENST00000263093.2|SLC27A5|ENSG00000083807.5|solute carrier family 27 (fatty acid transporter), member 5
hg19_v2_chr14_-_106781017_106781017	0.243702	GLI3	ENST00000390612.2|IGHV4-28|ENSG00000211952.2|immunoglobulin heavy variable 4-28
hg19_v2_chr14_+_105047478_105047605	0.24331	GLI3	ENST00000410013.1|C14orf180|ENSG00000184601.6|chromosome 14 open reading frame 180
hg19_v2_chrX_+_48242863_48242939	0.242884	GLI3	ENST00000376886.2|SSX4|ENSG00000204645.4|synovial sarcoma, X breakpoint 4 	ENST00000375517.3|SSX4|ENSG00000204645.4|synovial sarcoma, X breakpoint 4
hg19_v2_chr17_-_43502987_43503004	0.242671	GLI3	ENST00000376922.2|ARHGAP27|ENSG00000159314.7|Rho GTPase activating protein 27
hg19_v2_chr19_+_35532612_35532676	0.242564	GLI3	ENST00000600390.1|HPN|ENSG00000105707.9|hepsin 	ENST00000597419.1|HPN|ENSG00000105707.9|hepsin
hg19_v2_chr19_-_45926739_45926863	0.242247	GLI3	ENST00000589381.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000591636.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000013807.5|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000592023.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)
hg19_v2_chr19_-_54619006_54619055	0.242084	GLI3	ENST00000391759.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr3_+_184081213_184081224	0.24139	GLI3	ENST00000429568.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr8_-_142011244_142011288	0.240548	GLI3	ENST00000340930.3|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000520828.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000524257.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000523679.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr3_-_42623428_42623520	0.240349	GLI3	ENST00000423701.2|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000420163.1|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000416880.1|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000536332.1|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000264454.3|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000273156.7|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)
hg19_v2_chr3_+_184081175_184081208	0.24027	GLI3	ENST00000452961.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H 	ENST00000296223.3|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chrX_+_23685563_23685648	0.240174	GLI3	ENST00000379341.4|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr4_+_159593271_159593295	0.240115	GLI3	ENST00000512251.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase 	ENST00000511912.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase
hg19_v2_chr16_+_56691911_56691929	0.23948	GLI3	ENST00000568475.1|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr8_+_145133493_145133551	0.238669	GLI3	ENST00000316052.5|EXOSC4|ENSG00000178896.6|exosome component 4 	ENST00000525936.1|EXOSC4|ENSG00000178896.6|exosome component 4
hg19_v2_chr11_+_576494_576521	0.238033	GLI3	ENST00000533464.1|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000413872.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000416188.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1
hg19_v2_chr2_-_242842587_242842602	0.237852	GLI3	ENST00000404031.1|AC131097.4|ENSG00000216921.3|Protein LOC285095
hg19_v2_chr1_+_36621529_36621585	0.237413	GLI3	ENST00000316156.4|MAP7D1|ENSG00000116871.11|MAP7 domain containing 1
hg19_v2_chr1_-_29508321_29508444	0.237326	GLI3	ENST00000546138.1|SRSF4|ENSG00000116350.11|serine/arginine-rich splicing factor 4
hg19_v2_chr5_+_68788594_68788656	0.236994	GLI3	ENST00000396442.2|OCLN|ENSG00000197822.6|occludin 	ENST00000380766.2|OCLN|ENSG00000197822.6|occludin
hg19_v2_chr5_-_162887054_162887067	0.236879	GLI3	ENST00000517501.1|NUDCD2|ENSG00000170584.6|NudC domain containing 2
hg19_v2_chr17_-_54991395_54991453	0.236705	GLI3	ENST00000316881.4|TRIM25|ENSG00000121060.10|tripartite motif containing 25
hg19_v2_chr11_+_64001962_64002033	0.236096	GLI3	ENST00000309422.2|VEGFB|ENSG00000173511.5|vascular endothelial growth factor B
hg19_v2_chr17_-_3375033_3375123	0.235993	GLI3	ENST00000268981.5|SPATA22|ENSG00000141255.8|spermatogenesis associated 22 	ENST00000397168.3|SPATA22|ENSG00000141255.8|spermatogenesis associated 22 	ENST00000572969.1|SPATA22|ENSG00000141255.8|spermatogenesis associated 22 	ENST00000355380.4|SPATA22|ENSG00000141255.8|spermatogenesis associated 22 	ENST00000571553.1|SPATA22|ENSG00000141255.8|spermatogenesis associated 22 	ENST00000574797.1|SPATA22|ENSG00000141255.8|spermatogenesis associated 22 	ENST00000575375.1|SPATA22|ENSG00000141255.8|spermatogenesis associated 22
hg19_v2_chrX_+_153046456_153046571	0.235974	GLI3	ENST00000393786.3|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000370104.1|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000370108.3|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000370101.3|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000430541.1|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000370100.1|SRPK3|ENSG00000184343.6|SRSF protein kinase 3
hg19_v2_chr16_-_67517716_67517716	0.235911	GLI3	ENST00000290953.2|AGRP|ENSG00000159723.4|agouti related protein homolog (mouse)
hg19_v2_chr16_-_89043377_89043406	0.23581	GLI3	ENST00000436887.2|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000448839.1|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000360302.2|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chr12_+_69186125_69186125	0.235778	GLI3	ENST00000399333.3|AC124890.1|ENSG00000251695.2|HCG1774533, isoform CRA_a; PRO2268; Uncharacterized protein
hg19_v2_chr8_+_90914757_90914856	0.235446	GLI3	ENST00000451899.2|OSGIN2|ENSG00000164823.5|oxidative stress induced growth inhibitor family member 2
hg19_v2_chrX_+_55026763_55026831	0.235243	GLI3	ENST00000374987.3|APEX2|ENSG00000169188.4|APEX nuclease (apurinic/apyrimidinic endonuclease) 2
hg19_v2_chr10_-_49701686_49701697	0.234971	GLI3	ENST00000417247.2|ARHGAP22|ENSG00000128805.10|Rho GTPase activating protein 22
hg19_v2_chr21_+_48055527_48055608	0.234909	GLI3	ENST00000397638.2|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000458387.2|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000451211.2|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000291705.6|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000397637.1|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000334494.4|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000397628.1|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000440086.1|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2
hg19_v2_chr19_+_17186577_17186637	0.234595	GLI3	ENST00000595618.1|MYO9B|ENSG00000099331.9|myosin IXB 	ENST00000594824.1|MYO9B|ENSG00000099331.9|myosin IXB
hg19_v2_chr18_-_60987220_60987386	0.233144	GLI3	ENST00000398117.1|BCL2|ENSG00000171791.10|B-cell CLL/lymphoma 2
hg19_v2_chr8_+_6565854_6565942	0.232977	GLI3	ENST00000285518.6|AGPAT5|ENSG00000155189.7|1-acylglycerol-3-phosphate O-acyltransferase 5
hg19_v2_chrX_+_23685653_23685681	0.232359	GLI3	ENST00000379331.3|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr8_+_41386725_41386757	0.231617	GLI3	ENST00000276533.3|GINS4|ENSG00000147536.7|GINS complex subunit 4 (Sld5 homolog) 	ENST00000520710.1|GINS4|ENSG00000147536.7|GINS complex subunit 4 (Sld5 homolog) 	ENST00000518671.1|GINS4|ENSG00000147536.7|GINS complex subunit 4 (Sld5 homolog)
hg19_v2_chr11_-_64511575_64511650	0.231259	GLI3	ENST00000431822.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated) 	ENST00000377486.3|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated) 	ENST00000394432.3|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated)
hg19_v2_chr18_+_70536215_70536275	0.230855	GLI3	ENST00000578967.1|RP11-676J15.1|ENSG00000263958.1|RP11-676J15.1
hg19_v2_chr11_-_65640325_65640377	0.230813	GLI3	ENST00000307998.6|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chrX_+_49178536_49178536	0.230802	GLI3	ENST00000442437.2|GAGE12J|ENSG00000224659.2|G antigen 12J
hg19_v2_chr1_-_47082495_47082563	0.230799	GLI3	ENST00000545730.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000531769.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000319928.3|MOB3C|ENSG00000142961.10|MOB kinase activator 3C
hg19_v2_chr15_-_31453359_31453476	0.230694	GLI3	ENST00000542188.1|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1
hg19_v2_chr12_+_128751948_128751948	0.230084	GLI3	ENST00000435159.2|TMEM132C|ENSG00000181234.8|transmembrane protein 132C
hg19_v2_chr1_+_63788730_63788730	0.229883	GLI3	ENST00000371116.2|FOXD3|ENSG00000187140.4|forkhead box D3
hg19_v2_chr1_+_87170277_87170315	0.229215	GLI3	ENST00000535010.1|SH3GLB1|ENSG00000097033.10|SH3-domain GRB2-like endophilin B1
hg19_v2_chr3_-_14166316_14166383	0.228661	GLI3	ENST00000396914.3|CHCHD4|ENSG00000163528.8|coiled-coil-helix-coiled-coil-helix domain containing 4 	ENST00000295767.5|CHCHD4|ENSG00000163528.8|coiled-coil-helix-coiled-coil-helix domain containing 4
hg19_v2_chr5_+_10250328_10250362	0.227868	GLI3	ENST00000515390.1|CCT5|ENSG00000150753.7|chaperonin containing TCP1, subunit 5 (epsilon)
hg19_v2_chr11_-_111784005_111784071	0.227404	GLI3	ENST00000527899.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr15_+_40531621_40531719	0.227087	GLI3	ENST00000560346.1|PAK6|ENSG00000137843.7|p21 protein (Cdc42/Rac)-activated kinase 6
hg19_v2_chr11_-_74442430_74442481	0.225023	GLI3	ENST00000376332.3|CHRDL2|ENSG00000054938.11|chordin-like 2
hg19_v2_chr10_+_6130966_6131047	0.224541	GLI3	ENST00000437845.2|RBM17|ENSG00000134453.11|RNA binding motif protein 17 	ENST00000432931.1|RBM17|ENSG00000134453.11|RNA binding motif protein 17
hg19_v2_chr16_+_29817399_29817427	0.224512	GLI3	ENST00000545521.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor)
hg19_v2_chr12_-_132690573_132690704	0.224417	GLI3	ENST00000397325.2|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) 	ENST00000538356.1|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)
hg19_v2_chr19_-_35166604_35166604	0.224334	GLI3	ENST00000601241.1|SCGB2B2|ENSG00000205209.3|secretoglobin, family 2B, member 2
hg19_v2_chr20_+_18118703_18118767	0.223983	GLI3	ENST00000464792.1|CSRP2BP|ENSG00000149474.9|CSRP2 binding protein
hg19_v2_chr14_-_25103472_25103483	0.221478	GLI3	ENST00000216341.4|GZMB|ENSG00000100453.8|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) 	ENST00000382542.1|GZMB|ENSG00000100453.8|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) 	ENST00000382540.1|GZMB|ENSG00000100453.8|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)
hg19_v2_chr17_-_17494972_17495037	0.220963	GLI3	ENST00000435340.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000255389.5|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000395781.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase
hg19_v2_chr7_-_150884873_150884919	0.220304	GLI3	ENST00000377867.3|ASB10|ENSG00000146926.6|ankyrin repeat and SOCS box containing 10
hg19_v2_chr1_-_47407136_47407154	0.220301	GLI3	ENST00000462347.1|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11 	ENST00000371905.1|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11 	ENST00000310638.4|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11
hg19_v2_chr19_+_39989535_39989562	0.22002	GLI3	ENST00000356433.5|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr7_-_44180673_44180687	0.219666	GLI3	ENST00000457314.1|MYL7|ENSG00000106631.4|myosin, light chain 7, regulatory 	ENST00000447951.1|MYL7|ENSG00000106631.4|myosin, light chain 7, regulatory 	ENST00000431007.1|MYL7|ENSG00000106631.4|myosin, light chain 7, regulatory
hg19_v2_chr19_+_44220247_44220265	0.219191	GLI3	ENST00000596627.1|IRGC|ENSG00000124449.6|immunity-related GTPase family, cinema
hg19_v2_chr11_+_59824127_59824161	0.21877	GLI3	ENST00000278865.3|MS4A3|ENSG00000149516.9|membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific)
hg19_v2_chr15_+_89164520_89164559	0.218762	GLI3	ENST00000332810.3|AEN|ENSG00000181026.13|apoptosis enhancing nuclease
hg19_v2_chr2_+_264913_264964	0.218387	GLI3	ENST00000439645.2|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble 	ENST00000405233.1|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble
hg19_v2_chr4_+_184580420_184580485	0.218261	GLI3	ENST00000334690.6|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11 	ENST00000357207.4|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11
hg19_v2_chr1_-_19186176_19186176	0.21799	GLI3	ENST00000375371.3|TAS1R2|ENSG00000179002.5|taste receptor, type 1, member 2
hg19_v2_chr4_+_113066552_113066563	0.217013	GLI3	ENST00000309733.5|C4orf32|ENSG00000174749.5|chromosome 4 open reading frame 32
hg19_v2_chr8_-_143823816_143823832	0.216576	GLI3	ENST00000246515.1|SLURP1|ENSG00000126233.1|secreted LY6/PLAUR domain containing 1
hg19_v2_chr19_-_40324255_40324296	0.216527	GLI3	ENST00000593685.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000600611.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr1_-_31661000_31661000	0.215952	GLI3	ENST00000263693.1|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1 	ENST00000398657.2|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1 	ENST00000526106.1|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1
hg19_v2_chr2_+_264869_264906	0.21487	GLI3	ENST00000272067.6|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble 	ENST00000272065.5|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble 	ENST00000407983.3|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble
hg19_v2_chr3_+_4535025_4535040	0.21383	GLI3	ENST00000302640.8|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000354582.6|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000423119.2|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000357086.4|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000456211.2|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1
