hg19_v2_chr6_+_17281573_17281605	0.915736	GAGAUGA	ENST00000379052.5|RBM24|ENSG00000112183.10|RNA binding motif protein 24
hg19_v2_chr5_-_100238956_100238994	0.847209	GAGAUGA	ENST00000231461.5|ST8SIA4|ENSG00000113532.8|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
hg19_v2_chr17_+_55333876_55333939	0.781052	GAGAUGA	ENST00000284073.2|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chr6_-_132272504_132272519	0.525966	GAGAUGA	ENST00000367976.3|CTGF|ENSG00000118523.5|connective tissue growth factor
hg19_v2_chr1_+_87794150_87794172	0.491834	GAGAUGA	ENST00000370544.5|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr2_-_217560248_217560278	0.423794	GAGAUGA	ENST00000233813.4|IGFBP5|ENSG00000115461.4|insulin-like growth factor binding protein 5
hg19_v2_chr7_-_131241361_131241398	0.367644	GAGAUGA	ENST00000378555.3|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000322985.9|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000541194.1|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000537928.1|PODXL|ENSG00000128567.12|podocalyxin-like
hg19_v2_chr5_+_142149955_142150000	0.318187	GAGAUGA	ENST00000378004.3|ARHGAP26|ENSG00000145819.11|Rho GTPase activating protein 26
hg19_v2_chr3_+_72937182_72937270	0.284524	GAGAUGA	ENST00000389617.4|GXYLT2|ENSG00000172986.8|glucoside xylosyltransferase 2
hg19_v2_chr15_-_49338748_49338765	0.225411	GAGAUGA	ENST00000559471.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr10_+_70320413_70320413	0.224396	GAGAUGA	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr2_+_45878790_45878913	0.210988	GAGAUGA	ENST00000306156.3|PRKCE|ENSG00000171132.9|protein kinase C, epsilon
hg19_v2_chr6_-_46138676_46138726	0.197715	GAGAUGA	ENST00000371383.2|ENPP5|ENSG00000112796.5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 	ENST00000230565.3|ENPP5|ENSG00000112796.5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)
hg19_v2_chr12_-_65146636_65146651	0.193328	GAGAUGA	ENST00000418919.2|GNS|ENSG00000135677.6|glucosamine (N-acetyl)-6-sulfatase
hg19_v2_chr3_+_97483366_97483422	0.192327	GAGAUGA	ENST00000463745.1|ARL6|ENSG00000113966.5|ADP-ribosylation factor-like 6 	ENST00000462412.1|ARL6|ENSG00000113966.5|ADP-ribosylation factor-like 6
hg19_v2_chr17_+_14204389_14204416	0.188954	GAGAUGA	ENST00000360954.2|HS3ST3B1|ENSG00000125430.4|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
hg19_v2_chr1_+_64936428_64936475	0.18755	GAGAUGA	ENST00000371073.2|CACHD1|ENSG00000158966.9|cache domain containing 1 	ENST00000290039.5|CACHD1|ENSG00000158966.9|cache domain containing 1
hg19_v2_chr3_-_37034702_37034795	0.180922	GAGAUGA	ENST00000322716.5|EPM2AIP1|ENSG00000178567.5|EPM2A (laforin) interacting protein 1
hg19_v2_chr13_+_48807288_48807302	0.179935	GAGAUGA	ENST00000378565.5|ITM2B|ENSG00000136156.8|integral membrane protein 2B
hg19_v2_chr2_+_97481974_97482015	0.172406	GAGAUGA	ENST00000377060.3|CNNM3|ENSG00000168763.11|cyclin M3 	ENST00000305510.3|CNNM3|ENSG00000168763.11|cyclin M3
hg19_v2_chr11_-_130184555_130184581	0.167904	GAGAUGA	ENST00000525842.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr4_+_184826418_184826522	0.166933	GAGAUGA	ENST00000308497.4|STOX2|ENSG00000173320.5|storkhead box 2 	ENST00000438269.1|STOX2|ENSG00000173320.5|storkhead box 2
hg19_v2_chr2_+_233562015_233562062	0.165204	GAGAUGA	ENST00000427233.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000373566.3|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000373563.4|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000428883.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000456491.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000409480.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000421433.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000425040.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000430720.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000409547.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000423659.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000409196.3|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000409451.3|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000429187.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000440945.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2
