hg19_v2_chr4_+_55524085_55524110	1.24997	GCUACAU	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chr5_+_140254884_140255058	1.03224	GCUACAU	ENST00000398631.2|PCDHA12|ENSG00000251664.2|protocadherin alpha 12
hg19_v2_chr5_+_140227048_140227048	1.02892	GCUACAU	ENST00000532602.1|PCDHA9|ENSG00000204961.5|protocadherin alpha 9
hg19_v2_chr5_+_140248518_140248689	1.02444	GCUACAU	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chr5_+_140213815_140213969	0.998142	GCUACAU	ENST00000525929.1|PCDHA7|ENSG00000204963.4|protocadherin alpha 7 	ENST00000378125.3|PCDHA7|ENSG00000204963.4|protocadherin alpha 7
hg19_v2_chr9_-_3525968_3526016	0.978092	GCUACAU	ENST00000382004.3|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000302303.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000449190.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression)
hg19_v2_chr5_+_140220769_140220907	0.958808	GCUACAU	ENST00000531613.1|PCDHA8|ENSG00000204962.4|protocadherin alpha 8 	ENST00000378123.3|PCDHA8|ENSG00000204962.4|protocadherin alpha 8
hg19_v2_chr6_+_16129308_16129402	0.885853	GCUACAU	ENST00000356840.3|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein 	ENST00000349606.4|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein
hg19_v2_chr16_+_28303804_28303864	0.69567	GCUACAU	ENST00000341901.4|SBK1|ENSG00000188322.4|SH3 domain binding kinase 1
hg19_v2_chr2_-_213403565_213403584	0.66772	GCUACAU	ENST00000342788.4|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4 	ENST00000436443.1|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4
hg19_v2_chr1_+_114472222_114472377	0.648172	GCUACAU	ENST00000369558.1|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1 	ENST00000369561.4|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr14_+_74111578_74111730	0.613554	GCUACAU	ENST00000554113.1|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000555631.2|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000553645.2|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000311089.3|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000555919.3|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000554339.1|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000554871.1|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1
hg19_v2_chr9_+_976964_976964	0.603861	GCUACAU	ENST00000190165.2|DMRT3|ENSG00000064218.4|doublesex and mab-3 related transcription factor 3
hg19_v2_chr5_+_140165876_140165876	0.50314	GCUACAU	ENST00000504120.2|PCDHA1|ENSG00000204970.5|protocadherin alpha 1 	ENST00000394633.3|PCDHA1|ENSG00000204970.5|protocadherin alpha 1 	ENST00000378133.3|PCDHA1|ENSG00000204970.5|protocadherin alpha 1
hg19_v2_chr5_+_140306478_140306478	0.499574	GCUACAU	ENST00000253807.2|PCDHAC1|ENSG00000248383.3|protocadherin alpha subfamily C, 1
hg19_v2_chr6_+_17281573_17281605	0.465053	GCUACAU	ENST00000379052.5|RBM24|ENSG00000112183.10|RNA binding motif protein 24
hg19_v2_chr12_-_56652111_56652183	0.439701	GCUACAU	ENST00000267116.7|ANKRD52|ENSG00000139645.9|ankyrin repeat domain 52
hg19_v2_chr5_+_140345820_140345820	0.43502	GCUACAU	ENST00000289269.5|PCDHAC2|ENSG00000243232.3|protocadherin alpha subfamily C, 2
hg19_v2_chr16_+_69599861_69599887	0.43403	GCUACAU	ENST00000354436.2|NFAT5|ENSG00000102908.16|nuclear factor of activated T-cells 5, tonicity-responsive
hg19_v2_chr2_-_24149977_24150007	0.42544	GCUACAU	ENST00000238789.5|ATAD2B|ENSG00000119778.10|ATPase family, AAA domain containing 2B
hg19_v2_chr5_+_140261703_140261854	0.423727	GCUACAU	ENST00000409494.1|PCDHA13|ENSG00000239389.3|protocadherin alpha 13 	ENST00000289272.2|PCDHA13|ENSG00000239389.3|protocadherin alpha 13
hg19_v2_chr3_-_169530452_169530485	0.418977	GCUACAU	ENST00000446859.1|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34
hg19_v2_chr6_-_116381918_116381977	0.399516	GCUACAU	ENST00000606080.1|FRK|ENSG00000111816.6|fyn-related kinase
hg19_v2_chr16_+_22308717_22308764	0.389988	GCUACAU	ENST00000299853.5|POLR3E|ENSG00000058600.11|polymerase (RNA) III (DNA directed) polypeptide E (80kD) 	ENST00000564209.1|POLR3E|ENSG00000058600.11|polymerase (RNA) III (DNA directed) polypeptide E (80kD) 	ENST00000565358.1|POLR3E|ENSG00000058600.11|polymerase (RNA) III (DNA directed) polypeptide E (80kD) 	ENST00000418581.2|POLR3E|ENSG00000058600.11|polymerase (RNA) III (DNA directed) polypeptide E (80kD) 	ENST00000564883.1|POLR3E|ENSG00000058600.11|polymerase (RNA) III (DNA directed) polypeptide E (80kD) 	ENST00000359210.4|POLR3E|ENSG00000058600.11|polymerase (RNA) III (DNA directed) polypeptide E (80kD) 	ENST00000563024.1|POLR3E|ENSG00000058600.11|polymerase (RNA) III (DNA directed) polypeptide E (80kD)