hg19_v2_chr16_+_16043406_16043434	0.212376	GLI3	ENST00000399410.3|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000399408.2|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000346370.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000351154.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000345148.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000349029.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
hg19_v2_chr3_-_39196049_39196062	0.212197	GLI3	ENST00000514182.1|CSRNP1|ENSG00000144655.10|cysteine-serine-rich nuclear protein 1
hg19_v2_chr5_+_161495038_161495056	0.212098	GLI3	ENST00000393933.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr19_-_22193706_22193721	0.210633	GLI3	ENST00000597040.1|ZNF208|ENSG00000160321.10|zinc finger protein 208
hg19_v2_chr19_+_489140_489179	0.210054	GLI3	ENST00000587541.1|MADCAM1|ENSG00000099866.10|mucosal vascular addressin cell adhesion molecule 1
hg19_v2_chr16_+_77233294_77233341	0.209259	GLI3	ENST00000378644.4|SYCE1L|ENSG00000205078.5|synaptonemal complex central element protein 1-like
hg19_v2_chr12_+_52282001_52282021	0.206634	GLI3	ENST00000340970.4|ANKRD33|ENSG00000167612.8|ankyrin repeat domain 33
hg19_v2_chr11_-_113346111_113346125	0.205738	GLI3	ENST00000362072.3|DRD2|ENSG00000149295.9|dopamine receptor D2
hg19_v2_chr19_+_55085248_55085346	0.205473	GLI3	ENST00000391738.3|LILRA2|ENSG00000239998.1|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 	ENST00000251376.3|LILRA2|ENSG00000239998.1|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 	ENST00000391737.1|LILRA2|ENSG00000239998.1|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 	ENST00000396321.2|LILRB1|ENSG00000104972.10|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 	ENST00000418536.2|LILRB1|ENSG00000104972.10|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 	ENST00000448689.1|LILRB1|ENSG00000104972.10|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1
hg19_v2_chr2_-_17935059_17935102	0.205331	GLI3	ENST00000448223.2|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000381272.4|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000351948.4|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6
hg19_v2_chrX_+_70364667_70364721	0.204793	GLI3	ENST00000536169.1|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000395855.2|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000374051.3|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000358741.3|NLGN3|ENSG00000196338.8|neuroligin 3
hg19_v2_chrX_+_52511925_52511925	0.203919	GLI3	ENST00000375588.1|XAGE1C|ENSG00000183461.12|X antigen family, member 1C
hg19_v2_chr11_+_118842417_118842477	0.203838	GLI3	ENST00000317011.3|FOXR1|ENSG00000176302.8|forkhead box R1
hg19_v2_chr11_+_120973375_120973375	0.203799	GLI3	ENST00000264037.2|TECTA|ENSG00000109927.5|tectorin alpha
hg19_v2_chr13_-_52733980_52734002	0.203561	GLI3	ENST00000339406.3|NEK3|ENSG00000136098.12|NIMA-related kinase 3
hg19_v2_chr2_+_96991935_96991957	0.203177	GLI3	ENST00000361124.4|ITPRIPL1|ENSG00000198885.5|inositol 1,4,5-trisphosphate receptor interacting protein-like 1 	ENST00000420728.1|ITPRIPL1|ENSG00000198885.5|inositol 1,4,5-trisphosphate receptor interacting protein-like 1 	ENST00000542887.1|ITPRIPL1|ENSG00000198885.5|inositol 1,4,5-trisphosphate receptor interacting protein-like 1
hg19_v2_chr14_+_22409308_22409322	0.203011	GLI3	ENST00000390441.2|TRAV9-2|ENSG00000211793.2|T cell receptor alpha variable 9-2
hg19_v2_chr19_+_39989580_39989608	0.202893	GLI3	ENST00000596614.1|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila) 	ENST00000205143.4|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr19_+_15904761_15904761	0.20279	GLI3	ENST00000308940.8|OR10H5|ENSG00000172519.8|olfactory receptor, family 10, subfamily H, member 5
hg19_v2_chr16_+_1730338_1730369	0.202562	GLI3	ENST00000566691.1|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like 	ENST00000382710.4|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like
hg19_v2_chrX_+_148863584_148863612	0.201762	GLI3	ENST00000439010.2|MAGEA9|ENSG00000166008.5|melanoma antigen family A, 9 	ENST00000298974.5|MAGEA9|ENSG00000166008.5|melanoma antigen family A, 9 	ENST00000522429.1|MAGEA9|ENSG00000166008.5|melanoma antigen family A, 9 	ENST00000519822.1|MAGEA9|ENSG00000166008.5|melanoma antigen family A, 9
hg19_v2_chr19_+_8943074_8943074	0.201705	GLI3	ENST00000595891.1|MBD3L1|ENSG00000170948.3|methyl-CpG binding domain protein 3-like 1
hg19_v2_chr11_+_64053311_64053387	0.200966	GLI3	ENST00000540370.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr1_+_35220613_35220718	0.197941	GLI3	ENST00000338513.1|GJB5|ENSG00000189280.3|gap junction protein, beta 5, 31.1kDa
hg19_v2_chr16_+_31044812_31044931	0.197379	GLI3	ENST00000313843.3|STX4|ENSG00000103496.10|syntaxin 4
hg19_v2_chr1_+_207039154_207039198	0.196734	GLI3	ENST00000367096.3|IL20|ENSG00000162891.6|interleukin 20 	ENST00000391930.2|IL20|ENSG00000162891.6|interleukin 20
hg19_v2_chr20_-_25207370_25207370	0.19575	GLI3	ENST00000593352.1|AL035252.1|ENSG00000268302.1|HCG2018895; Uncharacterized protein
hg19_v2_chrX_-_45629661_45629677	0.195587	GLI3	ENST00000602507.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2	ENST00000602461.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2
hg19_v2_chr1_-_231376836_231376865	0.194999	GLI3	ENST00000451322.1|C1orf131|ENSG00000143633.8|chromosome 1 open reading frame 131
hg19_v2_chr5_+_65892174_65892229	0.194674	GLI3	ENST00000404260.3|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000403625.2|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000406374.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr19_-_4517613_4517716	0.194563	GLI3	ENST00000301286.3|PLIN4|ENSG00000167676.3|perilipin 4
hg19_v2_chr15_+_45544426_45544451	0.194347	GLI3	ENST00000347644.3|SLC28A2|ENSG00000137860.7|solute carrier family 28 (concentrative nucleoside transporter), member 2 	ENST00000560438.1|SLC28A2|ENSG00000137860.7|solute carrier family 28 (concentrative nucleoside transporter), member 2
hg19_v2_chr14_-_102976091_102976133	0.193911	GLI3	ENST00000286918.4|ANKRD9|ENSG00000156381.4|ankyrin repeat domain 9
hg19_v2_chr1_+_207669573_207669606	0.193671	GLI3	ENST00000400960.2|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000534202.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr1_-_204380919_204380953	0.193133	GLI3	ENST00000367188.4|PPP1R15B|ENSG00000158615.8|protein phosphatase 1, regulatory subunit 15B
hg19_v2_chr12_+_122326630_122326646	0.192113	GLI3	ENST00000541212.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000340175.5|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr12_+_129028500_129028500	0.191458	GLI3	ENST00000315208.8|TMEM132C|ENSG00000181234.8|transmembrane protein 132C
hg19_v2_chr19_+_55385682_55385717	0.191307	GLI3	ENST00000391726.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for
hg19_v2_chr15_+_42566384_42566475	0.191123	GLI3	ENST00000440615.2|GANC|ENSG00000214013.5|glucosidase, alpha; neutral C 	ENST00000318010.8|GANC|ENSG00000214013.5|glucosidase, alpha; neutral C
hg19_v2_chrX_-_52683950_52683950	0.189091	GLI3	ENST00000298181.5|SSX7|ENSG00000187754.8|synovial sarcoma, X breakpoint 7
hg19_v2_chr17_-_7531121_7531198	0.188865	GLI3	ENST00000573566.1|SAT2|ENSG00000141504.7|spermidine/spermine N1-acetyltransferase family member 2 	ENST00000269298.5|SAT2|ENSG00000141504.7|spermidine/spermine N1-acetyltransferase family member 2
hg19_v2_chr2_-_145275211_145275220	0.188807	GLI3	ENST00000462355.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr2_+_85839218_85839255	0.188598	GLI3	ENST00000448971.1|USP39|ENSG00000168883.15|ubiquitin specific peptidase 39 	ENST00000442708.1|USP39|ENSG00000168883.15|ubiquitin specific peptidase 39 	ENST00000450066.2|USP39|ENSG00000168883.15|ubiquitin specific peptidase 39
hg19_v2_chr7_-_91808845_91808845	0.187706	GLI3	ENST00000343318.5|LRRD1|ENSG00000240720.3|leucine-rich repeats and death domain containing 1
hg19_v2_chr7_-_44180884_44180937	0.187186	GLI3	ENST00000458240.1|MYL7|ENSG00000106631.4|myosin, light chain 7, regulatory 	ENST00000223364.3|MYL7|ENSG00000106631.4|myosin, light chain 7, regulatory
hg19_v2_chr15_+_74287118_74287144	0.187121	GLI3	ENST00000563500.1|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr19_+_39897453_39897498	0.187022	GLI3	ENST00000597629.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000248673.3|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000594045.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000594442.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein
hg19_v2_chr8_-_41655107_41655159	0.186717	GLI3	ENST00000347528.4|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000289734.7|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000379758.2|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000396945.1|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000396942.1|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000352337.4|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic
hg19_v2_chr22_-_50700140_50700254	0.186612	GLI3	ENST00000215659.8|MAPK12|ENSG00000188130.9|mitogen-activated protein kinase 12
hg19_v2_chr1_-_1051736_1051754	0.185768	GLI3	ENST00000448924.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000294576.5|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000437760.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000462097.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000475119.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr5_+_80597453_80597475	0.185741	GLI3	ENST00000438268.2|ZCCHC9|ENSG00000131732.7|zinc finger, CCHC domain containing 9
hg19_v2_chr9_+_137533615_137533660	0.18501	GLI3	ENST00000371817.3|COL5A1|ENSG00000130635.11|collagen, type V, alpha 1
hg19_v2_chr12_-_54978086_54978100	0.18467	GLI3	ENST00000553113.1|PPP1R1A|ENSG00000135447.12|protein phosphatase 1, regulatory (inhibitor) subunit 1A
hg19_v2_chr19_-_3869012_3869041	0.184465	GLI3	ENST00000592398.1|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2 	ENST00000262961.4|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2 	ENST00000439086.2|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2
hg19_v2_chr5_-_146833222_146833261	0.184427	GLI3	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr19_-_49250054_49250166	0.183713	GLI3	ENST00000602105.1|IZUMO1|ENSG00000182264.4|izumo sperm-egg fusion 1 	ENST00000332955.2|IZUMO1|ENSG00000182264.4|izumo sperm-egg fusion 1
hg19_v2_chr17_+_73089382_73089451	0.18341	GLI3	ENST00000538213.2|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5 	ENST00000584118.1|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5
hg19_v2_chr6_-_29600832_29600982	0.183329	GLI3	ENST00000377016.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000376977.3|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000377034.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1
hg19_v2_chr4_+_159593418_159593517	0.183084	GLI3	ENST00000507475.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase 	ENST00000307738.5|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase
hg19_v2_chr17_-_27224621_27224759	0.181354	GLI3	ENST00000394906.2|FLOT2|ENSG00000132589.11|flotillin 2 	ENST00000585169.1|FLOT2|ENSG00000132589.11|flotillin 2 	ENST00000394908.4|FLOT2|ENSG00000132589.11|flotillin 2
hg19_v2_chr8_-_142011291_142011307	0.18105	GLI3	ENST00000521059.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr11_-_117103208_117103288	0.180621	GLI3	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr17_-_39324424_39324474	0.179367	GLI3	ENST00000391356.2|KRTAP4-3|ENSG00000196156.3|keratin associated protein 4-3
hg19_v2_chr1_-_139379_139379	0.179179	GLI3	ENST00000423372.3|AL627309.1|ENSG00000237683.5|Uncharacterized protein
hg19_v2_chr11_-_116694009_116694029	0.178848	GLI3	ENST00000357780.3|APOA4|ENSG00000110244.5|apolipoprotein A-IV
hg19_v2_chr19_+_54705025_54705034	0.178841	GLI3	ENST00000441429.1|RPS9|ENSG00000170889.9|ribosomal protein S9
hg19_v2_chr3_-_187009646_187009778	0.177867	GLI3	ENST00000296280.6|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392470.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000169293.6|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000439271.1|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392472.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392475.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
hg19_v2_chr11_-_35441597_35441613	0.177863	GLI3	ENST00000395753.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr1_+_92414928_92414944	0.177821	GLI3	ENST00000362005.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000370389.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000399546.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000423434.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000394530.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000440509.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific
hg19_v2_chr16_+_89979826_89979826	0.177725	GLI3	ENST00000555427.1|MC1R|ENSG00000258839.2|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)
hg19_v2_chr22_+_39436862_39436924	0.17748	GLI3	ENST00000381565.2|APOBEC3F|ENSG00000128394.12|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F 	ENST00000452957.2|APOBEC3G|ENSG00000239713.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
hg19_v2_chr21_+_45079409_45079452	0.177427	GLI3	ENST00000340648.4|RRP1B|ENSG00000160208.11|ribosomal RNA processing 1B
hg19_v2_chr5_+_169931249_169931364	0.177376	GLI3	ENST00000520740.1|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1
hg19_v2_chr3_+_38035610_38035687	0.177273	GLI3	ENST00000465644.1|VILL|ENSG00000136059.10|villin-like
hg19_v2_chr17_+_38333263_38333368	0.177243	GLI3	ENST00000456989.2|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000543876.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000544503.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000264644.6|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000538884.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1
hg19_v2_chr17_+_81037473_81037567	0.176148	GLI3	ENST00000320095.7|METRNL|ENSG00000176845.8|meteorin, glial cell differentiation regulator-like
