hg19_v2_chr20_+_31823792_31823808	5.71605	FOXA3_FOXC2	ENST00000375413.4|BPIFA1|ENSG00000198183.7|BPI fold containing family A, member 1 	ENST00000354297.4|BPIFA1|ENSG00000198183.7|BPI fold containing family A, member 1 	ENST00000375422.2|BPIFA1|ENSG00000198183.7|BPI fold containing family A, member 1
hg19_v2_chr11_+_27076764_27076822	2.33874	FOXA3_FOXC2	ENST00000525090.1|BBOX1|ENSG00000129151.4|butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1
hg19_v2_chr5_+_156712372_156712440	2.00374	FOXA3_FOXC2	ENST00000541131.1|CYFIP2|ENSG00000055163.14|cytoplasmic FMR1 interacting protein 2
hg19_v2_chr20_+_31870927_31870969	1.78572	FOXA3_FOXC2	ENST00000253354.1|BPIFB1|ENSG00000125999.6|BPI fold containing family B, member 1
hg19_v2_chr11_-_108464465_108464507	1.63865	FOXA3_FOXC2	ENST00000525344.1|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr11_-_108464321_108464380	1.37127	FOXA3_FOXC2	ENST00000265843.4|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr7_+_142829162_142829176	1.27199	FOXA3_FOXC2	ENST00000291009.3|PIP|ENSG00000159763.3|prolactin-induced protein
hg19_v2_chr13_+_50589390_50589543	1.00465	FOXA3_FOXC2	ENST00000360473.4|KCNRG|ENSG00000198553.4|potassium channel regulator 	ENST00000312942.1|KCNRG|ENSG00000198553.4|potassium channel regulator
hg19_v2_chr1_-_207095324_207095357	0.897118	FOXA3_FOXC2	ENST00000530505.1|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3 	ENST00000367091.3|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3 	ENST00000442471.2|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3
hg19_v2_chr17_+_79953310_79953319	0.862843	FOXA3_FOXC2	ENST00000582355.2|ASPSCR1|ENSG00000169696.11|alveolar soft part sarcoma chromosome region, candidate 1
hg19_v2_chr1_-_146696901_146696974	0.847634	FOXA3_FOXC2	ENST00000369272.3|FMO5|ENSG00000131781.8|flavin containing monooxygenase 5 	ENST00000441068.2|FMO5|ENSG00000131781.8|flavin containing monooxygenase 5
hg19_v2_chr20_+_9049682_9049710	0.841807	FOXA3_FOXC2	ENST00000334005.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4 	ENST00000378473.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr17_+_72426891_72427052	0.716705	FOXA3_FOXC2	ENST00000392627.1|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chr13_-_36429763_36429779	0.703791	FOXA3_FOXC2	ENST00000379893.1|DCLK1|ENSG00000133083.10|doublecortin-like kinase 1
hg19_v2_chr4_+_165675197_165675216	0.688581	FOXA3_FOXC2	ENST00000515485.1|RP11-294O2.2|ENSG00000248771.1|RP11-294O2.2
hg19_v2_chr9_-_75567962_75567979	0.656064	FOXA3_FOXC2	ENST00000297785.3|ALDH1A1|ENSG00000165092.8|aldehyde dehydrogenase 1 family, member A1 	ENST00000376939.1|ALDH1A1|ENSG00000165092.8|aldehyde dehydrogenase 1 family, member A1
hg19_v2_chr13_-_39564993_39565002	0.640376	FOXA3_FOXC2	ENST00000423210.1|STOML3|ENSG00000133115.7|stomatin (EPB72)-like 3
hg19_v2_chr1_+_104293028_104293028	0.624585	FOXA3_FOXC2	ENST00000370079.3|AMY1C|ENSG00000187733.6|amylase, alpha 1C (salivary)
hg19_v2_chr13_-_86373536_86373623	0.599069	FOXA3_FOXC2	ENST00000400286.2|SLITRK6|ENSG00000184564.8|SLIT and NTRK-like family, member 6
hg19_v2_chrX_+_9431324_9431371	0.596313	FOXA3_FOXC2	ENST00000407597.2|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000424279.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000536365.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000441088.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000380961.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000415293.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr10_-_21435488_21435488	0.577882	FOXA3_FOXC2	ENST00000534331.1|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113 	ENST00000529198.1|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113 	ENST00000377118.4|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113
hg19_v2_chr12_-_71551652_71551679	0.511958	FOXA3_FOXC2	ENST00000546561.1|TSPAN8|ENSG00000127324.4|tetraspanin 8
hg19_v2_chr3_+_69985734_69985754	0.489599	FOXA3_FOXC2	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr12_+_59989918_59989965	0.477406	FOXA3_FOXC2	ENST00000547379.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000549465.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr4_+_165675269_165675289	0.466032	FOXA3_FOXC2	ENST00000507311.1|RP11-294O2.2|ENSG00000248771.1|RP11-294O2.2