hg19_v2_chr12_+_8234807_8234855	0.158947	GAGAUGA	ENST00000339754.5|NECAP1|ENSG00000089818.12|NECAP endocytosis associated 1
hg19_v2_chr11_+_113930291_113930339	0.148417	GAGAUGA	ENST00000335953.4|ZBTB16|ENSG00000109906.9|zinc finger and BTB domain containing 16
hg19_v2_chr4_-_53525406_53525502	0.143869	GAGAUGA	ENST00000451218.2|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46 	ENST00000441222.3|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46
hg19_v2_chr1_-_57045228_57045242	0.139785	GAGAUGA	ENST00000371250.3|PPAP2B|ENSG00000162407.8|phosphatidic acid phosphatase type 2B
hg19_v2_chr12_+_11802753_11802834	0.135591	GAGAUGA	ENST00000396373.4|ETV6|ENSG00000139083.6|ets variant 6
hg19_v2_chr14_-_96830207_96830207	0.131924	GAGAUGA	ENST00000359933.4|ATG2B|ENSG00000066739.7|autophagy related 2B
hg19_v2_chr1_-_217262969_217262995	0.13005	GAGAUGA	ENST00000361525.3|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr9_-_20622478_20622542	0.127442	GAGAUGA	ENST00000355930.6|MLLT3|ENSG00000171843.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 	ENST00000380338.4|MLLT3|ENSG00000171843.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
hg19_v2_chr18_+_9136758_9136852	0.122701	GAGAUGA	ENST00000383440.2|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000262126.4|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000577992.1|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12
hg19_v2_chr11_-_73309228_73309257	0.120849	GAGAUGA	ENST00000356467.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A 	ENST00000064778.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A
hg19_v2_chr16_+_66400533_66400545	0.116181	GAGAUGA	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr5_+_145583156_145583180	0.109234	GAGAUGA	ENST00000265271.5|RBM27|ENSG00000091009.6|RNA binding motif protein 27
hg19_v2_chr12_+_56473628_56473680	0.107751	GAGAUGA	ENST00000549282.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000549061.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000267101.3|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3
hg19_v2_chr6_+_32709119_32709175	0.1071	GAGAUGA	ENST00000374940.3|HLA-DQA2|ENSG00000237541.3|major histocompatibility complex, class II, DQ alpha 2
hg19_v2_chr12_+_12764773_12764852	0.10529	GAGAUGA	ENST00000228865.2|CREBL2|ENSG00000111269.2|cAMP responsive element binding protein-like 2
hg19_v2_chrX_+_69664706_69664819	0.105266	GAGAUGA	ENST00000194900.4|DLG3|ENSG00000082458.7|discs, large homolog 3 (Drosophila) 	ENST00000374360.3|DLG3|ENSG00000082458.7|discs, large homolog 3 (Drosophila)
hg19_v2_chr5_-_38595498_38595514	0.0995882	GAGAUGA	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr17_+_47865917_47866068	0.0972526	GAGAUGA	ENST00000259021.4|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000454930.2|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000509773.1|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000510819.1|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000424009.2|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7
hg19_v2_chr20_+_30865429_30865480	0.0965907	GAGAUGA	ENST00000375712.3|KIF3B|ENSG00000101350.6|kinesin family member 3B
hg19_v2_chr1_+_89990431_89990493	0.0918981	GAGAUGA	ENST00000330947.2|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B 	ENST00000358200.4|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr18_-_54305658_54305876	0.090335	GAGAUGA	ENST00000586262.1|TXNL1|ENSG00000091164.8|thioredoxin-like 1 	ENST00000217515.6|TXNL1|ENSG00000091164.8|thioredoxin-like 1