hg19_v2_chr7_+_99971068_99971128	0.175695	GLI3	ENST00000198536.2|PILRA|ENSG00000085514.11|paired immunoglobin-like type 2 receptor alpha 	ENST00000453419.1|PILRA|ENSG00000085514.11|paired immunoglobin-like type 2 receptor alpha
hg19_v2_chr9_-_122131696_122131745	0.175598	GLI3	ENST00000373964.2|BRINP1|ENSG00000078725.8|bone morphogenetic protein/retinoic acid inducible neural-specific 1 	ENST00000265922.3|BRINP1|ENSG00000078725.8|bone morphogenetic protein/retinoic acid inducible neural-specific 1
hg19_v2_chr6_-_33547975_33547999	0.175483	GLI3	ENST00000442998.2|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1 	ENST00000360661.5|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr2_+_187350973_187351072	0.174447	GLI3	ENST00000544130.1|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chr19_-_54804173_54804302	0.174361	GLI3	ENST00000391744.3|LILRA3|ENSG00000170866.7|leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 	ENST00000251390.3|LILRA3|ENSG00000170866.7|leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3
hg19_v2_chr4_-_176733897_176733906	0.173553	GLI3	ENST00000393658.2|GPM6A|ENSG00000150625.12|glycoprotein M6A
hg19_v2_chr8_+_120428546_120428642	0.173396	GLI3	ENST00000259526.3|NOV|ENSG00000136999.4|nephroblastoma overexpressed
hg19_v2_chr19_-_344786_344826	0.173105	GLI3	ENST00000264819.4|MIER2|ENSG00000105556.6|mesoderm induction early response 1, family member 2
hg19_v2_chr16_+_30937213_30937213	0.172835	GLI3	ENST00000427128.1|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chr18_-_70534745_70534810	0.172719	GLI3	ENST00000583169.1|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1
hg19_v2_chr10_+_45495898_45495923	0.172099	GLI3	ENST00000298299.3|ZNF22|ENSG00000165512.4|zinc finger protein 22
hg19_v2_chr15_+_41186609_41186636	0.172097	GLI3	ENST00000220509.5|VPS18|ENSG00000104142.6|vacuolar protein sorting 18 homolog (S. cerevisiae)
hg19_v2_chr20_+_36661910_36661968	0.171742	GLI3	ENST00000373433.4|RPRD1B|ENSG00000101413.7|regulation of nuclear pre-mRNA domain containing 1B
hg19_v2_chr12_-_110883346_110883392	0.171199	GLI3	ENST00000547365.1|ARPC3|ENSG00000111229.11|actin related protein 2/3 complex, subunit 3, 21kDa
hg19_v2_chr19_-_49121054_49121145	0.170879	GLI3	ENST00000546623.1|RPL18|ENSG00000063177.8|ribosomal protein L18 	ENST00000084795.5|RPL18|ENSG00000063177.8|ribosomal protein L18
hg19_v2_chr10_+_81466084_81466084	0.170191	GLI3	ENST00000342531.2|NUTM2B|ENSG00000188199.6|NUT family member 2B
hg19_v2_chr2_-_48982708_48982837	0.169739	GLI3	ENST00000428232.1|LHCGR|ENSG00000138039.10|luteinizing hormone/choriogonadotropin receptor 	ENST00000405626.1|LHCGR|ENSG00000138039.10|luteinizing hormone/choriogonadotropin receptor 	ENST00000294954.7|LHCGR|ENSG00000138039.10|luteinizing hormone/choriogonadotropin receptor
hg19_v2_chr16_-_75299884_75299919	0.168943	GLI3	ENST00000538440.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000418647.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr9_+_131873227_131873243	0.167866	GLI3	ENST00000358994.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000455292.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr3_+_138067314_138067428	0.167843	GLI3	ENST00000423968.2|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog
hg19_v2_chr16_-_2908155_2908178	0.167427	GLI3	ENST00000571228.1|PRSS22|ENSG00000005001.5|protease, serine, 22 	ENST00000161006.3|PRSS22|ENSG00000005001.5|protease, serine, 22
hg19_v2_chr6_-_53213780_53213947	0.16656	GLI3	ENST00000304434.6|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370918.4|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr2_-_95787738_95787763	0.166439	GLI3	ENST00000272418.2|MRPS5|ENSG00000144029.7|mitochondrial ribosomal protein S5
hg19_v2_chr20_+_44637526_44637554	0.166205	GLI3	ENST00000372330.3|MMP9|ENSG00000100985.7|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
hg19_v2_chr1_-_47697387_47697457	0.165841	GLI3	ENST00000371884.2|TAL1|ENSG00000162367.7|T-cell acute lymphocytic leukemia 1
hg19_v2_chr1_+_209941942_209941964	0.165447	GLI3	ENST00000487271.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3 	ENST00000477431.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr5_-_162887071_162887166	0.16539	GLI3	ENST00000302764.4|NUDCD2|ENSG00000170584.6|NudC domain containing 2
hg19_v2_chr1_-_161600822_161600923	0.165107	GLI3	ENST00000534776.1|FCGR3B|ENSG00000162747.5|Fc fragment of IgG, low affinity IIIb, receptor (CD16b) 	ENST00000540048.1|FCGR3A|ENSG00000203747.5|Fc fragment of IgG, low affinity IIIa, receptor (CD16a)
hg19_v2_chr11_+_117103441_117103452	0.164795	GLI3	ENST00000531287.1|RNF214|ENSG00000167257.6|ring finger protein 214 	ENST00000531452.1|RNF214|ENSG00000167257.6|ring finger protein 214
hg19_v2_chr17_+_7323634_7323679	0.163855	GLI3	ENST00000323675.3|SPEM1|ENSG00000181323.7|spermatid maturation 1
hg19_v2_chr14_+_27342334_27342369	0.163422	GLI3	ENST00000548170.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1	ENST00000552926.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1
hg19_v2_chrX_-_9001351_9001351	0.163214	GLI3	ENST00000362066.3|FAM9B|ENSG00000177138.11|family with sequence similarity 9, member B
hg19_v2_chr19_+_29493456_29493477	0.162924	GLI3	ENST00000591143.1|CTD-2081K17.2|ENSG00000267014.1|CTD-2081K17.2	ENST00000592653.1|CTD-2081K17.2|ENSG00000267014.1|CTD-2081K17.2
hg19_v2_chr22_-_50708781_50708852	0.16253	GLI3	ENST00000449719.2|MAPK11|ENSG00000185386.10|mitogen-activated protein kinase 11 	ENST00000330651.6|MAPK11|ENSG00000185386.10|mitogen-activated protein kinase 11
hg19_v2_chr5_+_67088974_67089048	0.162185	GLI3	ENST00000513234.1|RP11-434D9.1|ENSG00000249364.1|RP11-434D9.1	ENST00000504068.1|RP11-434D9.1|ENSG00000249364.1|RP11-434D9.1	ENST00000515227.1|RP11-434D9.1|ENSG00000249364.1|RP11-434D9.1
hg19_v2_chr19_-_18197799_18197815	0.161994	GLI3	ENST00000430026.3|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1 	ENST00000593993.2|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1
hg19_v2_chr16_+_30034655_30034722	0.161878	GLI3	ENST00000300575.2|C16orf92|ENSG00000167194.3|chromosome 16 open reading frame 92
hg19_v2_chr3_-_15469045_15469056	0.161078	GLI3	ENST00000450816.2|METTL6|ENSG00000206562.7|methyltransferase like 6
hg19_v2_chr16_-_20817753_20817816	0.159884	GLI3	ENST00000389345.5|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000300005.3|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000357967.4|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000569729.1|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2
hg19_v2_chr17_-_6554747_6554802	0.15933	GLI3	ENST00000574128.1|MED31|ENSG00000108590.6|mediator complex subunit 31
hg19_v2_chr12_+_122326662_122326768	0.158978	GLI3	ENST00000261817.2|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000538613.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000542602.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr3_+_49591881_49591940	0.158034	GLI3	ENST00000296452.4|BSN|ENSG00000164061.4|bassoon presynaptic cytomatrix protein
hg19_v2_chr12_+_132568814_132569025	0.158002	GLI3	ENST00000454179.2|EP400NL|ENSG00000185684.8|EP400 N-terminal like 	ENST00000389560.2|EP400NL|ENSG00000185684.8|EP400 N-terminal like 	ENST00000443539.2|EP400NL|ENSG00000185684.8|EP400 N-terminal like 	ENST00000392352.1|EP400NL|ENSG00000185684.8|EP400 N-terminal like
hg19_v2_chr14_-_106586656_106586668	0.157526	GLI3	ENST00000390602.2|IGHV3-13|ENSG00000211942.2|immunoglobulin heavy variable 3-13
hg19_v2_chr6_-_29455738_29455738	0.157142	GLI3	ENST00000377127.3|MAS1L|ENSG00000204687.3|MAS1 oncogene-like
hg19_v2_chr20_-_49253425_49253427	0.156868	GLI3	ENST00000045083.2|FAM65C|ENSG00000042062.7|family with sequence similarity 65, member C
hg19_v2_chr1_+_167691191_167691389	0.156412	GLI3	ENST00000392121.3|MPZL1|ENSG00000197965.7|myelin protein zero-like 1 	ENST00000474859.1|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr11_+_89867803_89867906	0.155316	GLI3	ENST00000321955.4|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000525171.1|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000375944.3|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2
hg19_v2_chr17_+_75315534_75315612	0.15493	GLI3	ENST00000590294.1|SEPT9|ENSG00000184640.13|septin 9 	ENST00000329047.8|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr12_-_96429423_96429439	0.154681	GLI3	ENST00000228740.2|LTA4H|ENSG00000111144.5|leukotriene A4 hydrolase
hg19_v2_chr2_+_234637754_234637773	0.154459	GLI3	ENST00000482026.1|UGT1A3|ENSG00000243135.1|UDP glucuronosyltransferase 1 family, polypeptide A3 	ENST00000609767.1|UGT1A1|ENSG00000241635.3|UDP glucuronosyltransferase 1 family, polypeptide A8
hg19_v2_chr10_+_1034646_1034660	0.154281	GLI3	ENST00000360059.5|GTPBP4|ENSG00000107937.14|GTP binding protein 4 	ENST00000545048.1|GTPBP4|ENSG00000107937.14|GTP binding protein 4
hg19_v2_chr16_-_88923285_88923388	0.153936	GLI3	ENST00000542788.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000569433.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000268695.5|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000568311.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase
hg19_v2_chrX_-_53254358_53254406	0.153889	GLI3	ENST00000404049.3|KDM5C|ENSG00000126012.7|lysine (K)-specific demethylase 5C
hg19_v2_chr19_+_7599597_7599642	0.153842	GLI3	ENST00000414982.3|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000450331.3|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr12_+_53689309_53689366	0.152694	GLI3	ENST00000351500.3|PFDN5|ENSG00000123349.9|prefoldin subunit 5 	ENST00000550846.1|PFDN5|ENSG00000123349.9|prefoldin subunit 5 	ENST00000334478.4|PFDN5|ENSG00000123349.9|prefoldin subunit 5 	ENST00000549759.1|PFDN5|ENSG00000123349.9|prefoldin subunit 5
hg19_v2_chr3_+_124355944_124356002	0.152526	GLI3	ENST00000459915.1|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr21_+_47268058_47268079	0.152295	GLI3	ENST00000400310.1|PCBP3|ENSG00000183570.12|poly(rC) binding protein 3
hg19_v2_chr17_+_66245341_66245370	0.151701	GLI3	ENST00000577985.1|AMZ2|ENSG00000196704.7|archaelysin family metallopeptidase 2
hg19_v2_chrX_+_23682379_23682401	0.151667	GLI3	ENST00000379349.1|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr19_+_20278043_20278083	0.151596	GLI3	ENST00000335117.8|ZNF486|ENSG00000256229.3|zinc finger protein 486
hg19_v2_chrX_-_119077695_119077757	0.150283	GLI3	ENST00000371410.3|NKAP|ENSG00000101882.5|NFKB activating protein
hg19_v2_chrX_+_22056165_22056173	0.15003	GLI3	ENST00000535894.1|PHEX|ENSG00000102174.7|phosphate regulating endopeptidase homolog, X-linked
hg19_v2_chr1_+_87170247_87170276	0.148986	GLI3	ENST00000370558.4|SH3GLB1|ENSG00000097033.10|SH3-domain GRB2-like endophilin B1
hg19_v2_chr11_-_3013603_3013621	0.148933	GLI3	ENST00000380542.4|NAP1L4|ENSG00000205531.8|nucleosome assembly protein 1-like 4 	ENST00000526115.1|NAP1L4|ENSG00000205531.8|nucleosome assembly protein 1-like 4
hg19_v2_chr14_+_75761099_75761114	0.148799	GLI3	ENST00000561000.1|RP11-293M10.5|ENSG00000259687.1|RP11-293M10.5	ENST00000558575.1|RP11-293M10.5|ENSG00000259687.1|RP11-293M10.5
hg19_v2_chr11_+_34073195_34073266	0.148534	GLI3	ENST00000341394.4|CAPRIN1|ENSG00000135387.15|cell cycle associated protein 1
hg19_v2_chr1_-_34630820_34630875	0.147965	GLI3	ENST00000373381.4|CSMD2|ENSG00000121904.13|CUB and Sushi multiple domains 2
hg19_v2_chr17_+_40172097_40172175	0.147709	GLI3	ENST00000393880.1|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000393881.3|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000462043.2|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000449471.4|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000316082.4|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2
hg19_v2_chr3_-_48470838_48470872	0.14742	GLI3	ENST00000358459.4|PLXNB1|ENSG00000164050.8|plexin B1 	ENST00000358536.4|PLXNB1|ENSG00000164050.8|plexin B1
hg19_v2_chrX_+_110924346_110924467	0.14684	GLI3	ENST00000371979.3|ALG13|ENSG00000101901.6|ALG13, UDP-N-acetylglucosaminyltransferase subunit 	ENST00000251943.4|ALG13|ENSG00000101901.6|ALG13, UDP-N-acetylglucosaminyltransferase subunit 	ENST00000486353.1|ALG13|ENSG00000101901.6|ALG13, UDP-N-acetylglucosaminyltransferase subunit 	ENST00000394780.3|ALG13|ENSG00000101901.6|ALG13, UDP-N-acetylglucosaminyltransferase subunit 	ENST00000495283.1|ALG13|ENSG00000101901.6|ALG13, UDP-N-acetylglucosaminyltransferase subunit
hg19_v2_chr7_-_156433195_156433348	0.146468	GLI3	ENST00000333319.6|C7orf13|ENSG00000244291.1|chromosome 7 open reading frame 13
hg19_v2_chr10_-_112064665_112064737	0.146105	GLI3	ENST00000369603.5|SMNDC1|ENSG00000119953.8|survival motor neuron domain containing 1
hg19_v2_chr14_-_107219365_107219365	0.145931	GLI3	ENST00000424969.2|IGHV3-74|ENSG00000224650.2|immunoglobulin heavy variable 3-74
hg19_v2_chr13_+_51796497_51796517	0.145841	GLI3	ENST00000322475.8|FAM124A|ENSG00000150510.11|family with sequence similarity 124A 	ENST00000280057.6|FAM124A|ENSG00000150510.11|family with sequence similarity 124A
hg19_v2_chr22_+_31892261_31892278	0.145664	GLI3	ENST00000432498.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000540643.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000443326.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000414585.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast)
hg19_v2_chr22_+_41258250_41258269	0.145054	GLI3	ENST00000544094.1|XPNPEP3|ENSG00000196236.8|X-prolyl aminopeptidase (aminopeptidase P) 3, putative
hg19_v2_chr10_+_81370689_81370711	0.144927	GLI3	ENST00000372308.3|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000398636.3|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000428376.2|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000372313.5|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000419470.2|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000429958.1|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000439264.1|SFTPA1|ENSG00000122852.10|surfactant protein A1