hg19_v2_chr18_-_53255766_53255860	0.380549	GCUACAU	ENST00000566286.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000566279.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000354452.3|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000356073.4|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr2_-_160472952_160473080	0.365331	GCUACAU	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr5_+_140180635_140180783	0.360219	GCUACAU	ENST00000522353.2|PCDHA3|ENSG00000255408.2|protocadherin alpha 3 	ENST00000532566.2|PCDHA3|ENSG00000255408.2|protocadherin alpha 3
hg19_v2_chr2_-_152955537_152955593	0.348585	GCUACAU	ENST00000201943.5|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit 	ENST00000539935.1|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit
hg19_v2_chr5_+_140186647_140186773	0.334351	GCUACAU	ENST00000512229.2|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000356878.4|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000530339.1|PCDHA4|ENSG00000204967.6|protocadherin alpha 4
hg19_v2_chr4_+_72204755_72204778	0.329939	GCUACAU	ENST00000512686.1|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4 	ENST00000340595.3|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr17_-_27621125_27621143	0.329206	GCUACAU	ENST00000579665.1|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2 	ENST00000225388.4|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2
hg19_v2_chr5_+_140235469_140235634	0.316797	GCUACAU	ENST00000506939.2|PCDHA10|ENSG00000250120.2|protocadherin alpha 10 	ENST00000307360.5|PCDHA10|ENSG00000250120.2|protocadherin alpha 10
hg19_v2_chr4_+_184826418_184826522	0.316586	GCUACAU	ENST00000308497.4|STOX2|ENSG00000173320.5|storkhead box 2 	ENST00000438269.1|STOX2|ENSG00000173320.5|storkhead box 2
hg19_v2_chr10_+_120789223_120789231	0.314925	GCUACAU	ENST00000425699.1|NANOS1|ENSG00000188613.5|nanos homolog 1 (Drosophila)
hg19_v2_chr21_-_40685477_40685496	0.313866	GCUACAU	ENST00000342449.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr5_+_140207536_140207650	0.312314	GCUACAU	ENST00000529310.1|PCDHA6|ENSG00000081842.13|protocadherin alpha 6 	ENST00000527624.1|PCDHA6|ENSG00000081842.13|protocadherin alpha 6
hg19_v2_chr16_+_54964740_54964789	0.262284	GCUACAU	ENST00000394636.4|IRX5|ENSG00000176842.10|iroquois homeobox 5
hg19_v2_chr10_-_94003003_94003013	0.259719	GCUACAU	ENST00000412050.4|CPEB3|ENSG00000107864.10|cytoplasmic polyadenylation element binding protein 3
hg19_v2_chr6_-_111804393_111804436	0.255128	GCUACAU	ENST00000368802.3|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit 	ENST00000368805.1|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit
hg19_v2_chr16_-_30798492_30798535	0.243318	GCUACAU	ENST00000262525.4|ZNF629|ENSG00000102870.4|zinc finger protein 629
hg19_v2_chr9_-_114246635_114246676	0.240596	GCUACAU	ENST00000338205.5|KIAA0368|ENSG00000136813.10|KIAA0368
hg19_v2_chr1_-_204329013_204329086	0.237649	GCUACAU	ENST00000272203.3|PLEKHA6|ENSG00000143850.8|pleckstrin homology domain containing, family A member 6 	ENST00000414478.1|PLEKHA6|ENSG00000143850.8|pleckstrin homology domain containing, family A member 6
hg19_v2_chr20_+_33292068_33292164	0.229277	GCUACAU	ENST00000374810.3|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2 	ENST00000374809.2|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2 	ENST00000451665.1|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2
hg19_v2_chr1_-_10856694_10856715	0.225878	GCUACAU	ENST00000377022.3|CASZ1|ENSG00000130940.10|castor zinc finger 1 	ENST00000344008.5|CASZ1|ENSG00000130940.10|castor zinc finger 1
hg19_v2_chr5_+_56469775_56469837	0.21953	GCUACAU	ENST00000424459.3|GPBP1|ENSG00000062194.11|GC-rich promoter binding protein 1
hg19_v2_chr3_+_183353356_183353450	0.217768	GCUACAU	ENST00000242810.6|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000493074.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000437402.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454495.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000473045.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000468101.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000427201.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000482138.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454652.2|KLHL24|ENSG00000114796.11|kelch-like family member 24
hg19_v2_chr15_-_52970820_52970960	0.212479	GCUACAU	ENST00000261844.7|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A 	ENST00000399202.4|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A 	ENST00000562135.1|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A