hg19_v2_chr15_+_44719394_44719579	0.0860012	GAGAUGA	ENST00000260327.4|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 	ENST00000396780.1|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
hg19_v2_chr6_+_107811162_107811196	0.0842663	GAGAUGA	ENST00000317357.5|SOBP|ENSG00000112320.7|sine oculis binding protein homolog (Drosophila)
hg19_v2_chr18_-_29522989_29523104	0.0838839	GAGAUGA	ENST00000582539.1|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8 	ENST00000283351.4|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8 	ENST00000582513.1|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8
hg19_v2_chr6_-_99963252_99963264	0.0825984	GAGAUGA	ENST00000392738.2|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45 	ENST00000327681.6|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45 	ENST00000472914.2|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45
hg19_v2_chr11_-_79151695_79151710	0.0797637	GAGAUGA	ENST00000278550.7|TENM4|ENSG00000149256.10|teneurin transmembrane protein 4
hg19_v2_chr16_+_70148230_70148275	0.0766885	GAGAUGA	ENST00000398122.3|PDPR|ENSG00000090857.9|pyruvate dehydrogenase phosphatase regulatory subunit 	ENST00000568530.1|PDPR|ENSG00000090857.9|pyruvate dehydrogenase phosphatase regulatory subunit
hg19_v2_chr7_-_47621736_47621747	0.0723187	GAGAUGA	ENST00000311160.9|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr3_+_113465866_113465925	0.0714349	GAGAUGA	ENST00000273398.3|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 	ENST00000538620.1|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 	ENST00000496747.1|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 	ENST00000475322.1|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A
hg19_v2_chr9_+_79074068_79074150	0.0680294	GAGAUGA	ENST00000444201.2|GCNT1|ENSG00000187210.8|glucosaminyl (N-acetyl) transferase 1, core 2 	ENST00000376730.4|GCNT1|ENSG00000187210.8|glucosaminyl (N-acetyl) transferase 1, core 2
hg19_v2_chr6_+_32936353_32936437	0.0677939	GAGAUGA	ENST00000374825.4|BRD2|ENSG00000204256.8|bromodomain containing 2
hg19_v2_chr20_+_2673383_2673525	0.0657248	GAGAUGA	ENST00000380648.4|EBF4|ENSG00000088881.16|early B-cell factor 4 	ENST00000342725.5|EBF4|ENSG00000088881.16|early B-cell factor 4
hg19_v2_chr17_-_47841485_47841529	0.0654097	GAGAUGA	ENST00000506156.1|FAM117A|ENSG00000121104.3|family with sequence similarity 117, member A 	ENST00000240364.2|FAM117A|ENSG00000121104.3|family with sequence similarity 117, member A
hg19_v2_chr1_+_62208091_62208182	0.0649466	GAGAUGA	ENST00000316485.6|INADL|ENSG00000132849.14|InaD-like (Drosophila) 	ENST00000371158.2|INADL|ENSG00000132849.14|InaD-like (Drosophila)
hg19_v2_chr8_+_117963190_117963224	0.0644111	GAGAUGA	ENST00000427715.2|SLC30A8|ENSG00000164756.8|solute carrier family 30 (zinc transporter), member 8
hg19_v2_chr19_+_18942720_18942748	0.0624973	GAGAUGA	ENST00000262803.5|UPF1|ENSG00000005007.8|UPF1 regulator of nonsense transcripts homolog (yeast)
hg19_v2_chr12_-_49449107_49449107	0.0614263	GAGAUGA	ENST00000301067.7|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr9_+_130830451_130830572	0.0579236	GAGAUGA	ENST00000373068.2|SLC25A25|ENSG00000148339.8|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 	ENST00000373069.5|SLC25A25|ENSG00000148339.8|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25
hg19_v2_chr10_+_111767720_111767752	0.0562946	GAGAUGA	ENST00000356080.4|ADD3|ENSG00000148700.9|adducin 3 (gamma) 	ENST00000277900.8|ADD3|ENSG00000148700.9|adducin 3 (gamma)
hg19_v2_chr20_-_40247133_40247194	0.054857	GAGAUGA	ENST00000373233.3|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6 	ENST00000309279.7|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6