hg19_v2_chr3_-_125313934_125313934	0.144476	GLI3	ENST00000296220.5|OSBPL11|ENSG00000144909.7|oxysterol binding protein-like 11
hg19_v2_chr15_+_74287035_74287117	0.144069	GLI3	ENST00000395132.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268059.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000354026.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268058.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000565898.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569477.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569965.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000567543.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000436891.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000435786.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000564428.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000359928.4|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr12_+_6977258_6977319	0.144042	GLI3	ENST00000488464.2|TPI1|ENSG00000111669.10|triosephosphate isomerase 1 	ENST00000535434.1|TPI1|ENSG00000111669.10|triosephosphate isomerase 1 	ENST00000493987.1|TPI1|ENSG00000111669.10|triosephosphate isomerase 1
hg19_v2_chr10_-_126847276_126847294	0.143258	GLI3	ENST00000531469.1|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr16_-_11945370_11945442	0.142603	GLI3	ENST00000573251.1|RSL1D1|ENSG00000171490.8|ribosomal L1 domain containing 1 	ENST00000355674.5|RSL1D1|ENSG00000171490.8|ribosomal L1 domain containing 1 	ENST00000542106.1|RSL1D1|ENSG00000171490.8|ribosomal L1 domain containing 1 	ENST00000571133.1|RSL1D1|ENSG00000171490.8|ribosomal L1 domain containing 1
hg19_v2_chr1_+_210111534_210111541	0.142115	GLI3	ENST00000422431.1|SYT14|ENSG00000143469.12|synaptotagmin XIV 	ENST00000534859.1|SYT14|ENSG00000143469.12|synaptotagmin XIV 	ENST00000399639.2|SYT14|ENSG00000143469.12|synaptotagmin XIV 	ENST00000537238.1|SYT14|ENSG00000143469.12|synaptotagmin XIV
hg19_v2_chr17_+_61554413_61554434	0.141388	GLI3	ENST00000538928.1|ACE|ENSG00000159640.10|angiotensin I converting enzyme 	ENST00000290866.4|ACE|ENSG00000159640.10|angiotensin I converting enzyme 	ENST00000428043.1|ACE|ENSG00000159640.10|angiotensin I converting enzyme
hg19_v2_chr1_-_19811132_19811158	0.140883	GLI3	ENST00000433834.1|CAPZB|ENSG00000077549.13|capping protein (actin filament) muscle Z-line, beta
hg19_v2_chr1_+_10509971_10510095	0.140608	GLI3	ENST00000320498.4|CORT|ENSG00000241563.2|cortistatin
hg19_v2_chr3_-_38691119_38691203	0.140279	GLI3	ENST00000333535.4|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000413689.1|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000443581.1|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000425664.1|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000451551.2|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit
hg19_v2_chr11_-_64510409_64510445	0.139899	GLI3	ENST00000394429.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated) 	ENST00000394428.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated)
hg19_v2_chr16_-_75241050_75241083	0.13938	GLI3	ENST00000303037.8|CTRB2|ENSG00000168928.8|chymotrypsinogen B2
hg19_v2_chr11_-_18956556_18956556	0.139122	GLI3	ENST00000302797.3|MRGPRX1|ENSG00000170255.6|MAS-related GPR, member X1
hg19_v2_chr19_-_51340469_51340469	0.138841	GLI3	ENST00000326856.4|KLK15|ENSG00000174562.9|kallikrein-related peptidase 15
hg19_v2_chr5_+_61602055_61602083	0.137284	GLI3	ENST00000381103.2|KIF2A|ENSG00000068796.12|kinesin heavy chain member 2A
hg19_v2_chrX_-_1656000_1656043	0.136953	GLI3	ENST00000381297.4|P2RY8|ENSG00000182162.5|purinergic receptor P2Y, G-protein coupled, 8
hg19_v2_chr5_-_168727713_168727755	0.136667	GLI3	ENST00000404867.3|SLIT3|ENSG00000184347.10|slit homolog 3 (Drosophila)
hg19_v2_chr9_-_35112376_35112395	0.136626	GLI3	ENST00000488109.2|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr7_+_45928079_45928096	0.136083	GLI3	ENST00000468955.1|IGFBP1|ENSG00000146678.5|insulin-like growth factor binding protein 1
hg19_v2_chr1_-_231376867_231376943	0.135937	GLI3	ENST00000366649.2|C1orf131|ENSG00000143633.8|chromosome 1 open reading frame 131 	ENST00000318906.2|C1orf131|ENSG00000143633.8|chromosome 1 open reading frame 131 	ENST00000366651.3|C1orf131|ENSG00000143633.8|chromosome 1 open reading frame 131
hg19_v2_chr15_-_90456156_90456198	0.134973	GLI3	ENST00000357484.5|C15orf38|ENSG00000242498.3|chromosome 15 open reading frame 38
hg19_v2_chr20_+_55043647_55043751	0.134373	GLI3	ENST00000023939.4|RTFDC1|ENSG00000022277.8|replication termination factor 2 domain containing 1 	ENST00000395881.3|RTFDC1|ENSG00000022277.8|replication termination factor 2 domain containing 1 	ENST00000357348.5|RTFDC1|ENSG00000022277.8|replication termination factor 2 domain containing 1 	ENST00000449062.1|RTFDC1|ENSG00000022277.8|replication termination factor 2 domain containing 1 	ENST00000435342.2|RTFDC1|ENSG00000022277.8|replication termination factor 2 domain containing 1
hg19_v2_chr3_-_128840604_128840993	0.133513	GLI3	ENST00000476465.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000315150.5|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393304.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393308.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393307.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393305.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family
hg19_v2_chr4_-_102268484_102268521	0.13306	GLI3	ENST00000394853.4|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme
hg19_v2_chr1_-_147142557_147142620	0.132834	GLI3	ENST00000369238.6|ACP6|ENSG00000162836.7|acid phosphatase 6, lysophosphatidic
hg19_v2_chr14_-_25103388_25103415	0.131724	GLI3	ENST00000526004.1|GZMB|ENSG00000100453.8|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) 	ENST00000415355.3|GZMB|ENSG00000100453.8|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)
hg19_v2_chr16_+_89787937_89787971	0.131453	GLI3	ENST00000443381.2|ZNF276|ENSG00000158805.7|zinc finger protein 276
hg19_v2_chr6_+_41010293_41010457	0.131435	GLI3	ENST00000373161.1|TSPO2|ENSG00000112212.7|translocator protein 2 	ENST00000373158.2|TSPO2|ENSG00000112212.7|translocator protein 2 	ENST00000470917.1|TSPO2|ENSG00000112212.7|translocator protein 2
hg19_v2_chr6_-_33548006_33548069	0.131364	GLI3	ENST00000374467.3|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr11_-_89609185_89609185	0.130603	GLI3	ENST00000329862.6|TRIM64B|ENSG00000189253.7|tripartite motif containing 64B
hg19_v2_chr11_-_123756334_123756379	0.130422	GLI3	ENST00000528595.1|TMEM225|ENSG00000204300.2|transmembrane protein 225 	ENST00000375026.2|TMEM225|ENSG00000204300.2|transmembrane protein 225
hg19_v2_chr17_+_40118759_40118772	0.130364	GLI3	ENST00000393892.3|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr22_+_26565440_26565624	0.130192	GLI3	ENST00000404234.3|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like 	ENST00000529632.2|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like 	ENST00000360929.3|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like 	ENST00000248933.6|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like 	ENST00000343706.4|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like
hg19_v2_chr5_+_179159813_179159851	0.129443	GLI3	ENST00000292599.3|MAML1|ENSG00000161021.7|mastermind-like 1 (Drosophila)
hg19_v2_chrX_+_149009941_149009995	0.129258	GLI3	ENST00000535454.1|MAGEA8|ENSG00000156009.5|melanoma antigen family A, 8 	ENST00000542674.1|MAGEA8|ENSG00000156009.5|melanoma antigen family A, 8 	ENST00000286482.1|MAGEA8|ENSG00000156009.5|melanoma antigen family A, 8
hg19_v2_chr6_+_35436167_35436194	0.128895	GLI3	ENST00000322203.6|RPL10A|ENSG00000198755.6|ribosomal protein L10a
hg19_v2_chr9_+_131873591_131873622	0.127314	GLI3	ENST00000393370.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000337738.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000348141.5|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr16_-_55867146_55867249	0.127224	GLI3	ENST00000422046.2|CES1|ENSG00000198848.8|carboxylesterase 1
hg19_v2_chr12_-_57882498_57882509	0.127069	GLI3	ENST00000550288.1|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr6_+_116601330_116601381	0.126356	GLI3	ENST00000449314.1|RP1-93H18.1|ENSG00000240050.1|RP1-93H18.1	ENST00000453463.1|RP1-93H18.1|ENSG00000240050.1|RP1-93H18.1
hg19_v2_chr11_+_832944_832994	0.126242	GLI3	ENST00000322008.4|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000397421.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000529810.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000526693.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000525333.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000524748.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000527341.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group)
hg19_v2_chr7_+_100860949_100860983	0.12623	GLI3	ENST00000305105.2|ZNHIT1|ENSG00000106400.7|zinc finger, HIT-type containing 1
hg19_v2_chr5_+_176513868_176513893	0.126145	GLI3	ENST00000292408.4|FGFR4|ENSG00000160867.10|fibroblast growth factor receptor 4
hg19_v2_chr14_-_21055874_21055890	0.124964	GLI3	ENST00000553849.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active)
hg19_v2_chr1_+_247670415_247670426	0.124686	GLI3	ENST00000366491.2|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000366489.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000526896.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like
hg19_v2_chr11_+_117070904_117070971	0.12456	GLI3	ENST00000529792.1|TAGLN|ENSG00000149591.12|transgelin
hg19_v2_chr4_+_40194609_40194616	0.12383	GLI3	ENST00000508513.1|RHOH|ENSG00000168421.8|ras homolog family member H
hg19_v2_chr7_+_29846099_29846181	0.123366	GLI3	ENST00000409123.1|WIPF3|ENSG00000122574.6|WAS/WASL interacting protein family, member 3
hg19_v2_chr17_+_65040678_65040733	0.122794	GLI3	ENST00000226021.3|CACNG1|ENSG00000108878.3|calcium channel, voltage-dependent, gamma subunit 1
hg19_v2_chr19_+_37464063_37464127	0.122561	GLI3	ENST00000586353.1|ZNF568|ENSG00000198453.8|zinc finger protein 568 	ENST00000433993.1|ZNF568|ENSG00000198453.8|zinc finger protein 568 	ENST00000592567.1|ZNF568|ENSG00000198453.8|zinc finger protein 568
hg19_v2_chr22_+_40742512_40742543	0.12203	GLI3	ENST00000454266.2|ADSL|ENSG00000239900.7|adenylosuccinate lyase 	ENST00000342312.6|ADSL|ENSG00000239900.7|adenylosuccinate lyase
hg19_v2_chr11_+_46403303_46403316	0.121443	GLI3	ENST00000407067.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2) 	ENST00000395565.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr3_+_47422485_47422562	0.120798	GLI3	ENST00000431726.1|PTPN23|ENSG00000076201.10|protein tyrosine phosphatase, non-receptor type 23 	ENST00000456221.1|PTPN23|ENSG00000076201.10|protein tyrosine phosphatase, non-receptor type 23 	ENST00000265562.4|PTPN23|ENSG00000076201.10|protein tyrosine phosphatase, non-receptor type 23
hg19_v2_chr16_-_17564738_17564834	0.120445	GLI3	ENST00000261381.6|XYLT1|ENSG00000103489.7|xylosyltransferase I
hg19_v2_chr16_+_9185450_9185516	0.119842	GLI3	ENST00000327827.7|C16orf72|ENSG00000182831.7|chromosome 16 open reading frame 72
hg19_v2_chr7_-_142176790_142176842	0.119232	GLI3	ENST00000390369.2|TRBV7-4|ENSG00000253409.1|T cell receptor beta variable 7-4 (gene/pseudogene)
hg19_v2_chr1_+_234509413_234509447	0.116996	GLI3	ENST00000366613.1|COA6|ENSG00000168275.10|cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae) 	ENST00000366612.1|COA6|ENSG00000168275.10|cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae)
hg19_v2_chr22_+_45559722_45559881	0.116643	GLI3	ENST00000347635.4|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000407019.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000424634.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000417702.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000425733.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000430547.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa
hg19_v2_chr6_-_110736742_110736782	0.116342	GLI3	ENST00000368924.3|DDO|ENSG00000203797.5|D-aspartate oxidase 	ENST00000368923.3|DDO|ENSG00000203797.5|D-aspartate oxidase
hg19_v2_chr3_-_128902759_128902770	0.116297	GLI3	ENST00000422453.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000504813.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000512338.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein
hg19_v2_chr14_-_74960030_74960050	0.115964	GLI3	ENST00000553490.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000557510.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr7_+_100187196_100187252	0.115715	GLI3	ENST00000468962.1|FBXO24|ENSG00000106336.8|F-box protein 24 	ENST00000427939.2|FBXO24|ENSG00000106336.8|F-box protein 24
hg19_v2_chrX_-_141293047_141293082	0.114982	GLI3	ENST00000247452.3|MAGEC2|ENSG00000046774.9|melanoma antigen family C, 2
hg19_v2_chr11_+_64949158_64949216	0.114771	GLI3	ENST00000527739.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000526966.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000533129.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000524773.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr3_+_45067659_45067675	0.113531	GLI3	ENST00000296130.4|CLEC3B|ENSG00000163815.5|C-type lectin domain family 3, member B
hg19_v2_chr17_+_10600894_10600974	0.11312	GLI3	ENST00000379774.4|ADPRM|ENSG00000170222.11|ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent
hg19_v2_chr17_+_66508154_66508186	0.113049	GLI3	ENST00000358598.2|PRKAR1A|ENSG00000108946.10|protein kinase, cAMP-dependent, regulatory, type I, alpha
hg19_v2_chr20_+_39765581_39765646	0.112232	GLI3	ENST00000244007.3|PLCG1|ENSG00000124181.10|phospholipase C, gamma 1
hg19_v2_chr1_-_31902614_31902614	0.112077	GLI3	ENST00000596131.1|AC114494.1|ENSG00000268950.1|HCG1787699; Uncharacterized protein
hg19_v2_chr17_+_39261584_39261584	0.111698	GLI3	ENST00000391415.1|KRTAP4-9|ENSG00000212722.6|keratin associated protein 4-9