hg19_v2_chr4_-_107957454_107957475	0.208847	GCUACAU	ENST00000285311.3|DKK2|ENSG00000155011.4|dickkopf WNT signaling pathway inhibitor 2
hg19_v2_chr6_-_16761678_16761721	0.208349	GCUACAU	ENST00000244769.4|ATXN1|ENSG00000124788.13|ataxin 1 	ENST00000436367.1|ATXN1|ENSG00000124788.13|ataxin 1
hg19_v2_chr12_+_6898638_6898669	0.204053	GCUACAU	ENST00000011653.4|CD4|ENSG00000010610.5|CD4 molecule
hg19_v2_chr1_+_63833261_63833282	0.195567	GCUACAU	ENST00000371108.4|ALG6|ENSG00000088035.11|ALG6, alpha-1,3-glucosyltransferase
hg19_v2_chr1_-_224033596_224033697	0.19462	GCUACAU	ENST00000391878.2|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2 	ENST00000343537.7|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2
hg19_v2_chr1_+_26438289_26438352	0.193236	GCUACAU	ENST00000374271.4|PDIK1L|ENSG00000175087.5|PDLIM1 interacting kinase 1 like 	ENST00000374269.1|PDIK1L|ENSG00000175087.5|PDLIM1 interacting kinase 1 like
hg19_v2_chr5_+_67511524_67511628	0.191341	GCUACAU	ENST00000521381.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha) 	ENST00000521657.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr16_-_66730583_66730689	0.190665	GCUACAU	ENST00000330687.4|CMTM4|ENSG00000183723.8|CKLF-like MARVEL transmembrane domain containing 4 	ENST00000394106.2|CMTM4|ENSG00000183723.8|CKLF-like MARVEL transmembrane domain containing 4 	ENST00000563952.1|CMTM4|ENSG00000183723.8|CKLF-like MARVEL transmembrane domain containing 4
hg19_v2_chr2_+_109335929_109336002	0.18301	GCUACAU	ENST00000283195.6|RANBP2|ENSG00000153201.11|RAN binding protein 2
hg19_v2_chr17_-_63557759_63557774	0.168904	GCUACAU	ENST00000307078.5|AXIN2|ENSG00000168646.8|axin 2
hg19_v2_chr3_-_135914615_135914701	0.165015	GCUACAU	ENST00000309993.2|MSL2|ENSG00000174579.3|male-specific lethal 2 homolog (Drosophila)
hg19_v2_chr1_+_222791417_222791455	0.164553	GCUACAU	ENST00000344922.5|MIA3|ENSG00000154305.12|melanoma inhibitory activity family, member 3 	ENST00000344441.6|MIA3|ENSG00000154305.12|melanoma inhibitory activity family, member 3 	ENST00000344507.1|MIA3|ENSG00000154305.12|melanoma inhibitory activity family, member 3
hg19_v2_chr1_+_24286287_24286326	0.161634	GCUACAU	ENST00000334351.7|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2 	ENST00000374468.1|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2
hg19_v2_chr12_+_56401268_56401443	0.156254	GCUACAU	ENST00000262032.5|IKZF4|ENSG00000123411.10|IKAROS family zinc finger 4 (Eos)
hg19_v2_chr3_+_169684553_169684616	0.155999	GCUACAU	ENST00000337002.4|SEC62|ENSG00000008952.12|SEC62 homolog (S. cerevisiae) 	ENST00000480708.1|SEC62|ENSG00000008952.12|SEC62 homolog (S. cerevisiae)
hg19_v2_chr5_-_175964366_175964429	0.149779	GCUACAU	ENST00000274811.4|RNF44|ENSG00000146083.7|ring finger protein 44
hg19_v2_chr9_-_123476719_123476810	0.149122	GCUACAU	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr11_-_94964354_94964374	0.147031	GCUACAU	ENST00000536441.1|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr4_-_69215699_69215815	0.146891	GCUACAU	ENST00000510746.1|YTHDC1|ENSG00000083896.8|YTH domain containing 1 	ENST00000344157.4|YTHDC1|ENSG00000083896.8|YTH domain containing 1 	ENST00000355665.3|YTHDC1|ENSG00000083896.8|YTH domain containing 1
hg19_v2_chr5_+_141488070_141488094	0.140488	GCUACAU	ENST00000253814.4|NDFIP1|ENSG00000131507.9|Nedd4 family interacting protein 1
hg19_v2_chr13_+_88324870_88324870	0.139203	GCUACAU	ENST00000325089.6|SLITRK5|ENSG00000165300.6|SLIT and NTRK-like family, member 5
hg19_v2_chr2_+_54951679_54951679	0.138855	GCUACAU	ENST00000356458.6|EML6|ENSG00000214595.7|echinoderm microtubule associated protein like 6
hg19_v2_chr16_-_73082274_73082274	0.1368	GCUACAU	ENST00000268489.5|ZFHX3|ENSG00000140836.10|zinc finger homeobox 3
hg19_v2_chr2_+_46926048_46926095	0.131529	GCUACAU	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr7_+_114055052_114055378	0.131127	GCUACAU	ENST00000462331.1|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000408937.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000403559.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000350908.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393498.2|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393495.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000378237.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393489.3|FOXP2|ENSG00000128573.18|forkhead box P2