hg19_v2_chr3_-_114790179_114790222	0.0515351	GAGAUGA	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr20_-_62284766_62284785	0.0514622	GAGAUGA	ENST00000370053.1|STMN3|ENSG00000197457.5|stathmin-like 3
hg19_v2_chr1_+_160370344_160370406	0.0509477	GAGAUGA	ENST00000368061.2|VANGL2|ENSG00000162738.5|VANGL planar cell polarity protein 2
hg19_v2_chr2_+_181845298_181845378	0.0498717	GAGAUGA	ENST00000410062.4|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr13_+_73632897_73632930	0.0490186	GAGAUGA	ENST00000377687.4|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr12_-_42538657_42538720	0.0469697	GAGAUGA	ENST00000398675.3|GXYLT1|ENSG00000151233.6|glucoside xylosyltransferase 1
hg19_v2_chr6_+_155054459_155054561	0.0467245	GAGAUGA	ENST00000367178.3|SCAF8|ENSG00000213079.5|SR-related CTD-associated factor 8 	ENST00000417268.1|SCAF8|ENSG00000213079.5|SR-related CTD-associated factor 8 	ENST00000367186.4|SCAF8|ENSG00000213079.5|SR-related CTD-associated factor 8
hg19_v2_chr9_-_74525658_74525658	0.0460755	GAGAUGA	ENST00000333421.6|ABHD17B|ENSG00000107362.9|abhydrolase domain containing 17B
hg19_v2_chr1_-_40137710_40137824	0.0456906	GAGAUGA	ENST00000235628.1|NT5C1A|ENSG00000116981.3|5'-nucleotidase, cytosolic IA
hg19_v2_chr20_+_56964169_56964182	0.0450771	GAGAUGA	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr2_-_85839146_85839198	0.0448539	GAGAUGA	ENST00000306336.5|C2orf68|ENSG00000168887.6|chromosome 2 open reading frame 68 	ENST00000409734.3|C2orf68|ENSG00000168887.6|chromosome 2 open reading frame 68
hg19_v2_chr5_-_154317740_154317787	0.0436327	GAGAUGA	ENST00000285873.7|GEMIN5|ENSG00000082516.8|gem (nuclear organelle) associated protein 5
hg19_v2_chr20_-_50159198_50159299	0.0431045	GAGAUGA	ENST00000371564.3|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 	ENST00000396009.3|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 	ENST00000610033.1|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
hg19_v2_chr12_+_69864129_69864222	0.0417601	GAGAUGA	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr17_+_65821780_65821826	0.0416708	GAGAUGA	ENST00000321892.4|BPTF|ENSG00000171634.12|bromodomain PHD finger transcription factor 	ENST00000335221.5|BPTF|ENSG00000171634.12|bromodomain PHD finger transcription factor 	ENST00000306378.6|BPTF|ENSG00000171634.12|bromodomain PHD finger transcription factor
hg19_v2_chr11_-_118661828_118661886	0.0412692	GAGAUGA	ENST00000264018.4|DDX6|ENSG00000110367.7|DEAD (Asp-Glu-Ala-Asp) box helicase 6
hg19_v2_chr9_-_123476719_123476810	0.0410619	GAGAUGA	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr5_+_141303373_141303421	0.0391047	GAGAUGA	ENST00000432126.2|KIAA0141|ENSG00000081791.4|KIAA0141 	ENST00000194118.4|KIAA0141|ENSG00000081791.4|KIAA0141
hg19_v2_chr11_-_77532050_77532066	0.0375174	GAGAUGA	ENST00000308488.6|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr19_-_47735918_47736023	0.0373819	GAGAUGA	ENST00000449228.1|BBC3|ENSG00000105327.11|BCL2 binding component 3 	ENST00000300880.7|BBC3|ENSG00000105327.11|BCL2 binding component 3 	ENST00000341983.4|BBC3|ENSG00000105327.11|BCL2 binding component 3
hg19_v2_chr3_-_125094093_125094198	0.0368187	GAGAUGA	ENST00000484491.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000492394.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000471196.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000468369.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000544464.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000485866.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000360647.4|ZNF148|ENSG00000163848.14|zinc finger protein 148
hg19_v2_chr5_+_71403061_71403169	0.0361795	GAGAUGA	ENST00000512974.1|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B 	ENST00000296755.7|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B