hg19_v2_chr3_-_107596910_107596940	0.111523	GLI3	ENST00000464359.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000464823.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000466155.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000473528.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608306.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000488852.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608137.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608307.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000609429.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000601385.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000475362.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600240.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600749.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635
hg19_v2_chr2_+_187350883_187350962	0.111409	GLI3	ENST00000337859.6|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chr8_-_42065187_42065242	0.110869	GLI3	ENST00000270189.6|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000352041.3|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000220809.4|PLAT|ENSG00000104368.13|plasminogen activator, tissue
hg19_v2_chr12_+_125549925_125549956	0.110786	GLI3	ENST00000316519.6|AACS|ENSG00000081760.12|acetoacetyl-CoA synthetase
hg19_v2_chr17_+_28884130_28884130	0.110251	GLI3	ENST00000580161.1|TBC1D29|ENSG00000266733.1|TBC1 domain family, member 29
hg19_v2_chr7_-_42971759_42971822	0.10923	GLI3	ENST00000538645.1|PSMA2|ENSG00000106588.6|proteasome (prosome, macropain) subunit, alpha type, 2 	ENST00000445517.1|PSMA2|ENSG00000106588.6|proteasome (prosome, macropain) subunit, alpha type, 2 	ENST00000223321.4|PSMA2|ENSG00000106588.6|proteasome (prosome, macropain) subunit, alpha type, 2
hg19_v2_chr8_+_140943416_140943416	0.10841	GLI3	ENST00000507535.3|C8orf17|ENSG00000250733.3|chromosome 8 open reading frame 17
hg19_v2_chr1_-_40254482_40254550	0.108306	GLI3	ENST00000397360.2|BMP8B|ENSG00000116985.6|bone morphogenetic protein 8b 	ENST00000372827.3|BMP8B|ENSG00000116985.6|bone morphogenetic protein 8b
hg19_v2_chr17_-_7761256_7761397	0.108212	GLI3	ENST00000575208.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr17_+_66243715_66243829	0.108137	GLI3	ENST00000359904.3|AMZ2|ENSG00000196704.7|archaelysin family metallopeptidase 2
hg19_v2_chr12_-_82153087_82153138	0.107911	GLI3	ENST00000547623.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000549396.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr6_-_166582107_166582188	0.107647	GLI3	ENST00000296946.2|T|ENSG00000164458.5|T, brachyury homolog (mouse) 	ENST00000461348.2|T|ENSG00000164458.5|T, brachyury homolog (mouse) 	ENST00000366871.3|T|ENSG00000164458.5|T, brachyury homolog (mouse)
hg19_v2_chr9_-_116061476_116061476	0.107595	GLI3	ENST00000441031.3|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr1_-_110306526_110306553	0.107389	GLI3	ENST00000361965.4|EPS8L3|ENSG00000198758.6|EPS8-like 3 	ENST00000361852.4|EPS8L3|ENSG00000198758.6|EPS8-like 3
hg19_v2_chr11_+_107879459_107879702	0.107152	GLI3	ENST00000393094.2|CUL5|ENSG00000166266.9|cullin 5
hg19_v2_chr11_-_36310958_36310999	0.107148	GLI3	ENST00000532705.1|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000263401.5|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000452374.2|COMMD9|ENSG00000110442.7|COMM domain containing 9
hg19_v2_chr5_+_150226085_150226085	0.106714	GLI3	ENST00000522154.1|IRGM|ENSG00000237693.4|immunity-related GTPase family, M
hg19_v2_chr9_-_116061145_116061145	0.106625	GLI3	ENST00000416588.2|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr22_+_22730353_22730360	0.106587	GLI3	ENST00000390296.2|IGLV5-45|ENSG00000211650.2|immunoglobulin lambda variable 5-45
hg19_v2_chr19_+_9945962_9946023	0.106252	GLI3	ENST00000587625.1|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1 	ENST00000247970.4|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1 	ENST00000588695.1|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1
hg19_v2_chr19_-_20844368_20844407	0.105464	GLI3	ENST00000595094.1|CTC-513N18.7|ENSG00000269110.1|CTC-513N18.7	ENST00000601440.1|ZNF626|ENSG00000188171.10|zinc finger protein 626 	ENST00000291750.6|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr22_+_21213771_21213788	0.105331	GLI3	ENST00000439214.1|SNAP29|ENSG00000099940.7|synaptosomal-associated protein, 29kDa
hg19_v2_chr1_-_176176114_176176259	0.104596	GLI3	ENST00000308769.8|RFWD2|ENSG00000143207.15|ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
hg19_v2_chr3_+_58291965_58292038	0.104496	GLI3	ENST00000445193.3|RPP14|ENSG00000163684.7|ribonuclease P/MRP 14kDa subunit 	ENST00000295959.5|RPP14|ENSG00000163684.7|ribonuclease P/MRP 14kDa subunit 	ENST00000466547.1|RPP14|ENSG00000163684.7|ribonuclease P/MRP 14kDa subunit
hg19_v2_chr16_+_89988259_89988354	0.104001	GLI3	ENST00000554444.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000556565.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain
hg19_v2_chr12_+_100661156_100661210	0.103766	GLI3	ENST00000360820.2|SCYL2|ENSG00000136021.13|SCY1-like 2 (S. cerevisiae)
hg19_v2_chr17_-_37557846_37557920	0.10354	GLI3	ENST00000394294.3|FBXL20|ENSG00000108306.7|F-box and leucine-rich repeat protein 20 	ENST00000583610.1|FBXL20|ENSG00000108306.7|F-box and leucine-rich repeat protein 20 	ENST00000264658.6|FBXL20|ENSG00000108306.7|F-box and leucine-rich repeat protein 20
hg19_v2_chr15_-_41120896_41120922	0.103465	GLI3	ENST00000299174.5|PPP1R14D|ENSG00000166143.5|protein phosphatase 1, regulatory (inhibitor) subunit 14D 	ENST00000427255.2|PPP1R14D|ENSG00000166143.5|protein phosphatase 1, regulatory (inhibitor) subunit 14D
hg19_v2_chr14_-_74959994_74960020	0.103126	GLI3	ENST00000238633.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000434013.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr3_-_126236605_126236621	0.103107	GLI3	ENST00000290868.2|UROC1|ENSG00000159650.4|urocanate hydratase 1
hg19_v2_chr8_-_98290087_98290197	0.103066	GLI3	ENST00000322128.3|TSPYL5|ENSG00000180543.3|TSPY-like 5
hg19_v2_chr1_-_1051455_1051495	0.100856	GLI3	ENST00000379339.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000480643.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000434641.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000421241.2|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr14_-_21056121_21056206	0.100577	GLI3	ENST00000557105.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000398008.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000555841.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000443456.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000432835.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000557503.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000398009.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000554842.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active)
hg19_v2_chr19_-_46318561_46318577	0.100387	GLI3	ENST00000221538.3|RSPH6A|ENSG00000104941.3|radial spoke head 6 homolog A (Chlamydomonas)
hg19_v2_chr16_+_55690205_55690352	0.100068	GLI3	ENST00000379906.2|SLC6A2|ENSG00000103546.14|solute carrier family 6 (neurotransmitter transporter), member 2
hg19_v2_chr17_-_6554877_6554954	0.100066	GLI3	ENST00000225728.3|MED31|ENSG00000108590.6|mediator complex subunit 31 	ENST00000575197.1|MED31|ENSG00000108590.6|mediator complex subunit 31
hg19_v2_chr5_-_6633397_6633445	0.0995614	GLI3	ENST00000264670.6|NSUN2|ENSG00000037474.10|NOP2/Sun RNA methyltransferase family, member 2 	ENST00000539938.1|NSUN2|ENSG00000037474.10|NOP2/Sun RNA methyltransferase family, member 2
hg19_v2_chr12_-_7904201_7904218	0.0988467	GLI3	ENST00000354629.5|CLEC4C|ENSG00000198178.6|C-type lectin domain family 4, member C
hg19_v2_chr8_+_22102626_22102748	0.0987382	GLI3	ENST00000519237.1|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa 	ENST00000397802.4|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
hg19_v2_chr16_-_2031464_2031550	0.0985169	GLI3	ENST00000356120.4|NOXO1|ENSG00000196408.7|NADPH oxidase organizer 1 	ENST00000354249.4|NOXO1|ENSG00000196408.7|NADPH oxidase organizer 1
hg19_v2_chr4_-_1107306_1107369	0.0975256	GLI3	ENST00000433731.2|RNF212|ENSG00000178222.8|ring finger protein 212 	ENST00000333673.5|RNF212|ENSG00000178222.8|ring finger protein 212 	ENST00000382968.5|RNF212|ENSG00000178222.8|ring finger protein 212
hg19_v2_chr9_+_91150016_91150100	0.0958682	GLI3	ENST00000375854.3|NXNL2|ENSG00000130045.11|nucleoredoxin-like 2 	ENST00000375855.3|NXNL2|ENSG00000130045.11|nucleoredoxin-like 2
hg19_v2_chr11_-_35441524_35441578	0.0954635	GLI3	ENST00000395750.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENST00000449068.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr16_-_68269971_68270059	0.0953338	GLI3	ENST00000565858.1|ESRP2|ENSG00000103067.7|epithelial splicing regulatory protein 2
hg19_v2_chr1_+_48688357_48688412	0.0951067	GLI3	ENST00000533824.1|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9 	ENST00000438567.2|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9 	ENST00000236495.5|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9 	ENST00000420136.2|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9
hg19_v2_chr14_+_101292445_101292485	0.0948031	GLI3	ENST00000429159.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000520714.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000522771.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000424076.3|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000423456.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000521404.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000556736.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000451743.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000398518.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000554639.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000452120.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000519709.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000412736.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr4_-_96470108_96470130	0.0945962	GLI3	ENST00000513796.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans)
hg19_v2_chr19_-_48894104_48894170	0.0939735	GLI3	ENST00000597017.1|KDELR1|ENSG00000105438.4|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
hg19_v2_chr7_-_4998802_4998861	0.0937514	GLI3	ENST00000406755.1|MMD2|ENSG00000136297.10|monocyte to macrophage differentiation-associated 2 	ENST00000404774.3|MMD2|ENSG00000136297.10|monocyte to macrophage differentiation-associated 2 	ENST00000401401.3|MMD2|ENSG00000136297.10|monocyte to macrophage differentiation-associated 2
hg19_v2_chr17_+_18996287_18996287	0.093637	GLI3	ENST00000399091.1|AC007952.5|ENSG00000228157.2|Uncharacterized protein ENSP00000382042  	ENST00000443876.1|AC007952.5|ENSG00000228157.2|Uncharacterized protein ENSP00000382042  	ENST00000428928.1|AC007952.5|ENSG00000228157.2|Uncharacterized protein ENSP00000382042
hg19_v2_chr19_-_44100275_44100302	0.0934714	GLI3	ENST00000422989.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q 	ENST00000598324.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q
hg19_v2_chr15_+_75080883_75080890	0.0931093	GLI3	ENST00000567571.1|CSK|ENSG00000103653.12|c-src tyrosine kinase
hg19_v2_chr1_+_201951741_201951794	0.0921888	GLI3	ENST00000295640.4|RNPEP|ENSG00000176393.6|arginyl aminopeptidase (aminopeptidase B) 	ENST00000367286.3|RNPEP|ENSG00000176393.6|arginyl aminopeptidase (aminopeptidase B)
hg19_v2_chr12_+_52281744_52281902	0.0915538	GLI3	ENST00000301190.6|ANKRD33|ENSG00000167612.8|ankyrin repeat domain 33 	ENST00000538991.1|ANKRD33|ENSG00000167612.8|ankyrin repeat domain 33
hg19_v2_chr2_+_159825143_159825190	0.0913016	GLI3	ENST00000454300.1|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENST00000263635.6|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
hg19_v2_chr1_+_207669613_207669686	0.090584	GLI3	ENST00000367049.4|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000529814.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr3_+_127872265_127872344	0.0891679	GLI3	ENST00000254730.6|EEFSEC|ENSG00000132394.6|eukaryotic elongation factor, selenocysteine-tRNA-specific 	ENST00000483457.1|EEFSEC|ENSG00000132394.6|eukaryotic elongation factor, selenocysteine-tRNA-specific
hg19_v2_chr15_-_65321943_65321984	0.0888443	GLI3	ENST00000220058.4|MTFMT|ENSG00000103707.5|mitochondrial methionyl-tRNA formyltransferase
hg19_v2_chr2_+_217363793_217363823	0.0881259	GLI3	ENST00000456586.1|RPL37A|ENSG00000197756.5|ribosomal protein L37a 	ENST00000598925.1|RPL37A|ENSG00000197756.5|ribosomal protein L37a 	ENST00000427280.2|RPL37A|ENSG00000197756.5|ribosomal protein L37a
hg19_v2_chr5_+_169931009_169931065	0.0872042	GLI3	ENST00000328939.4|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1 	ENST00000390656.4|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1
hg19_v2_chr8_-_22526597_22526661	0.0866411	GLI3	ENST00000519513.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000276416.6|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000520292.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000522268.1|BIN3|ENSG00000147439.7|bridging integrator 3
hg19_v2_chr11_-_65374430_65374497	0.0861454	GLI3	ENST00000532507.1|MAP3K11|ENSG00000173327.3|mitogen-activated protein kinase kinase kinase 11
hg19_v2_chr11_-_73720276_73720286	0.0860922	GLI3	ENST00000348534.4|UCP3|ENSG00000175564.8|uncoupling protein 3 (mitochondrial, proton carrier)
hg19_v2_chr9_+_131873659_131873714	0.0860097	GLI3	ENST00000452489.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000347048.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000357197.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000445241.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000355007.3|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000414331.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr12_-_123756781_123756881	0.0855714	GLI3	ENST00000544658.1|CDK2AP1|ENSG00000111328.2|cyclin-dependent kinase 2 associated protein 1