hg19_v2_chr3_+_16926441_16926463	0.127455	GCUACAU	ENST00000418129.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2 	ENST00000396755.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2
hg19_v2_chr16_+_12070567_12070623	0.127426	GCUACAU	ENST00000566228.1|SNX29|ENSG00000048471.9|sorting nexin 29
hg19_v2_chr17_+_61627814_61627871	0.12476	GCUACAU	ENST00000310827.4|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7 	ENST00000431926.1|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7 	ENST00000415273.2|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7
hg19_v2_chr4_-_185395672_185395734	0.122349	GCUACAU	ENST00000393593.3|IRF2|ENSG00000168310.6|interferon regulatory factor 2
hg19_v2_chr17_-_27278304_27278408	0.119494	GCUACAU	ENST00000577226.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr4_+_159690218_159690290	0.119032	GCUACAU	ENST00000264433.6|FNIP2|ENSG00000052795.8|folliculin interacting protein 2
hg19_v2_chr3_-_11762202_11762226	0.117829	GCUACAU	ENST00000445411.1|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila) 	ENST00000404339.1|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila) 	ENST00000273038.3|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr5_-_56247935_56247959	0.112423	GCUACAU	ENST00000381199.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3 	ENST00000381226.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3 	ENST00000381213.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3
hg19_v2_chr8_+_61591337_61591393	0.111633	GCUACAU	ENST00000423902.2|CHD7|ENSG00000171316.7|chromodomain helicase DNA binding protein 7
hg19_v2_chr5_+_79703823_79703845	0.111627	GCUACAU	ENST00000338008.5|ZFYVE16|ENSG00000039319.12|zinc finger, FYVE domain containing 16 	ENST00000510158.1|ZFYVE16|ENSG00000039319.12|zinc finger, FYVE domain containing 16 	ENST00000505560.1|ZFYVE16|ENSG00000039319.12|zinc finger, FYVE domain containing 16
hg19_v2_chr1_-_157108130_157108173	0.111477	GCUACAU	ENST00000368192.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr1_+_220701456_220701574	0.111125	GCUACAU	ENST00000366918.4|MARK1|ENSG00000116141.11|MAP/microtubule affinity-regulating kinase 1 	ENST00000402574.1|MARK1|ENSG00000116141.11|MAP/microtubule affinity-regulating kinase 1
hg19_v2_chr12_+_69864129_69864222	0.109959	GCUACAU	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr16_+_67596310_67596353	0.107532	GCUACAU	ENST00000264010.4|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein) 	ENST00000401394.1|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein)
hg19_v2_chr15_+_57210818_57210930	0.0982365	GCUACAU	ENST00000438423.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000267811.5|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000452095.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000559609.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000333725.5|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr4_-_83719983_83720085	0.0981704	GCUACAU	ENST00000319540.4|SCD5|ENSG00000145284.7|stearoyl-CoA desaturase 5
hg19_v2_chr19_+_1249869_1249894	0.096657	GCUACAU	ENST00000591446.2|MIDN|ENSG00000167470.8|midnolin
hg19_v2_chr10_-_99094458_99094500	0.0950025	GCUACAU	ENST00000371019.2|FRAT2|ENSG00000181274.5|frequently rearranged in advanced T-cell lymphomas 2
hg19_v2_chr20_-_50159198_50159299	0.0941764	GCUACAU	ENST00000371564.3|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 	ENST00000396009.3|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 	ENST00000610033.1|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
hg19_v2_chr16_+_22019404_22019604	0.091295	GCUACAU	ENST00000542527.2|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52 	ENST00000569656.1|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52 	ENST00000562695.1|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52
hg19_v2_chr10_+_121652204_121652286	0.08991	GCUACAU	ENST00000369075.3|SEC23IP|ENSG00000107651.8|SEC23 interacting protein 	ENST00000543134.1|SEC23IP|ENSG00000107651.8|SEC23 interacting protein
hg19_v2_chr17_+_36861735_36861795	0.0878879	GCUACAU	ENST00000378137.5|MLLT6|ENSG00000108292.12|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 	ENST00000325718.7|MLLT6|ENSG00000108292.12|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
hg19_v2_chr2_-_68479614_68479685	0.0839665	GCUACAU	ENST00000234310.3|PPP3R1|ENSG00000221823.6|protein phosphatase 3, regulatory subunit B, alpha