hg19_v2_chr2_+_86947296_86947434	0.035793	GAGAUGA	ENST00000283632.4|RMND5A|ENSG00000153561.8|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
hg19_v2_chr1_+_110577229_110577258	0.0357591	GAGAUGA	ENST00000369795.3|STRIP1|ENSG00000143093.10|striatin interacting protein 1 	ENST00000369794.2|STRIP1|ENSG00000143093.10|striatin interacting protein 1
hg19_v2_chr8_+_102504651_102504683	0.0356689	GAGAUGA	ENST00000251808.3|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila) 	ENST00000521085.1|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila)
hg19_v2_chr14_+_101193164_101193241	0.0353616	GAGAUGA	ENST00000341267.4|DLK1|ENSG00000185559.9|delta-like 1 homolog (Drosophila)
hg19_v2_chr13_-_33002151_33002273	0.0353372	GAGAUGA	ENST00000495479.1|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1 	ENST00000343281.4|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1 	ENST00000464470.1|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1 	ENST00000380139.4|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1 	ENST00000380133.2|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1
hg19_v2_chr12_-_46766577_46766650	0.0348149	GAGAUGA	ENST00000256689.5|SLC38A2|ENSG00000134294.9|solute carrier family 38, member 2
hg19_v2_chr14_-_31676964_31677017	0.0347082	GAGAUGA	ENST00000553700.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr10_+_65281123_65281183	0.0345573	GAGAUGA	ENST00000298249.4|REEP3|ENSG00000165476.8|receptor accessory protein 3 	ENST00000373758.4|REEP3|ENSG00000165476.8|receptor accessory protein 3
hg19_v2_chr5_-_126366500_126366547	0.0345157	GAGAUGA	ENST00000308660.5|MARCH3|ENSG00000173926.5|membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase
hg19_v2_chr17_+_38219063_38219154	0.0342419	GAGAUGA	ENST00000584985.1|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha 	ENST00000264637.4|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha 	ENST00000450525.2|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha
hg19_v2_chr8_-_63998590_63998634	0.0342006	GAGAUGA	ENST00000260116.4|TTPA|ENSG00000137561.4|tocopherol (alpha) transfer protein
hg19_v2_chr10_+_88516396_88516426	0.0332579	GAGAUGA	ENST00000372037.3|BMPR1A|ENSG00000107779.7|bone morphogenetic protein receptor, type IA
hg19_v2_chr6_-_33282163_33282211	0.0324885	GAGAUGA	ENST00000434618.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin) 	ENST00000456592.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin)
hg19_v2_chr10_-_89623194_89623194	0.0314619	GAGAUGA	ENST00000445946.3|KLLN|ENSG00000227268.3|killin, p53-regulated DNA replication inhibitor
hg19_v2_chr16_+_50187556_50187779	0.0310577	GAGAUGA	ENST00000561678.1|PAPD5|ENSG00000121274.8|PAP associated domain containing 5 	ENST00000357464.3|PAPD5|ENSG00000121274.8|PAP associated domain containing 5
hg19_v2_chr15_+_68871308_68871354	0.0306143	GAGAUGA	ENST00000261861.5|CORO2B|ENSG00000103647.8|coronin, actin binding protein, 2B
hg19_v2_chr17_+_56160768_56160786	0.0291458	GAGAUGA	ENST00000579991.2|DYNLL2|ENSG00000264364.2|dynein, light chain, LC8-type 2
hg19_v2_chr14_+_77228532_77228672	0.0291024	GAGAUGA	ENST00000167106.4|VASH1|ENSG00000071246.6|vasohibin 1 	ENST00000554237.1|VASH1|ENSG00000071246.6|vasohibin 1
hg19_v2_chr8_-_38853990_38854061	0.0290468	GAGAUGA	ENST00000456845.2|TM2D2|ENSG00000169490.12|TM2 domain containing 2 	ENST00000397070.2|TM2D2|ENSG00000169490.12|TM2 domain containing 2 	ENST00000517872.1|TM2D2|ENSG00000169490.12|TM2 domain containing 2 	ENST00000412303.1|TM2D2|ENSG00000169490.12|TM2 domain containing 2 	ENST00000456397.2|TM2D2|ENSG00000169490.12|TM2 domain containing 2
hg19_v2_chr19_-_10047219_10047235	0.0283263	GAGAUGA	ENST00000264833.4|OLFM2|ENSG00000105088.4|olfactomedin 2
hg19_v2_chr2_-_96931679_96931756	0.0279798	GAGAUGA	ENST00000258439.3|TMEM127|ENSG00000135956.4|transmembrane protein 127 	ENST00000432959.1|TMEM127|ENSG00000135956.4|transmembrane protein 127