hg19_v2_chr17_-_7760779_7760896	0.0848535	GLI3	ENST00000335155.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575071.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr5_+_140044261_140044464	0.0848436	GLI3	ENST00000358337.5|WDR55|ENSG00000120314.14|WD repeat domain 55
hg19_v2_chr17_-_39203519_39203568	0.0846154	GLI3	ENST00000542137.1|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1 	ENST00000391419.3|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1
hg19_v2_chr14_+_21423611_21423665	0.0841235	GLI3	ENST00000304625.2|RNASE2|ENSG00000169385.2|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)
hg19_v2_chr16_+_67063142_67063153	0.0831885	GLI3	ENST00000412916.2|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr1_-_16563641_16563709	0.0830272	GLI3	ENST00000375599.3|RSG1|ENSG00000132881.7|REM2 and RAB-like small GTPase 1
hg19_v2_chr11_-_65363259_65363279	0.0825944	GLI3	ENST00000342202.4|KCNK7|ENSG00000173338.8|potassium channel, subfamily K, member 7
hg19_v2_chr2_+_238767517_238767539	0.0822248	GLI3	ENST00000404910.2|RAMP1|ENSG00000132329.6|receptor (G protein-coupled) activity modifying protein 1
hg19_v2_chr8_+_103563792_103563808	0.080974	GLI3	ENST00000285402.3|ODF1|ENSG00000155087.3|outer dense fiber of sperm tails 1
hg19_v2_chr19_+_57791806_57791875	0.0808167	GLI3	ENST00000360338.3|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr1_-_110306562_110306649	0.0805476	GLI3	ENST00000369805.3|EPS8L3|ENSG00000198758.6|EPS8-like 3
hg19_v2_chr18_+_3451646_3451722	0.0799996	GLI3	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr5_-_180076580_180076605	0.0795015	GLI3	ENST00000502649.1|FLT4|ENSG00000037280.11|fms-related tyrosine kinase 4
hg19_v2_chr7_-_108096822_108096889	0.0793485	GLI3	ENST00000379028.3|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000413765.2|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000379022.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr20_-_62258394_62258464	0.079328	GLI3	ENST00000370077.1|GMEB2|ENSG00000101216.6|glucocorticoid modulatory element binding protein 2
hg19_v2_chr9_+_135037334_135037450	0.0791006	GLI3	ENST00000393229.3|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000360670.3|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000393228.4|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000372179.3|NTNG2|ENSG00000196358.6|netrin G2
hg19_v2_chr6_-_26027480_26027522	0.0790053	GLI3	ENST00000377364.3|HIST1H4B|ENSG00000124529.3|histone cluster 1, H4b
hg19_v2_chr1_-_235324530_235324613	0.0786768	GLI3	ENST00000447801.1|RBM34|ENSG00000188739.10|RNA binding motif protein 34 	ENST00000366606.3|RBM34|ENSG00000188739.10|RNA binding motif protein 34 	ENST00000429912.1|RBM34|ENSG00000188739.10|RNA binding motif protein 34
hg19_v2_chr19_-_39466396_39466550	0.0781737	GLI3	ENST00000292852.4|FBXO17|ENSG00000269190.1|F-box protein 17
hg19_v2_chr8_-_130587254_130587271	0.0780946	GLI3	ENST00000523151.1|CCDC26|ENSG00000229140.4|coiled-coil domain containing 26
hg19_v2_chr19_+_18699599_18699623	0.0780439	GLI3	ENST00000450195.2|C19orf60|ENSG00000006015.13|chromosome 19 open reading frame 60
hg19_v2_chr19_+_51628165_51628165	0.0776891	GLI3	ENST00000250360.3|SIGLEC9|ENSG00000129450.4|sialic acid binding Ig-like lectin 9 	ENST00000440804.3|SIGLEC9|ENSG00000129450.4|sialic acid binding Ig-like lectin 9
hg19_v2_chr10_+_105156364_105156448	0.0774505	GLI3	ENST00000369797.3|PDCD11|ENSG00000148843.9|programmed cell death 11
hg19_v2_chrX_-_103268259_103268259	0.0762544	GLI3	ENST00000217926.5|H2BFWT|ENSG00000123569.7|H2B histone family, member W, testis-specific
hg19_v2_chr11_+_46403194_46403242	0.0762455	GLI3	ENST00000395569.4|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2) 	ENST00000395566.4|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr1_-_235324772_235324849	0.0759395	GLI3	ENST00000408888.3|RBM34|ENSG00000188739.10|RNA binding motif protein 34
hg19_v2_chr19_+_34663397_34663473	0.0749989	GLI3	ENST00000540746.2|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae) 	ENST00000544216.3|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae) 	ENST00000433627.5|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae)
hg19_v2_chr5_+_172332220_172332371	0.0748706	GLI3	ENST00000518247.1|ERGIC1|ENSG00000113719.11|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 	ENST00000326654.2|ERGIC1|ENSG00000113719.11|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
hg19_v2_chr3_-_62860704_62860872	0.0747565	GLI3	ENST00000490353.2|CADPS|ENSG00000163618.13|Ca++-dependent secretion activator
hg19_v2_chr22_+_18834324_18834324	0.0737944	GLI3	ENST00000342005.4|AC008132.13|ENSG00000161103.7|Uncharacterized protein
hg19_v2_chr2_-_180726232_180726275	0.0736254	GLI3	ENST00000410066.1|ZNF385B|ENSG00000144331.14|zinc finger protein 385B
hg19_v2_chr1_+_11866270_11866317	0.072587	GLI3	ENST00000376497.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000376487.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000376496.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6
hg19_v2_chr12_-_10607084_10607284	0.0720264	GLI3	ENST00000408006.3|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000544822.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000536188.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1
hg19_v2_chr7_+_42971799_42971988	0.0712411	GLI3	ENST00000223324.2|MRPL32|ENSG00000106591.3|mitochondrial ribosomal protein L32
hg19_v2_chr1_+_1217489_1217576	0.0710491	GLI3	ENST00000325425.8|SCNN1D|ENSG00000162572.15|sodium channel, non-voltage-gated 1, delta subunit 	ENST00000400928.3|SCNN1D|ENSG00000162572.15|sodium channel, non-voltage-gated 1, delta subunit
hg19_v2_chr10_+_38717074_38717074	0.070738	GLI3	ENST00000423687.1|LINC00999|ENSG00000225119.3|long intergenic non-protein coding RNA 999
hg19_v2_chr4_+_83956312_83956378	0.0705273	GLI3	ENST00000509317.1|COPS4|ENSG00000138663.4|COP9 signalosome subunit 4 	ENST00000503682.1|COPS4|ENSG00000138663.4|COP9 signalosome subunit 4 	ENST00000511653.1|COPS4|ENSG00000138663.4|COP9 signalosome subunit 4
hg19_v2_chr17_-_27278445_27278624	0.0698976	GLI3	ENST00000268756.3|PHF12|ENSG00000109118.9|PHD finger protein 12 	ENST00000584685.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr10_-_134331695_134331767	0.0696889	GLI3	ENST00000455414.1|RP11-432J24.5|ENSG00000226900.1|RP11-432J24.5
hg19_v2_chr3_+_170075436_170075522	0.0682583	GLI3	ENST00000476188.1|SKIL|ENSG00000136603.9|SKI-like oncogene 	ENST00000259119.4|SKIL|ENSG00000136603.9|SKI-like oncogene 	ENST00000426052.2|SKIL|ENSG00000136603.9|SKI-like oncogene
hg19_v2_chr15_-_65579177_65579253	0.0677681	GLI3	ENST00000444347.2|PARP16|ENSG00000138617.10|poly (ADP-ribose) polymerase family, member 16 	ENST00000261888.6|PARP16|ENSG00000138617.10|poly (ADP-ribose) polymerase family, member 16
hg19_v2_chr2_+_70314579_70314590	0.067629	GLI3	ENST00000303577.5|PCBP1|ENSG00000169564.5|poly(rC) binding protein 1
hg19_v2_chr5_+_154238149_154238267	0.0675633	GLI3	ENST00000519430.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000520671.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000521583.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000518028.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000519404.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000519394.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000518775.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8
hg19_v2_chr14_-_71107921_71108085	0.0674844	GLI3	ENST00000553982.1|CTD-2540L5.5|ENSG00000259115.1|CTD-2540L5.5	ENST00000500016.1|CTD-2540L5.6|ENSG00000245466.1|CTD-2540L5.6
hg19_v2_chr16_-_18801582_18801630	0.0671023	GLI3	ENST00000565420.1|RPS15A|ENSG00000134419.11|ribosomal protein S15a
hg19_v2_chr22_-_41258074_41258130	0.0669014	GLI3	ENST00000307221.4|DNAJB7|ENSG00000172404.4|DnaJ (Hsp40) homolog, subfamily B, member 7
hg19_v2_chr1_+_67673297_67673349	0.0660993	GLI3	ENST00000425614.1|IL23R|ENSG00000162594.10|interleukin 23 receptor 	ENST00000395227.1|IL23R|ENSG00000162594.10|interleukin 23 receptor
hg19_v2_chr13_+_49822041_49822184	0.0653823	GLI3	ENST00000538056.1|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1 	ENST00000251108.6|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1 	ENST00000444959.1|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1 	ENST00000429346.1|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1
hg19_v2_chr6_+_133135580_133135711	0.0651857	GLI3	ENST00000230050.3|RPS12|ENSG00000112306.7|ribosomal protein S12
hg19_v2_chr9_+_33264861_33264940	0.0645996	GLI3	ENST00000223500.8|CHMP5|ENSG00000086065.9|charged multivesicular body protein 5
hg19_v2_chr2_+_220379052_220379131	0.0638038	GLI3	ENST00000347842.3|ASIC4|ENSG00000072182.8|acid-sensing (proton-gated) ion channel family member 4 	ENST00000358078.4|ASIC4|ENSG00000072182.8|acid-sensing (proton-gated) ion channel family member 4
hg19_v2_chr17_+_6899366_6899384	0.0635	GLI3	ENST00000251535.6|ALOX12|ENSG00000108839.7|arachidonate 12-lipoxygenase
hg19_v2_chr1_+_36396791_36396878	0.0633365	GLI3	ENST00000246314.6|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3
hg19_v2_chr11_+_64949343_64949454	0.0632833	GLI3	ENST00000279247.6|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000532285.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000534373.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr12_+_69202975_69203013	0.0627361	GLI3	ENST00000544561.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000393410.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000299252.4|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000360430.2|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000517852.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000545204.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000393413.3|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000350057.5|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000348801.2|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000478070.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase
hg19_v2_chr16_+_67063262_67063364	0.062113	GLI3	ENST00000565389.1|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr3_+_46204959_46205096	0.0619784	GLI3	ENST00000357422.2|CCR3|ENSG00000183625.10|chemokine (C-C motif) receptor 3
hg19_v2_chr15_-_26108355_26108417	0.0619242	GLI3	ENST00000356865.6|ATP10A|ENSG00000206190.7|ATPase, class V, type 10A
hg19_v2_chr7_+_130020932_130020948	0.0618702	GLI3	ENST00000484324.1|CPA1|ENSG00000091704.5|carboxypeptidase A1 (pancreatic)
hg19_v2_chr5_-_79551838_79551854	0.0616661	GLI3	ENST00000509193.1|SERINC5|ENSG00000164300.11|serine incorporator 5 	ENST00000512972.2|SERINC5|ENSG00000164300.11|serine incorporator 5
hg19_v2_chr5_+_175490540_175490540	0.0613189	GLI3	ENST00000515817.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr1_+_202091980_202091991	0.0612944	GLI3	ENST00000367282.5|GPR37L1|ENSG00000170075.8|G protein-coupled receptor 37 like 1
hg19_v2_chr19_+_7733929_7733950	0.0608078	GLI3	ENST00000221515.2|RETN|ENSG00000104918.4|resistin
hg19_v2_chr1_-_63153944_63154110	0.0606037	GLI3	ENST00000340370.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000404627.2|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000251157.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7
hg19_v2_chr12_-_2944184_2944209	0.0605265	GLI3	ENST00000337508.4|NRIP2|ENSG00000053702.10|nuclear receptor interacting protein 2
hg19_v2_chr19_-_18366182_18366229	0.0599948	GLI3	ENST00000355502.3|PDE4C|ENSG00000105650.17|phosphodiesterase 4C, cAMP-specific
hg19_v2_chr8_+_22102611_22102624	0.059752	GLI3	ENST00000306433.4|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
hg19_v2_chr6_-_150212029_150212170	0.0594673	GLI3	ENST00000529948.1|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000357183.4|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000367363.3|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E
hg19_v2_chr15_-_65809581_65809617	0.0585318	GLI3	ENST00000341861.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chrX_-_78622805_78622877	0.0579428	GLI3	ENST00000373298.2|ITM2A|ENSG00000078596.6|integral membrane protein 2A
hg19_v2_chr14_-_74959978_74959992	0.0572996	GLI3	ENST00000541064.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chrX_+_153170189_153170189	0.0570708	GLI3	ENST00000358927.2|AVPR2|ENSG00000126895.9|arginine vasopressin receptor 2
hg19_v2_chr1_-_26372602_26372624	0.0570466	GLI3	ENST00000374278.3|SLC30A2|ENSG00000158014.10|solute carrier family 30 (zinc transporter), member 2 	ENST00000374276.3|SLC30A2|ENSG00000158014.10|solute carrier family 30 (zinc transporter), member 2
hg19_v2_chr19_+_55385731_55385746	0.0566489	GLI3	ENST00000469767.1|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000355524.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391725.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000345937.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000353758.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000359272.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391723.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391724.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for
hg19_v2_chr1_+_207226574_207226656	0.05656	GLI3	ENST00000367080.3|PFKFB2|ENSG00000123836.10|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 	ENST00000367079.2|PFKFB2|ENSG00000123836.10|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
hg19_v2_chr1_-_176176629_176176659	0.056235	GLI3	ENST00000367669.3|RFWD2|ENSG00000143207.15|ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
hg19_v2_chr1_+_15764931_15764945	0.0562122	GLI3	ENST00000375949.4|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin) 	ENST00000375943.2|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin)