hg19_v2_chr8_-_116681221_116681236	0.0828911	GCUACAU	ENST00000395715.3|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr8_+_28747884_28747938	0.0813825	GCUACAU	ENST00000287701.10|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000444075.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000403668.2|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000519662.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000558662.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000523613.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000560599.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000397358.3|HMBOX1|ENSG00000147421.13|homeobox containing 1
hg19_v2_chr19_+_13906250_13906274	0.0804184	GCUACAU	ENST00000254323.2|ZSWIM4|ENSG00000132003.5|zinc finger, SWIM-type containing 4
hg19_v2_chr12_+_41831485_41831555	0.0797973	GCUACAU	ENST00000539469.2|PDZRN4|ENSG00000165966.10|PDZ domain containing ring finger 4 	ENST00000298919.7|PDZRN4|ENSG00000165966.10|PDZ domain containing ring finger 4
hg19_v2_chr4_-_89619386_89619386	0.0796409	GCUACAU	ENST00000323061.5|NAP1L5|ENSG00000177432.6|nucleosome assembly protein 1-like 5
hg19_v2_chr12_+_62860581_62860629	0.0763933	GCUACAU	ENST00000393632.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393630.3|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000280379.6|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000546600.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552738.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393629.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552115.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae)
hg19_v2_chr4_-_55991752_55991770	0.0742367	GCUACAU	ENST00000263923.4|KDR|ENSG00000128052.8|kinase insert domain receptor (a type III receptor tyrosine kinase)
hg19_v2_chr9_+_96338860_96338939	0.0734257	GCUACAU	ENST00000375376.4|PHF2|ENSG00000197724.6|PHD finger protein 2
hg19_v2_chr11_+_9406169_9406210	0.0724329	GCUACAU	ENST00000379719.3|IPO7|ENSG00000205339.5|importin 7 	ENST00000527431.1|IPO7|ENSG00000205339.5|importin 7
hg19_v2_chr12_+_56473628_56473680	0.0710071	GCUACAU	ENST00000549282.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000549061.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000267101.3|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3
hg19_v2_chr17_-_58603568_58603610	0.0701682	GCUACAU	ENST00000083182.3|APPBP2|ENSG00000062725.5|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
hg19_v2_chr12_+_67663056_67663067	0.0694381	GCUACAU	ENST00000545606.1|CAND1|ENSG00000111530.8|cullin-associated and neddylation-dissociated 1
hg19_v2_chr11_+_100558384_100558407	0.0682318	GCUACAU	ENST00000524892.2|ARHGAP42|ENSG00000165895.13|Rho GTPase activating protein 42 	ENST00000298815.8|ARHGAP42|ENSG00000165895.13|Rho GTPase activating protein 42
hg19_v2_chr5_-_38595498_38595514	0.0657371	GCUACAU	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr18_+_46065393_46065444	0.0649785	GCUACAU	ENST00000256413.3|CTIF|ENSG00000134030.9|CBP80/20-dependent translation initiation factor
hg19_v2_chr1_-_89357179_89357301	0.0645249	GCUACAU	ENST00000448623.1|GTF2B|ENSG00000137947.7|general transcription factor IIB 	ENST00000418217.1|GTF2B|ENSG00000137947.7|general transcription factor IIB 	ENST00000370500.5|GTF2B|ENSG00000137947.7|general transcription factor IIB
hg19_v2_chrX_+_105066524_105066552	0.0638516	GCUACAU	ENST00000243300.9|NRK|ENSG00000123572.12|Nik related kinase 	ENST00000428173.2|NRK|ENSG00000123572.12|Nik related kinase
hg19_v2_chr3_-_184870751_184870872	0.0625357	GCUACAU	ENST00000335012.2|C3orf70|ENSG00000187068.2|chromosome 3 open reading frame 70
hg19_v2_chr4_+_144434584_144434709	0.0620723	GCUACAU	ENST00000283131.3|SMARCA5|ENSG00000153147.5|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
hg19_v2_chr6_-_86352642_86352709	0.0619847	GCUACAU	ENST00000355238.6|SYNCRIP|ENSG00000135316.13|synaptotagmin binding, cytoplasmic RNA interacting protein
hg19_v2_chr2_+_60983361_60983418	0.0578049	GCUACAU	ENST00000238714.3|PAPOLG|ENSG00000115421.8|poly(A) polymerase gamma
hg19_v2_chr2_-_100106419_100106522	0.0565544	GCUACAU	ENST00000393445.3|REV1|ENSG00000135945.5|REV1, polymerase (DNA directed) 	ENST00000258428.3|REV1|ENSG00000135945.5|REV1, polymerase (DNA directed)
hg19_v2_chr8_-_65711310_65711324	0.0549754	GCUACAU	ENST00000310193.3|CYP7B1|ENSG00000172817.3|cytochrome P450, family 7, subfamily B, polypeptide 1
hg19_v2_chr10_+_1095416_1095482	0.0534936	GCUACAU	ENST00000358220.1|WDR37|ENSG00000047056.10|WD repeat domain 37
hg19_v2_chr2_+_111878483_111878506	0.0526769	GCUACAU	ENST00000308659.8|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator) 	ENST00000357757.2|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator) 	ENST00000393253.2|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator) 	ENST00000337565.5|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator) 	ENST00000393256.3|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator)