hg19_v2_chr2_-_118771701_118771727	0.0277262	GAGAUGA	ENST00000376300.2|CCDC93|ENSG00000125633.6|coiled-coil domain containing 93 	ENST00000319432.5|CCDC93|ENSG00000125633.6|coiled-coil domain containing 93
hg19_v2_chr15_+_85923856_85923987	0.0266762	GAGAUGA	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr3_+_23847394_23847423	0.0261554	GAGAUGA	ENST00000306627.3|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1
hg19_v2_chr1_-_155532484_155532605	0.0259654	GAGAUGA	ENST00000368346.3|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila) 	ENST00000548830.1|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila)
hg19_v2_chr1_+_145611010_145611046	0.0254715	GAGAUGA	ENST00000369291.5|RNF115|ENSG00000121848.9|ring finger protein 115
hg19_v2_chr14_+_90863327_90863356	0.0251944	GAGAUGA	ENST00000356978.4|CALM1|ENSG00000198668.6|calmodulin 1 (phosphorylase kinase, delta)
hg19_v2_chr1_+_51701924_51702001	0.0250509	GAGAUGA	ENST00000242719.3|RNF11|ENSG00000123091.4|ring finger protein 11
hg19_v2_chr7_+_142985308_142985453	0.0245512	GAGAUGA	ENST00000310447.5|CASP2|ENSG00000106144.15|caspase 2, apoptosis-related cysteine peptidase
hg19_v2_chr8_-_116681221_116681236	0.0216171	GAGAUGA	ENST00000395715.3|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr2_-_180129484_180129574	0.0214682	GAGAUGA	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr1_+_36348790_36348822	0.0212711	GAGAUGA	ENST00000373204.4|AGO1|ENSG00000092847.6|argonaute RISC catalytic component 1
hg19_v2_chr5_+_141488070_141488094	0.0204216	GAGAUGA	ENST00000253814.4|NDFIP1|ENSG00000131507.9|Nedd4 family interacting protein 1
hg19_v2_chr19_-_38806560_38806607	0.0193782	GAGAUGA	ENST00000591755.1|YIF1B|ENSG00000167645.12|Yip1 interacting factor homolog B (S. cerevisiae) 	ENST00000337679.8|YIF1B|ENSG00000167645.12|Yip1 interacting factor homolog B (S. cerevisiae) 	ENST00000339413.6|YIF1B|ENSG00000167645.12|Yip1 interacting factor homolog B (S. cerevisiae)
hg19_v2_chr17_+_28705921_28706000	0.0193414	GAGAUGA	ENST00000225719.4|CPD|ENSG00000108582.7|carboxypeptidase D
hg19_v2_chr10_+_104678032_104678094	0.0193077	GAGAUGA	ENST00000369878.4|CNNM2|ENSG00000148842.13|cyclin M2 	ENST00000369875.3|CNNM2|ENSG00000148842.13|cyclin M2
hg19_v2_chr5_+_139944024_139944054	0.0191999	GAGAUGA	ENST00000323146.3|SLC35A4|ENSG00000176087.10|solute carrier family 35, member A4
hg19_v2_chr11_-_62572901_62572964	0.0186785	GAGAUGA	ENST00000439713.2|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000531131.1|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000530875.1|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000531709.2|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000294172.2|NXF1|ENSG00000162231.9|nuclear RNA export factor 1
hg19_v2_chr19_+_3359561_3359681	0.0183944	GAGAUGA	ENST00000589123.1|NFIC|ENSG00000141905.13|nuclear factor I/C (CCAAT-binding transcription factor) 	ENST00000346156.5|NFIC|ENSG00000141905.13|nuclear factor I/C (CCAAT-binding transcription factor) 	ENST00000395111.3|NFIC|ENSG00000141905.13|nuclear factor I/C (CCAAT-binding transcription factor) 	ENST00000586919.1|NFIC|ENSG00000141905.13|nuclear factor I/C (CCAAT-binding transcription factor)
hg19_v2_chr1_+_27153173_27153230	0.017775	GAGAUGA	ENST00000374142.4|ZDHHC18|ENSG00000204160.7|zinc finger, DHHC-type containing 18
hg19_v2_chr15_+_31619013_31619095	0.0170369	GAGAUGA	ENST00000307145.3|KLF13|ENSG00000169926.5|Kruppel-like factor 13
hg19_v2_chr1_+_110527308_110527349	0.0161701	GAGAUGA	ENST00000369799.5|AHCYL1|ENSG00000168710.13|adenosylhomocysteinase-like 1
hg19_v2_chrX_-_48824793_48824793	0.0156854	GAGAUGA	ENST00000376477.1|KCND1|ENSG00000102057.5|potassium voltage-gated channel, Shal-related subfamily, member 1