hg19_v2_chr20_+_52105495_52105495	0.459132	FOXA3_FOXC2	ENST00000439873.2|AL354993.1|ENSG00000227164.2|Cell growth-inhibiting protein 7; HCG1784586; Uncharacterized protein
hg19_v2_chr1_+_104159999_104160068	0.457642	FOXA3_FOXC2	ENST00000414303.2|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic) 	ENST00000423678.1|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic)
hg19_v2_chr3_-_45957088_45957112	0.45485	FOXA3_FOXC2	ENST00000539217.1|LZTFL1|ENSG00000163818.12|leucine zipper transcription factor-like 1
hg19_v2_chr10_+_95848824_95848852	0.4481	FOXA3_FOXC2	ENST00000371385.3|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1 	ENST00000371375.1|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1
hg19_v2_chr14_+_56585048_56585150	0.432386	FOXA3_FOXC2	ENST00000267460.4|PELI2|ENSG00000139946.5|pellino E3 ubiquitin protein ligase family member 2
hg19_v2_chr2_-_175711133_175711158	0.423586	FOXA3_FOXC2	ENST00000409597.1|CHN1|ENSG00000128656.9|chimerin 1 	ENST00000413882.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr1_-_207095212_207095278	0.419682	FOXA3_FOXC2	ENST00000420007.2|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3
hg19_v2_chr3_-_107941209_107941227	0.41601	FOXA3_FOXC2	ENST00000492106.1|IFT57|ENSG00000114446.4|intraflagellar transport 57 homolog (Chlamydomonas)
hg19_v2_chr20_-_55841398_55841458	0.415617	FOXA3_FOXC2	ENST00000395864.3|BMP7|ENSG00000101144.8|bone morphogenetic protein 7
hg19_v2_chr1_+_61547405_61547534	0.409276	FOXA3_FOXC2	ENST00000371189.4|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr12_-_76879852_76879888	0.384922	FOXA3_FOXC2	ENST00000548341.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr15_+_71185148_71185214	0.383914	FOXA3_FOXC2	ENST00000443425.2|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000560755.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr3_-_45957534_45957655	0.360913	FOXA3_FOXC2	ENST00000536047.1|LZTFL1|ENSG00000163818.12|leucine zipper transcription factor-like 1
hg19_v2_chr1_-_201096312_201096312	0.35484	FOXA3_FOXC2	ENST00000449188.2|ASCL5|ENSG00000232237.2|achaete-scute family bHLH transcription factor 5
hg19_v2_chr1_+_87797351_87797441	0.311442	FOXA3_FOXC2	ENST00000370542.1|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr1_+_244214577_244214593	0.306584	FOXA3_FOXC2	ENST00000358704.4|ZBTB18|ENSG00000179456.9|zinc finger and BTB domain containing 18
hg19_v2_chr11_+_6897856_6897856	0.295531	FOXA3_FOXC2	ENST00000379829.2|OR10A4|ENSG00000170782.3|olfactory receptor, family 10, subfamily A, member 4
hg19_v2_chr3_-_105588231_105588396	0.29065	FOXA3_FOXC2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr3_-_107941230_107941417	0.288434	FOXA3_FOXC2	ENST00000264538.3|IFT57|ENSG00000114446.4|intraflagellar transport 57 homolog (Chlamydomonas)
hg19_v2_chr17_+_7487146_7487211	0.284547	FOXA3_FOXC2	ENST00000396501.4|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000584378.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000423172.2|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000579445.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000585217.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000581380.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1
hg19_v2_chr9_-_28670283_28670283	0.281545	FOXA3_FOXC2	ENST00000379992.2|LINGO2|ENSG00000174482.6|leucine rich repeat and Ig domain containing 2
hg19_v2_chr4_-_138453559_138453572	0.2742	FOXA3_FOXC2	ENST00000511115.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr11_-_116708302_116708347	0.273186	FOXA3_FOXC2	ENST00000375320.1|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000359492.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375329.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375323.1|APOA1|ENSG00000118137.5|apolipoprotein A-I
hg19_v2_chr20_-_55841662_55841736	0.271893	FOXA3_FOXC2	ENST00000395863.3|BMP7|ENSG00000101144.8|bone morphogenetic protein 7 	ENST00000450594.2|BMP7|ENSG00000101144.8|bone morphogenetic protein 7
hg19_v2_chr19_+_42806250_42806298	0.26906	FOXA3_FOXC2	ENST00000598490.1|PRR19|ENSG00000188368.5|proline rich 19 	ENST00000341747.3|PRR19|ENSG00000188368.5|proline rich 19
hg19_v2_chr1_+_12806141_12806199	0.267521	FOXA3_FOXC2	ENST00000288048.5|C1orf158|ENSG00000157330.5|chromosome 1 open reading frame 158