hg19_v2_chr17_-_3794021_3794042	0.0522379	GCUACAU	ENST00000381769.2|CAMKK1|ENSG00000004660.10|calcium/calmodulin-dependent protein kinase kinase 1, alpha
hg19_v2_chr11_+_33278811_33279133	0.0511501	GCUACAU	ENST00000303296.4|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3 	ENST00000379016.3|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3
hg19_v2_chr15_+_90808919_90808937	0.0497527	GCUACAU	ENST00000379095.3|NGRN|ENSG00000182768.7|neugrin, neurite outgrowth associated
hg19_v2_chr10_+_114709999_114710031	0.0493332	GCUACAU	ENST00000355995.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000545257.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000543371.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000536810.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000355717.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000538897.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000534894.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr6_+_37225540_37225558	0.0493162	GCUACAU	ENST00000373491.3|TBC1D22B|ENSG00000065491.8|TBC1 domain family, member 22B
hg19_v2_chr17_-_74733404_74733456	0.0476516	GCUACAU	ENST00000508921.3|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2 	ENST00000583836.1|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2 	ENST00000358156.6|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2 	ENST00000392485.2|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2 	ENST00000359995.5|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2
hg19_v2_chr12_-_56224546_56224608	0.0471896	GCUACAU	ENST00000357606.3|DNAJC14|ENSG00000135392.11|DnaJ (Hsp40) homolog, subfamily C, member 14 	ENST00000547445.1|DNAJC14|ENSG00000135392.11|DnaJ (Hsp40) homolog, subfamily C, member 14
hg19_v2_chr13_+_49550015_49550070	0.0470676	GCUACAU	ENST00000492622.2|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr20_+_56964169_56964182	0.0466482	GCUACAU	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr9_+_103790991_103791001	0.044381	GCUACAU	ENST00000374874.3|LPPR1|ENSG00000148123.10|Lipid phosphate phosphatase-related protein type 1
hg19_v2_chr1_-_207224307_207224422	0.0434136	GCUACAU	ENST00000315927.4|YOD1|ENSG00000180667.6|YOD1 deubiquitinase
hg19_v2_chr5_+_140174429_140174550	0.0434074	GCUACAU	ENST00000520672.2|PCDHA2|ENSG00000204969.5|protocadherin alpha 2 	ENST00000378132.1|PCDHA2|ENSG00000204969.5|protocadherin alpha 2 	ENST00000526136.1|PCDHA2|ENSG00000204969.5|protocadherin alpha 2
hg19_v2_chr15_+_44719394_44719579	0.0431787	GCUACAU	ENST00000260327.4|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 	ENST00000396780.1|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
hg19_v2_chr12_+_94542459_94542513	0.0431473	GCUACAU	ENST00000258526.4|PLXNC1|ENSG00000136040.4|plexin C1
hg19_v2_chr5_+_138678131_138678169	0.04265	GCUACAU	ENST00000394795.2|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000510080.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr5_+_140201183_140201361	0.0422276	GCUACAU	ENST00000529619.1|PCDHA5|ENSG00000204965.4|protocadherin alpha 5 	ENST00000529859.1|PCDHA5|ENSG00000204965.4|protocadherin alpha 5 	ENST00000378126.3|PCDHA5|ENSG00000204965.4|protocadherin alpha 5
hg19_v2_chr5_-_133512683_133512729	0.0421059	GCUACAU	ENST00000353411.6|SKP1|ENSG00000113558.14|S-phase kinase-associated protein 1
hg19_v2_chr8_-_52811640_52811696	0.0406655	GCUACAU	ENST00000360540.5|PCMTD1|ENSG00000168300.9|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 	ENST00000521344.1|PCMTD1|ENSG00000168300.9|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
hg19_v2_chr12_-_104532062_104532071	0.0397962	GCUACAU	ENST00000240055.3|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr1_+_97187318_97187380	0.0392043	GCUACAU	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr5_-_137090028_137090075	0.037988	GCUACAU	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr7_+_107110488_107110515	0.0348933	GCUACAU	ENST00000304402.4|GPR22|ENSG00000172209.4|G protein-coupled receptor 22
hg19_v2_chr10_+_22610124_22610188	0.0330875	GCUACAU	ENST00000376663.3|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chr7_+_77325738_77325789	0.0323533	GCUACAU	ENST00000334955.8|RSBN1L|ENSG00000187257.10|round spermatid basic protein 1-like
hg19_v2_chrX_+_23352133_23352229	0.0314425	GCUACAU	ENST00000379361.4|PTCHD1|ENSG00000165186.9|patched domain containing 1