hg19_v2_chr12_-_25403737_25403881	0.0150607	GAGAUGA	ENST00000256078.4|KRAS|ENSG00000133703.7|Kirsten rat sarcoma viral oncogene homolog 	ENST00000556131.1|KRAS|ENSG00000133703.7|Kirsten rat sarcoma viral oncogene homolog 	ENST00000311936.3|KRAS|ENSG00000133703.7|Kirsten rat sarcoma viral oncogene homolog 	ENST00000557334.1|KRAS|ENSG00000133703.7|Kirsten rat sarcoma viral oncogene homolog
hg19_v2_chrX_+_152599604_152599626	0.0146246	GAGAUGA	ENST00000370251.3|ZNF275|ENSG00000063587.12|zinc finger protein 275 	ENST00000421401.3|ZNF275|ENSG00000063587.12|zinc finger protein 275
hg19_v2_chr5_+_32711419_32711540	0.0131397	GAGAUGA	ENST00000265074.8|NPR3|ENSG00000113389.11|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)
hg19_v2_chr8_-_18871159_18871201	0.0113856	GAGAUGA	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr12_-_31479045_31479074	0.0110854	GAGAUGA	ENST00000539409.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A 	ENST00000395766.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr14_+_21538429_21538469	0.0107891	GAGAUGA	ENST00000298694.4|ARHGEF40|ENSG00000165801.5|Rho guanine nucleotide exchange factor (GEF) 40 	ENST00000555038.1|ARHGEF40|ENSG00000165801.5|Rho guanine nucleotide exchange factor (GEF) 40
hg19_v2_chr10_-_126849068_126849138	0.0097649	GAGAUGA	ENST00000494626.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2 	ENST00000337195.5|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr7_+_20370746_20370778	0.00845154	GAGAUGA	ENST00000222573.4|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr3_+_49236910_49236944	0.00798038	GAGAUGA	ENST00000452691.2|CCDC36|ENSG00000173421.12|coiled-coil domain containing 36 	ENST00000366429.2|CCDC36|ENSG00000173421.12|coiled-coil domain containing 36
hg19_v2_chr3_+_9834758_9834801	0.00796446	GAGAUGA	ENST00000485273.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa 	ENST00000397256.1|ARPC4-TTLL3|ENSG00000250151.5|ARPC4-TTLL3 readthrough 	ENST00000433034.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa
hg19_v2_chrX_+_133507327_133507386	0.00782313	GAGAUGA	ENST00000332070.3|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000394292.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000370799.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000416404.2|PHF6|ENSG00000156531.12|PHD finger protein 6
hg19_v2_chr19_-_47128294_47128375	0.00742628	GAGAUGA	ENST00000596260.1|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP) 	ENST00000597185.1|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP) 	ENST00000598865.1|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP) 	ENST00000594275.1|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP) 	ENST00000291294.2|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP)
hg19_v2_chr13_+_28813645_28813770	0.00733576	GAGAUGA	ENST00000282391.5|PAN3|ENSG00000152520.9|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
hg19_v2_chr4_-_24914508_24914524	0.00726858	GAGAUGA	ENST00000504487.1|CCDC149|ENSG00000181982.13|coiled-coil domain containing 149
hg19_v2_chr9_+_90112741_90112761	0.00715199	GAGAUGA	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr17_-_61920280_61920425	0.00631333	GAGAUGA	ENST00000448276.2|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 	ENST00000577990.1|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
hg19_v2_chr7_+_6144514_6144614	0.00593125	GAGAUGA	ENST00000306177.5|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42 	ENST00000465073.2|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42
hg19_v2_chrX_-_73834449_73834481	0.00545053	GAGAUGA	ENST00000332687.6|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting 	ENST00000349225.2|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting
hg19_v2_chr12_-_123011536_123011547	0.00543976	GAGAUGA	ENST00000331738.7|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2 	ENST00000354654.2|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2