hg19_v2_chr11_+_10477733_10477831	0.0561074	GLI3	ENST00000528723.1|AMPD3|ENSG00000133805.11|adenosine monophosphate deaminase 3
hg19_v2_chrY_-_21239221_21239302	0.0558848	GLI3	ENST00000447937.1|TTTY14|ENSG00000176728.3|testis-specific transcript, Y-linked 14 (non-protein coding) 	ENST00000331787.2|TTTY14|ENSG00000176728.3|testis-specific transcript, Y-linked 14 (non-protein coding)
hg19_v2_chr22_+_24951949_24951980	0.0558047	GLI3	ENST00000402849.1|SNRPD3|ENSG00000100028.7|small nuclear ribonucleoprotein D3 polypeptide 18kDa
hg19_v2_chr17_-_13505219_13505299	0.0555778	GLI3	ENST00000284110.1|HS3ST3A1|ENSG00000153976.2|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
hg19_v2_chr17_-_19062424_19062424	0.0552204	GLI3	ENST00000399083.1|AC007952.6|ENSG00000197665.5|Uncharacterized protein
hg19_v2_chr22_-_42322795_42322822	0.0548205	GLI3	ENST00000291232.3|TNFRSF13C|ENSG00000159958.3|tumor necrosis factor receptor superfamily, member 13C
hg19_v2_chr12_-_7848364_7848378	0.0547926	GLI3	ENST00000329913.3|GDF3|ENSG00000184344.3|growth differentiation factor 3
hg19_v2_chr20_+_57466357_57466419	0.0545098	GLI3	ENST00000371095.3|GNAS|ENSG00000087460.19|GNAS complex locus 	ENST00000371085.3|GNAS|ENSG00000087460.19|GNAS complex locus 	ENST00000354359.7|GNAS|ENSG00000087460.19|GNAS complex locus 	ENST00000265620.7|GNAS|ENSG00000087460.19|GNAS complex locus
hg19_v2_chr17_+_74723031_74723047	0.0540866	GLI3	ENST00000586200.1|METTL23|ENSG00000181038.9|methyltransferase like 23
hg19_v2_chr20_+_36149602_36149665	0.0521572	GLI3	ENST00000062104.2|NNAT|ENSG00000053438.7|neuronatin 	ENST00000346199.2|NNAT|ENSG00000053438.7|neuronatin
hg19_v2_chr14_+_72052983_72053003	0.050752	GLI3	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr14_+_103566481_103566481	0.0504853	GLI3	ENST00000380069.3|EXOC3L4|ENSG00000205436.3|exocyst complex component 3-like 4
hg19_v2_chr15_+_75628419_75628446	0.0504098	GLI3	ENST00000567377.1|COMMD4|ENSG00000140365.11|COMM domain containing 4 	ENST00000562789.1|COMMD4|ENSG00000140365.11|COMM domain containing 4 	ENST00000568301.1|COMMD4|ENSG00000140365.11|COMM domain containing 4
hg19_v2_chr17_+_43238438_43238461	0.0500483	GLI3	ENST00000593138.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2 	ENST00000586681.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chr2_-_201936302_201936416	0.0496171	GLI3	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr11_+_46402297_46402306	0.0492654	GLI3	ENST00000405308.2|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr14_-_107114267_107114277	0.0491736	GLI3	ENST00000454421.2|IGHV3-64|ENSG00000223648.2|immunoglobulin heavy variable 3-64
hg19_v2_chr22_+_31892373_31892556	0.0486464	GLI3	ENST00000443011.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000400289.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000444859.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000400288.2|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast)
hg19_v2_chr1_+_32479430_32479597	0.047053	GLI3	ENST00000327300.7|KHDRBS1|ENSG00000121774.13|KH domain containing, RNA binding, signal transduction associated 1 	ENST00000492989.1|KHDRBS1|ENSG00000121774.13|KH domain containing, RNA binding, signal transduction associated 1
hg19_v2_chr9_+_131452239_131452285	0.0469839	GLI3	ENST00000372688.4|SET|ENSG00000119335.12|SET nuclear oncogene 	ENST00000372686.5|SET|ENSG00000119335.12|SET nuclear oncogene
hg19_v2_chr2_+_232826211_232826293	0.0469779	GLI3	ENST00000325385.7|DIS3L2|ENSG00000144535.15|DIS3 mitotic control homolog (S. cerevisiae)-like 2 	ENST00000360410.4|DIS3L2|ENSG00000144535.15|DIS3 mitotic control homolog (S. cerevisiae)-like 2
hg19_v2_chr15_+_75628394_75628414	0.0467018	GLI3	ENST00000564815.1|COMMD4|ENSG00000140365.11|COMM domain containing 4 	ENST00000338995.6|COMMD4|ENSG00000140365.11|COMM domain containing 4
hg19_v2_chr19_+_18699535_18699591	0.0464476	GLI3	ENST00000358607.6|C19orf60|ENSG00000006015.13|chromosome 19 open reading frame 60
hg19_v2_chr1_+_21766588_21766637	0.0454596	GLI3	ENST00000454000.2|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3 	ENST00000318220.6|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3 	ENST00000318249.5|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3
hg19_v2_chr22_+_25595817_25595840	0.045453	GLI3	ENST00000215855.2|CRYBB3|ENSG00000100053.5|crystallin, beta B3 	ENST00000404334.1|CRYBB3|ENSG00000100053.5|crystallin, beta B3
hg19_v2_chr17_-_7761172_7761209	0.0451448	GLI3	ENST00000333775.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575771.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr12_-_57882577_57882614	0.0449366	GLI3	ENST00000393797.2|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr9_+_33265011_33265059	0.0445021	GLI3	ENST00000419016.2|CHMP5|ENSG00000086065.9|charged multivesicular body protein 5
hg19_v2_chr17_-_3461092_3461126	0.0440741	GLI3	ENST00000301365.4|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3 	ENST00000572519.1|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3
hg19_v2_chr22_-_21482352_21482352	0.043986	GLI3	ENST00000329949.3|POM121L7|ENSG00000239511.1|POM121 transmembrane nucleoporin-like 7
hg19_v2_chr15_-_63449663_63449698	0.0438609	GLI3	ENST00000439025.1|RPS27L|ENSG00000185088.8|ribosomal protein S27-like
hg19_v2_chr2_+_25015968_25016029	0.0434837	GLI3	ENST00000380834.2|CENPO|ENSG00000138092.6|centromere protein O 	ENST00000473706.1|CENPO|ENSG00000138092.6|centromere protein O
hg19_v2_chr9_+_15553000_15553054	0.0434717	GLI3	ENST00000297641.3|CCDC171|ENSG00000164989.11|coiled-coil domain containing 171
hg19_v2_chr12_-_8218997_8219067	0.0432375	GLI3	ENST00000307637.4|C3AR1|ENSG00000171860.4|complement component 3a receptor 1
hg19_v2_chr19_-_12476443_12476467	0.0432256	GLI3	ENST00000242804.4|ZNF442|ENSG00000198342.5|zinc finger protein 442 	ENST00000438182.1|ZNF442|ENSG00000198342.5|zinc finger protein 442
hg19_v2_chr7_+_23338819_23338973	0.0431044	GLI3	ENST00000466681.1|MALSU1|ENSG00000156928.4|mitochondrial assembly of ribosomal large subunit 1
hg19_v2_chr6_-_26032288_26032337	0.0430415	GLI3	ENST00000244661.2|HIST1H3B|ENSG00000124693.2|histone cluster 1, H3b
hg19_v2_chr1_+_202431859_202431871	0.0427861	GLI3	ENST00000391959.3|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000367270.4|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr7_+_87563557_87563735	0.0427536	GLI3	ENST00000439864.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000412441.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398201.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000265727.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000315984.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398209.3|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr2_-_11272234_11272390	0.0427151	GLI3	ENST00000590207.1|AC062028.1|ENSG00000145063.10|AC062028.1	ENST00000417697.2|AC062028.1|ENSG00000145063.10|AC062028.1	ENST00000396164.1|AC062028.1|ENSG00000145063.10|AC062028.1	ENST00000536743.1|AC062028.1|ENSG00000145063.10|AC062028.1	ENST00000544306.1|AC062028.1|ENSG00000145063.10|AC062028.1
hg19_v2_chr19_+_35759968_35760042	0.0426429	GLI3	ENST00000222305.3|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000595068.1|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000379134.3|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000594064.1|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000598058.1|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting
hg19_v2_chr1_+_160765884_160765903	0.0421078	GLI3	ENST00000392203.4|LY9|ENSG00000122224.13|lymphocyte antigen 9
hg19_v2_chr9_+_87285539_87285575	0.0416718	GLI3	ENST00000359847.3|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr2_-_89266286_89266286	0.0416606	GLI3	ENST00000464162.1|IGKV1-6|ENSG00000239855.1|immunoglobulin kappa variable 1-6
hg19_v2_chr17_+_3323862_3323862	0.0412588	GLI3	ENST00000291231.1|OR3A3|ENSG00000159961.1|olfactory receptor, family 3, subfamily A, member 3
hg19_v2_chr9_+_8858102_8858147	0.040696	GLI3	ENST00000447950.1|RP11-75C9.1|ENSG00000225706.1|RP11-75C9.1	ENST00000430766.1|RP11-75C9.1|ENSG00000225706.1|RP11-75C9.1
hg19_v2_chr11_+_66025938_66026016	0.0404298	GLI3	ENST00000394066.2|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr8_-_145980968_145980996	0.0395778	GLI3	ENST00000292562.7|ZNF251|ENSG00000198169.4|zinc finger protein 251
hg19_v2_chr1_+_32671236_32671280	0.0391182	GLI3	ENST00000537469.1|IQCC|ENSG00000160051.7|IQ motif containing C 	ENST00000291358.6|IQCC|ENSG00000160051.7|IQ motif containing C
hg19_v2_chr11_-_46615498_46615675	0.0388839	GLI3	ENST00000533727.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000534300.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000528950.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000526606.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1
hg19_v2_chr4_+_79567314_79567348	0.0388362	GLI3	ENST00000503539.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000504675.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr11_+_89867681_89867697	0.0381452	GLI3	ENST00000534061.1|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2
hg19_v2_chr15_+_75315896_75315956	0.037925	GLI3	ENST00000342932.3|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000564923.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000569562.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000568649.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase
hg19_v2_chr7_-_151217001_151217019	0.0378547	GLI3	ENST00000262187.5|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr16_-_2318055_2318104	0.0367331	GLI3	ENST00000561518.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000561718.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000567147.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000562690.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000569598.2|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr15_+_75105170_75105194	0.0364728	GLI3	ENST00000379709.3|LMAN1L|ENSG00000140506.12|lectin, mannose-binding, 1 like
hg19_v2_chr4_+_110354928_110355030	0.0361736	GLI3	ENST00000504968.2|SEC24B|ENSG00000138802.7|SEC24 family member B 	ENST00000399100.2|SEC24B|ENSG00000138802.7|SEC24 family member B 	ENST00000265175.5|SEC24B|ENSG00000138802.7|SEC24 family member B
hg19_v2_chr7_-_151217166_151217206	0.0360735	GLI3	ENST00000496004.1|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr17_-_21117902_21117937	0.0355771	GLI3	ENST00000317635.5|TMEM11|ENSG00000178307.5|transmembrane protein 11
hg19_v2_chr3_+_46598888_46598888	0.034952	GLI3	ENST00000599511.1|LUZPP1|ENSG00000268324.1|HCG1777807; Leucine zipper protein 3; Uncharacterized protein
hg19_v2_chr9_-_26947453_26947473	0.0346329	GLI3	ENST00000397292.3|PLAA|ENSG00000137055.10|phospholipase A2-activating protein
hg19_v2_chr12_-_112847354_112847457	0.0345071	GLI3	ENST00000550566.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000553213.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000424576.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000202773.9|RPL6|ENSG00000089009.11|ribosomal protein L6
hg19_v2_chr4_+_140374961_140375016	0.0334995	GLI3	ENST00000305626.5|RAB33B|ENSG00000172007.5|RAB33B, member RAS oncogene family
hg19_v2_chr10_+_134000404_134000432	0.0331298	GLI3	ENST00000338492.4|DPYSL4|ENSG00000151640.8|dihydropyrimidinase-like 4 	ENST00000368629.1|DPYSL4|ENSG00000151640.8|dihydropyrimidinase-like 4
hg19_v2_chr6_-_170151603_170151713	0.032795	GLI3	ENST00000366774.3|TCTE3|ENSG00000184786.4|t-complex-associated-testis-expressed 3
hg19_v2_chr12_+_72148614_72148699	0.0325823	GLI3	ENST00000261263.3|RAB21|ENSG00000080371.4|RAB21, member RAS oncogene family
hg19_v2_chr9_-_21368075_21368075	0.0321001	GLI3	ENST00000449498.1|IFNA13|ENSG00000233816.2|interferon, alpha 13
hg19_v2_chr5_+_218356_218453	0.0315122	GLI3	ENST00000264932.6|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000504309.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000510361.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
hg19_v2_chr4_-_5021164_5021199	0.0312872	GLI3	ENST00000506508.1|CYTL1|ENSG00000170891.6|cytokine-like 1 	ENST00000509419.1|CYTL1|ENSG00000170891.6|cytokine-like 1 	ENST00000307746.4|CYTL1|ENSG00000170891.6|cytokine-like 1
hg19_v2_chr12_+_99038998_99039078	0.0310492	GLI3	ENST00000359972.2|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000357310.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000339433.3|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000333991.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1
hg19_v2_chr8_+_22436635_22436663	0.0308679	GLI3	ENST00000452226.1|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000397760.4|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000339162.7|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000397761.2|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique)
hg19_v2_chr7_-_2883928_2883993	0.0288977	GLI3	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr12_-_31158902_31158938	0.0279894	GLI3	ENST00000544329.1|RP11-551L14.4|ENSG00000226472.3|RP11-551L14.4	ENST00000418254.2|RP11-551L14.4|ENSG00000226472.3|RP11-551L14.4	ENST00000222396.5|RP11-551L14.4|ENSG00000226472.3|RP11-551L14.4
hg19_v2_chr2_+_20068628_20068661	0.027815	GLI3	ENST00000449086.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954 	ENST00000456119.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954 	ENST00000433669.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954
hg19_v2_chr5_-_1799965_1800009	0.0262019	GLI3	ENST00000508987.1|MRPL36|ENSG00000171421.8|mitochondrial ribosomal protein L36
hg19_v2_chr1_-_182573514_182573543	0.0260917	GLI3	ENST00000367558.5|RGS16|ENSG00000143333.6|regulator of G-protein signaling 16
hg19_v2_chr9_+_139877445_139877445	0.0260424	GLI3	ENST00000408973.2|LCNL1|ENSG00000214402.6|lipocalin-like 1
hg19_v2_chr5_-_95297534_95297563	0.0256049	GLI3	ENST00000513343.1|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2 	ENST00000431061.2|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2