hg19_v2_chr1_-_24306798_24306828	0.0309473	GCUACAU	ENST00000374452.5|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000492112.2|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000343255.5|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000344989.6|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10
hg19_v2_chr3_-_107809816_107809885	0.0306596	GCUACAU	ENST00000361309.5|CD47|ENSG00000196776.10|CD47 molecule 	ENST00000355354.7|CD47|ENSG00000196776.10|CD47 molecule
hg19_v2_chr13_+_20532807_20532841	0.0303448	GCUACAU	ENST00000382869.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2 	ENST00000382881.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr12_+_70636765_70636817	0.0300558	GCUACAU	ENST00000552231.1|CNOT2|ENSG00000111596.7|CCR4-NOT transcription complex, subunit 2 	ENST00000229195.3|CNOT2|ENSG00000111596.7|CCR4-NOT transcription complex, subunit 2 	ENST00000547780.1|CNOT2|ENSG00000111596.7|CCR4-NOT transcription complex, subunit 2 	ENST00000418359.3|CNOT2|ENSG00000111596.7|CCR4-NOT transcription complex, subunit 2
hg19_v2_chr16_+_68119440_68119561	0.0287881	GCUACAU	ENST00000346183.3|NFATC3|ENSG00000072736.14|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 	ENST00000329524.4|NFATC3|ENSG00000072736.14|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
hg19_v2_chr13_+_53226963_53227023	0.0287376	GCUACAU	ENST00000343788.6|SUGT1|ENSG00000165416.10|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) 	ENST00000535397.1|SUGT1|ENSG00000165416.10|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) 	ENST00000310528.8|SUGT1|ENSG00000165416.10|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)
hg19_v2_chr5_+_139493665_139493718	0.0280112	GCUACAU	ENST00000331327.3|PURA|ENSG00000185129.4|purine-rich element binding protein A
hg19_v2_chr18_+_6834472_6834495	0.0277508	GCUACAU	ENST00000581099.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000419673.2|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000531294.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr22_-_38380543_38380569	0.0270519	GCUACAU	ENST00000396884.2|SOX10|ENSG00000100146.12|SRY (sex determining region Y)-box 10
hg19_v2_chr1_-_205601064_205601090	0.0269954	GCUACAU	ENST00000357992.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1) 	ENST00000289703.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1)
hg19_v2_chr10_+_73975742_73975830	0.0258717	GCUACAU	ENST00000299381.4|ANAPC16|ENSG00000166295.4|anaphase promoting complex subunit 16
hg19_v2_chr22_+_21213259_21213271	0.0258214	GCUACAU	ENST00000215730.7|SNAP29|ENSG00000099940.7|synaptosomal-associated protein, 29kDa
hg19_v2_chr6_-_62996066_62996137	0.0250228	GCUACAU	ENST00000281156.4|KHDRBS2|ENSG00000112232.8|KH domain containing, RNA binding, signal transduction associated 2
hg19_v2_chr4_+_48343339_48343414	0.0242351	GCUACAU	ENST00000264313.6|SLAIN2|ENSG00000109171.10|SLAIN motif family, member 2
hg19_v2_chr14_+_105781048_105781101	0.0241996	GCUACAU	ENST00000458164.2|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2 	ENST00000447393.1|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2
hg19_v2_chr10_+_22605304_22605372	0.0228533	GCUACAU	ENST00000475460.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000602390.1|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000456711.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000444869.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000489125.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough
hg19_v2_chr18_-_61034743_61034768	0.0228362	GCUACAU	ENST00000406396.3|KDSR|ENSG00000119537.11|3-ketodihydrosphingosine reductase
hg19_v2_chr2_+_208394616_208394655	0.021998	GCUACAU	ENST00000432329.2|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1 	ENST00000353267.3|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1 	ENST00000445803.1|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1
hg19_v2_chr9_-_129885010_129885162	0.0208129	GCUACAU	ENST00000373425.3|ANGPTL2|ENSG00000136859.5|angiopoietin-like 2
hg19_v2_chr14_-_36278412_36278437	0.0200399	GCUACAU	ENST00000389698.3|RALGAPA1|ENSG00000174373.11|Ral GTPase activating protein, alpha subunit 1 (catalytic) 	ENST00000258840.6|RALGAPA1|ENSG00000174373.11|Ral GTPase activating protein, alpha subunit 1 (catalytic)
hg19_v2_chr11_+_109292846_109292875	0.0190591	GCUACAU	ENST00000327419.6|C11orf87|ENSG00000185742.6|chromosome 11 open reading frame 87
hg19_v2_chr14_+_77228532_77228672	0.0183902	GCUACAU	ENST00000167106.4|VASH1|ENSG00000071246.6|vasohibin 1 	ENST00000554237.1|VASH1|ENSG00000071246.6|vasohibin 1