hg19_v2_chr5_-_159846399_159846412	0.00501703	GAGAUGA	ENST00000297151.4|SLU7|ENSG00000164609.5|SLU7 splicing factor homolog (S. cerevisiae)
hg19_v2_chr9_-_113342160_113342214	0.00463616	GAGAUGA	ENST00000401783.2|SVEP1|ENSG00000165124.13|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 	ENST00000374461.1|SVEP1|ENSG00000165124.13|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
hg19_v2_chrX_-_74145273_74145319	0.00436528	GAGAUGA	ENST00000055682.6|KIAA2022|ENSG00000050030.9|KIAA2022
hg19_v2_chrX_-_111326004_111326004	0.0040068	GAGAUGA	ENST00000262839.2|TRPC5|ENSG00000072315.3|transient receptor potential cation channel, subfamily C, member 5
hg19_v2_chr14_-_31495569_31495636	0.00370637	GAGAUGA	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chr2_-_206950781_206950947	0.00361268	GAGAUGA	ENST00000403263.1|INO80D|ENSG00000114933.11|INO80 complex subunit D
hg19_v2_chr3_+_185303962_185304021	0.00335337	GAGAUGA	ENST00000296257.5|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr12_+_2162447_2162464	0.00266084	GAGAUGA	ENST00000335762.5|CACNA1C|ENSG00000151067.16|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENST00000399655.1|CACNA1C|ENSG00000151067.16|calcium channel, voltage-dependent, L type, alpha 1C subunit
hg19_v2_chrX_+_9983602_9983602	0.00209629	GAGAUGA	ENST00000380861.4|WWC3|ENSG00000047644.13|WWC family member 3
hg19_v2_chr19_-_10121144_10121155	0.0019409	GAGAUGA	ENST00000264828.3|COL5A3|ENSG00000080573.6|collagen, type V, alpha 3
hg19_v2_chr3_+_183873098_183873230	0.00192721	GAGAUGA	ENST00000313143.3|DVL3|ENSG00000161202.13|dishevelled segment polarity protein 3
hg19_v2_chr10_+_31608054_31608156	0.0017228	GAGAUGA	ENST00000320985.10|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000361642.5|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000560721.2|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000558440.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000424869.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000542815.3|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1
hg19_v2_chr6_+_43265992_43266003	0.00170509	GAGAUGA	ENST00000449231.1|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372589.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372585.5|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr14_+_37667118_37667192	0.00157051	GAGAUGA	ENST00000556615.1|MIPOL1|ENSG00000151338.14|mirror-image polydactyly 1 	ENST00000327441.7|MIPOL1|ENSG00000151338.14|mirror-image polydactyly 1 	ENST00000536774.1|MIPOL1|ENSG00000151338.14|mirror-image polydactyly 1
hg19_v2_chr21_-_46238034_46238051	0.00140518	GAGAUGA	ENST00000332859.6|SUMO3|ENSG00000184900.11|small ubiquitin-like modifier 3
hg19_v2_chrX_+_154997474_154997474	0.00114145	GAGAUGA	ENST00000302805.2|SPRY3|ENSG00000168939.6|sprouty homolog 3 (Drosophila)
hg19_v2_chrX_+_73641286_73641400	0.00112236	GAGAUGA	ENST00000587091.1|SLC16A2|ENSG00000147100.5|solute carrier family 16, member 2 (thyroid hormone transporter)
hg19_v2_chr2_+_220042933_220042985	0.00102455	GAGAUGA	ENST00000430297.2|FAM134A|ENSG00000144567.6|family with sequence similarity 134, member A
hg19_v2_chr12_-_54673871_54673925	0.000296363	GAGAUGA	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr15_+_77287426_77287487	7.82555e-05	GAGAUGA	ENST00000558012.1|PSTPIP1|ENSG00000140368.8|proline-serine-threonine phosphatase interacting protein 1 	ENST00000267939.5|PSTPIP1|ENSG00000140368.8|proline-serine-threonine phosphatase interacting protein 1 	ENST00000379595.3|PSTPIP1|ENSG00000140368.8|proline-serine-threonine phosphatase interacting protein 1
hg19_v2_chrX_-_48858630_48858660	7.14886e-05	GAGAUGA	ENST00000376425.3|GRIPAP1|ENSG00000068400.9|GRIP1 associated protein 1 	ENST00000376444.3|GRIPAP1|ENSG00000068400.9|GRIP1 associated protein 1