hg19_v2_chr19_+_4153598_4153665	0.0254856	GLI3	ENST00000078445.2|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3 	ENST00000252587.3|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3 	ENST00000595923.1|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3 	ENST00000602257.1|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3 	ENST00000602147.1|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3
hg19_v2_chr8_+_144766669_144766683	0.0254014	GLI3	ENST00000526315.1|ZNF707|ENSG00000181135.11|zinc finger protein 707 	ENST00000532205.1|ZNF707|ENSG00000181135.11|zinc finger protein 707
hg19_v2_chr6_+_42883727_42883740	0.0245435	GLI3	ENST00000304672.1|PTCRA|ENSG00000171611.5|pre T-cell antigen receptor alpha 	ENST00000441198.1|PTCRA|ENSG00000171611.5|pre T-cell antigen receptor alpha 	ENST00000446507.1|PTCRA|ENSG00000171611.5|pre T-cell antigen receptor alpha
hg19_v2_chr17_-_2207062_2207116	0.0235502	GLI3	ENST00000263073.6|SMG6|ENSG00000070366.9|SMG6 nonsense mediated mRNA decay factor
hg19_v2_chr14_-_51561784_51561854	0.0232154	GLI3	ENST00000360392.4|TRIM9|ENSG00000100505.9|tripartite motif containing 9
hg19_v2_chr1_-_41487415_41487426	0.0231371	GLI3	ENST00000372611.1|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr19_-_58090240_58090295	0.023101	GLI3	ENST00000196489.3|ZNF416|ENSG00000083817.8|zinc finger protein 416
hg19_v2_chr18_-_12884150_12884250	0.023058	GLI3	ENST00000591115.1|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2 	ENST00000309660.5|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2
hg19_v2_chr20_+_34742650_34742678	0.0229647	GLI3	ENST00000373945.1|EPB41L1|ENSG00000088367.16|erythrocyte membrane protein band 4.1-like 1 	ENST00000338074.2|EPB41L1|ENSG00000088367.16|erythrocyte membrane protein band 4.1-like 1
hg19_v2_chr16_+_55690002_55690023	0.0226928	GLI3	ENST00000414754.3|SLC6A2|ENSG00000103546.14|solute carrier family 6 (neurotransmitter transporter), member 2
hg19_v2_chr16_-_22385901_22385947	0.0224021	GLI3	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr11_-_64511789_64512061	0.0222999	GLI3	ENST00000419843.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated) 	ENST00000394430.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated)
hg19_v2_chr6_-_116601044_116601106	0.02189	GLI3	ENST00000368608.3|TSPYL1|ENSG00000189241.6|TSPY-like 1
hg19_v2_chr1_+_36690011_36690092	0.0218452	GLI3	ENST00000354618.5|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3 	ENST00000469141.2|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3 	ENST00000478853.1|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3
hg19_v2_chr11_+_60739249_60739338	0.021538	GLI3	ENST00000542157.1|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000433107.2|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000452451.2|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000352009.5|CD6|ENSG00000013725.10|CD6 molecule
hg19_v2_chr16_-_3767551_3767598	0.021441	GLI3	ENST00000246957.5|TRAP1|ENSG00000126602.6|TNF receptor-associated protein 1
hg19_v2_chr6_-_27841289_27841318	0.0213454	GLI3	ENST00000355981.2|HIST1H4L|ENSG00000198558.2|histone cluster 1, H4l
hg19_v2_chr1_-_211752073_211752084	0.0211165	GLI3	ENST00000367001.4|SLC30A1|ENSG00000170385.9|solute carrier family 30 (zinc transporter), member 1
hg19_v2_chr1_-_202129105_202129140	0.02105	GLI3	ENST00000367279.4|PTPN7|ENSG00000143851.11|protein tyrosine phosphatase, non-receptor type 7
hg19_v2_chr5_+_41925325_41925416	0.0202774	GLI3	ENST00000296812.2|FBXO4|ENSG00000151876.8|F-box protein 4 	ENST00000281623.3|FBXO4|ENSG00000151876.8|F-box protein 4 	ENST00000509134.1|FBXO4|ENSG00000151876.8|F-box protein 4
hg19_v2_chr8_+_21882244_21882362	0.0202136	GLI3	ENST00000289820.6|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2 	ENST00000381530.5|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2
hg19_v2_chr1_-_1310870_1310920	0.0202088	GLI3	ENST00000338338.5|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1
hg19_v2_chr12_-_82152420_82152441	0.0199323	GLI3	ENST00000552948.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000548586.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr3_-_9811595_9811666	0.0186936	GLI3	ENST00000256460.3|CAMK1|ENSG00000134072.6|calcium/calmodulin-dependent protein kinase I
hg19_v2_chr11_+_66025167_66025190	0.0185907	GLI3	ENST00000394067.2|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000316924.5|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000421552.1|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000394078.1|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr4_+_79567362_79567380	0.0185254	GLI3	ENST00000512322.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr19_+_35606692_35606769	0.0181732	GLI3	ENST00000406242.3|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3 	ENST00000454903.2|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3
hg19_v2_chr7_-_151107106_151107129	0.0180349	GLI3	ENST00000334493.6|WDR86|ENSG00000187260.11|WD repeat domain 86
hg19_v2_chr8_+_29953163_29953190	0.0172256	GLI3	ENST00000518192.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1
hg19_v2_chr8_+_21881636_21881651	0.0171859	GLI3	ENST00000520125.1|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2 	ENST00000521157.1|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2 	ENST00000397940.1|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2 	ENST00000522813.1|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2
hg19_v2_chr6_-_33679452_33679528	0.0169536	GLI3	ENST00000374231.4|UQCC2|ENSG00000137288.5|ubiquinol-cytochrome c reductase complex assembly factor 2 	ENST00000607484.1|UQCC2|ENSG00000137288.5|ubiquinol-cytochrome c reductase complex assembly factor 2 	ENST00000374214.3|UQCC2|ENSG00000137288.5|ubiquinol-cytochrome c reductase complex assembly factor 2
hg19_v2_chr2_+_47799601_47799601	0.0167371	GLI3	ENST00000601243.1|AC138655.1|ENSG00000269563.1|CDNA: FLJ23120 fis, clone LNG07989; HCG1987724; Uncharacterized protein
hg19_v2_chr1_-_153538292_153538342	0.016516	GLI3	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr17_+_77030267_77030391	0.0163836	GLI3	ENST00000581774.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr15_+_85923856_85923987	0.0162257	GLI3	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr10_+_134145614_134145724	0.0159603	GLI3	ENST00000368615.3|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000392638.2|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000344079.5|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000356571.4|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000368614.3|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27
hg19_v2_chr19_-_11494975_11495003	0.0150982	GLI3	ENST00000222139.6|EPOR|ENSG00000187266.9|erythropoietin receptor 	ENST00000592375.2|EPOR|ENSG00000187266.9|erythropoietin receptor
hg19_v2_chr3_+_47844399_47844457	0.0148969	GLI3	ENST00000446256.2|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30 	ENST00000445061.1|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30
hg19_v2_chr2_+_234545092_234545100	0.0135835	GLI3	ENST00000344644.5|UGT1A10|ENSG00000242515.1|UDP glucuronosyltransferase 1 family, polypeptide A10
hg19_v2_chr1_-_160681593_160681641	0.0130943	GLI3	ENST00000368045.3|CD48|ENSG00000117091.5|CD48 molecule 	ENST00000368046.3|CD48|ENSG00000117091.5|CD48 molecule
hg19_v2_chr16_-_89556942_89557020	0.012985	GLI3	ENST00000301030.4|ANKRD11|ENSG00000167522.10|ankyrin repeat domain 11
hg19_v2_chr22_+_21319396_21319465	0.0128265	GLI3	ENST00000399167.2|AIFM3|ENSG00000183773.11|apoptosis-inducing factor, mitochondrion-associated, 3 	ENST00000399163.2|AIFM3|ENSG00000183773.11|apoptosis-inducing factor, mitochondrion-associated, 3 	ENST00000441376.2|AIFM3|ENSG00000183773.11|apoptosis-inducing factor, mitochondrion-associated, 3
hg19_v2_chr2_+_20068606_20068626	0.0125978	GLI3	ENST00000607100.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954
hg19_v2_chr7_-_33148975_33149050	0.0123108	GLI3	ENST00000297157.3|RP9|ENSG00000164610.4|retinitis pigmentosa 9 (autosomal dominant)
hg19_v2_chr6_-_42016385_42016706	0.0110519	GLI3	ENST00000502771.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000508143.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000514588.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000510503.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000415497.2|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000372988.4|CCND3|ENSG00000112576.8|cyclin D3
hg19_v2_chr21_-_35288284_35288284	0.0109867	GLI3	ENST00000290299.2|ATP5O|ENSG00000241837.2|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
hg19_v2_chr17_-_39296739_39296798	0.0107832	GLI3	ENST00000345847.4|KRTAP4-6|ENSG00000198090.3|keratin associated protein 4-6
hg19_v2_chr7_+_106809406_106809460	0.0103742	GLI3	ENST00000468410.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000478930.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000464009.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000222574.4|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr12_-_122751002_122751068	0.0100539	GLI3	ENST00000267199.4|VPS33A|ENSG00000139719.5|vacuolar protein sorting 33 homolog A (S. cerevisiae)
hg19_v2_chr2_+_231921574_231921639	0.0100234	GLI3	ENST00000308696.6|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 	ENST00000373635.4|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 	ENST00000440838.1|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 	ENST00000409643.1|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
hg19_v2_chr13_+_111806083_111806105	0.00983005	GLI3	ENST00000375736.4|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr17_+_43239191_43239212	0.00878837	GLI3	ENST00000589230.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chr1_-_41487383_41487402	0.00843055	GLI3	ENST00000302946.8|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000372613.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000439569.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000397197.2|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr17_+_39388700_39388715	0.00836719	GLI3	ENST00000411528.2|KRTAP9-3|ENSG00000204873.3|keratin associated protein 9-3
hg19_v2_chr1_+_8021954_8022038	0.0081954	GLI3	ENST00000377491.1|PARK7|ENSG00000116288.8|parkinson protein 7 	ENST00000377488.1|PARK7|ENSG00000116288.8|parkinson protein 7
hg19_v2_chr4_+_83956237_83956248	0.00803802	GLI3	ENST00000264389.2|COPS4|ENSG00000138663.4|COP9 signalosome subunit 4
hg19_v2_chr11_-_73587719_73588033	0.00793867	GLI3	ENST00000545127.1|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 	ENST00000537289.1|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 	ENST00000355693.4|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae)
hg19_v2_chr1_-_55266865_55266876	0.00791402	GLI3	ENST00000371274.4|TTC22|ENSG00000006555.6|tetratricopeptide repeat domain 22
hg19_v2_chr16_+_57702210_57702233	0.00773092	GLI3	ENST00000450388.3|GPR97|ENSG00000182885.12|G protein-coupled receptor 97
hg19_v2_chr3_-_128902729_128902753	0.00726741	GLI3	ENST00000451728.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000446936.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000502976.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000500450.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000441626.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein
hg19_v2_chr11_+_2407287_2407325	0.0072619	GLI3	ENST00000381036.3|CD81|ENSG00000110651.7|CD81 molecule 	ENST00000492252.1|CD81|ENSG00000110651.7|CD81 molecule
hg19_v2_chr2_-_26101374_26101389	0.00688383	GLI3	ENST00000435504.4|ASXL2|ENSG00000143970.12|additional sex combs like 2 (Drosophila)
hg19_v2_chr8_+_98656336_98656535	0.00633403	GLI3	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr5_-_180242534_180242567	0.00611816	GLI3	ENST00000333055.3|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 	ENST00000513431.1|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr1_-_156722015_156722034	0.00597736	GLI3	ENST00000368209.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr4_-_6692246_6692274	0.00573964	GLI3	ENST00000499502.2|RP11-539L10.2|ENSG00000246526.2|RP11-539L10.2
hg19_v2_chr11_+_64058820_64058881	0.00520378	GLI3	ENST00000422670.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr1_+_180165672_180165817	0.00516866	GLI3	ENST00000443059.1|QSOX1|ENSG00000116260.12|quiescin Q6 sulfhydryl oxidase 1
hg19_v2_chr4_-_170948361_170948375	0.00513878	GLI3	ENST00000393702.3|MFAP3L|ENSG00000198948.7|microfibrillar-associated protein 3-like
hg19_v2_chr22_+_25003606_25003622	0.00451337	GLI3	ENST00000432867.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr1_-_146040968_146040968	0.00443533	GLI3	ENST00000401010.3|NBPF11|ENSG00000152042.13|neuroblastoma breakpoint family, member 11
hg19_v2_chr22_+_50925213_50925305	0.00415056	GLI3	ENST00000395733.3|MIOX|ENSG00000100253.8|myo-inositol oxygenase 	ENST00000216075.6|MIOX|ENSG00000100253.8|myo-inositol oxygenase 	ENST00000395732.3|MIOX|ENSG00000100253.8|myo-inositol oxygenase
hg19_v2_chr3_+_156008809_156008839	0.00396929	GLI3	ENST00000302490.8|KCNAB1|ENSG00000169282.13|potassium voltage-gated channel, shaker-related subfamily, beta member 1
hg19_v2_chr14_+_103566665_103566665	0.00384336	GLI3	ENST00000559116.1|EXOC3L4|ENSG00000205436.3|exocyst complex component 3-like 4
hg19_v2_chr5_+_148960931_148961073	0.00340993	GLI3	ENST00000333677.6|ARHGEF37|ENSG00000183111.7|Rho guanine nucleotide exchange factor (GEF) 37
hg19_v2_chr19_+_19779619_19779670	0.00174286	GLI3	ENST00000444249.2|ZNF101|ENSG00000181896.7|zinc finger protein 101 	ENST00000592502.1|ZNF101|ENSG00000181896.7|zinc finger protein 101
hg19_v2_chr1_+_201708992_201709011	0.00165006	GLI3	ENST00000367295.1|NAV1|ENSG00000134369.11|neuron navigator 1
hg19_v2_chr17_-_26697304_26697373	0.00136408	GLI3	ENST00000536498.1|VTN|ENSG00000109072.9|vitronectin