hg19_v2_chr15_+_44829255_44829331	0.0183107	GCUACAU	ENST00000261868.5|EIF3J|ENSG00000104131.8|eukaryotic translation initiation factor 3, subunit J 	ENST00000424492.3|EIF3J|ENSG00000104131.8|eukaryotic translation initiation factor 3, subunit J
hg19_v2_chr5_-_176057365_176057517	0.0181288	GCUACAU	ENST00000310112.3|SNCB|ENSG00000074317.6|synuclein, beta
hg19_v2_chr12_+_113229737_113229821	0.0175456	GCUACAU	ENST00000551052.1|RPH3A|ENSG00000089169.10|rabphilin 3A homolog (mouse) 	ENST00000415485.3|RPH3A|ENSG00000089169.10|rabphilin 3A homolog (mouse)
hg19_v2_chr9_-_127952032_127952098	0.0174019	GCUACAU	ENST00000456642.1|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373546.3|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373547.4|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit
hg19_v2_chr1_+_46805832_46805874	0.0145154	GCUACAU	ENST00000474844.1|NSUN4|ENSG00000117481.6|NOP2/Sun domain family, member 4
hg19_v2_chr1_+_215256467_215256622	0.0113158	GCUACAU	ENST00000391894.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2 	ENST00000444842.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2
hg19_v2_chr16_-_31021921_31022044	0.011158	GCUACAU	ENST00000215095.5|STX1B|ENSG00000099365.5|syntaxin 1B
hg19_v2_chr3_-_167452614_167452697	0.0103714	GCUACAU	ENST00000392750.2|PDCD10|ENSG00000114209.10|programmed cell death 10 	ENST00000464360.1|PDCD10|ENSG00000114209.10|programmed cell death 10 	ENST00000492139.1|PDCD10|ENSG00000114209.10|programmed cell death 10 	ENST00000471885.1|PDCD10|ENSG00000114209.10|programmed cell death 10 	ENST00000470131.1|PDCD10|ENSG00000114209.10|programmed cell death 10
hg19_v2_chrX_-_72434628_72434722	0.00993267	GCUACAU	ENST00000536638.1|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2 	ENST00000373517.3|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2
hg19_v2_chr4_+_699537_699600	0.00927612	GCUACAU	ENST00000419774.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000362003.5|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000400151.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000427463.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000470161.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr18_-_72921303_72921339	0.00916275	GCUACAU	ENST00000322342.3|ZADH2|ENSG00000180011.6|zinc binding alcohol dehydrogenase domain containing 2
hg19_v2_chr17_-_37607497_37607539	0.00841524	GCUACAU	ENST00000394287.3|MED1|ENSG00000125686.7|mediator complex subunit 1 	ENST00000300651.6|MED1|ENSG00000125686.7|mediator complex subunit 1
hg19_v2_chr14_-_21905395_21905419	0.00811653	GCUACAU	ENST00000430710.3|CHD8|ENSG00000100888.8|chromodomain helicase DNA binding protein 8 	ENST00000553283.1|CHD8|ENSG00000100888.8|chromodomain helicase DNA binding protein 8
hg19_v2_chr2_+_148778570_148778589	0.00778263	GCUACAU	ENST00000407073.1|MBD5|ENSG00000204406.7|methyl-CpG binding domain protein 5
hg19_v2_chr17_+_27717415_27717618	0.0066208	GCUACAU	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr9_+_36036430_36036430	0.00625883	GCUACAU	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chr2_+_42275153_42275171	0.00474852	GCUACAU	ENST00000294964.5|PKDCC|ENSG00000162878.8|protein kinase domain containing, cytoplasmic
hg19_v2_chr8_+_58907104_58907131	0.00181314	GCUACAU	ENST00000361488.3|FAM110B|ENSG00000169122.7|family with sequence similarity 110, member B
hg19_v2_chr19_+_30433110_30433214	0.00154357	GCUACAU	ENST00000542441.2|URI1|ENSG00000105176.13|URI1, prefoldin-like chaperone 	ENST00000392271.1|URI1|ENSG00000105176.13|URI1, prefoldin-like chaperone
hg19_v2_chr17_+_41177220_41177282	0.00142061	GCUACAU	ENST00000587250.2|RND2|ENSG00000108830.7|Rho family GTPase 2 	ENST00000544533.1|RND2|ENSG00000108830.7|Rho family GTPase 2
hg19_v2_chr2_-_65357225_65357267	0.00133587	GCUACAU	ENST00000398529.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409751.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000356214.7|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409892.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409784.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family
hg19_v2_chr14_-_27066636_27066701	0.00109401	GCUACAU	ENST00000267422.7|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000344429.5|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000574031.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000465357.2|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000547619.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1