hg19_v2_chr14_-_25479811_25479846	0.263091	FOXA3_FOXC2	ENST00000550887.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr1_-_223308098_223308225	0.25982	FOXA3_FOXC2	ENST00000342210.6|TLR5|ENSG00000187554.7|toll-like receptor 5
hg19_v2_chr7_+_116654935_116654949	0.259515	FOXA3_FOXC2	ENST00000432298.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000422922.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr17_+_72427477_72427667	0.255408	FOXA3_FOXC2	ENST00000342648.5|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C 	ENST00000481232.1|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chr10_-_49482907_49482941	0.251403	FOXA3_FOXC2	ENST00000374201.3|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2 	ENST00000407470.4|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2
hg19_v2_chr5_-_41213607_41213697	0.247376	FOXA3_FOXC2	ENST00000337836.5|C6|ENSG00000039537.9|complement component 6 	ENST00000433294.1|C6|ENSG00000039537.9|complement component 6
hg19_v2_chr1_+_61548225_61548299	0.244501	FOXA3_FOXC2	ENST00000371187.3|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr12_-_39734783_39734860	0.239857	FOXA3_FOXC2	ENST00000552961.1|KIF21A|ENSG00000139116.13|kinesin family member 21A
hg19_v2_chrX_+_10124977_10125036	0.222924	FOXA3_FOXC2	ENST00000380833.4|CLCN4|ENSG00000073464.7|chloride channel, voltage-sensitive 4
hg19_v2_chr14_-_31926623_31926656	0.219471	FOXA3_FOXC2	ENST00000356180.4|DTD2|ENSG00000129480.8|D-tyrosyl-tRNA deacylase 2 (putative)
hg19_v2_chr19_-_18902106_18902123	0.216099	FOXA3_FOXC2	ENST00000542601.2|COMP|ENSG00000105664.6|cartilage oligomeric matrix protein 	ENST00000425807.1|COMP|ENSG00000105664.6|cartilage oligomeric matrix protein 	ENST00000222271.2|COMP|ENSG00000105664.6|cartilage oligomeric matrix protein
hg19_v2_chr3_+_69985792_69985874	0.21425	FOXA3_FOXC2	ENST00000531774.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr16_-_4664860_4664927	0.21312	FOXA3_FOXC2	ENST00000587615.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1 	ENST00000587649.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1 	ENST00000590965.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1 	ENST00000591401.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1 	ENST00000283474.7|UBALD1|ENSG00000153443.8|UBA-like domain containing 1
hg19_v2_chr6_-_41715128_41715142	0.209874	FOXA3_FOXC2	ENST00000356667.4|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000373025.3|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000425343.2|PGC|ENSG00000096088.12|progastricsin (pepsinogen C)
hg19_v2_chr14_+_74034310_74034345	0.2083	FOXA3_FOXC2	ENST00000538782.1|ACOT2|ENSG00000119673.10|acyl-CoA thioesterase 2
hg19_v2_chr2_-_188312971_188312987	0.208007	FOXA3_FOXC2	ENST00000410068.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000447403.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000410102.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like
hg19_v2_chr1_+_114471809_114471855	0.203843	FOXA3_FOXC2	ENST00000426820.2|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr16_-_4665023_4665047	0.202702	FOXA3_FOXC2	ENST00000591897.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1
hg19_v2_chr1_+_35225339_35225343	0.202566	FOXA3_FOXC2	ENST00000339480.1|GJB4|ENSG00000189433.5|gap junction protein, beta 4, 30.3kDa
hg19_v2_chr14_-_101036119_101036131	0.192863	FOXA3_FOXC2	ENST00000355173.2|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated
hg19_v2_chr1_+_18957500_18957623	0.192562	FOXA3_FOXC2	ENST00000375375.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr18_+_3449330_3449411	0.187556	FOXA3_FOXC2	ENST00000549253.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr12_+_59989791_59989874	0.186187	FOXA3_FOXC2	ENST00000552432.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr7_+_134832808_134832879	0.183814	FOXA3_FOXC2	ENST00000275767.3|TMEM140|ENSG00000146859.6|transmembrane protein 140
hg19_v2_chr11_-_110561721_110561721	0.181372	FOXA3_FOXC2	ENST00000357139.3|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20
hg19_v2_chr4_+_86396265_86396276	0.177958	FOXA3_FOXC2	ENST00000395184.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr11_-_102401469_102401488	0.176469	FOXA3_FOXC2	ENST00000260227.4|MMP7|ENSG00000137673.4|matrix metallopeptidase 7 (matrilysin, uterine)
hg19_v2_chr2_+_135596180_135596193	0.174364	FOXA3_FOXC2	ENST00000283054.4|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase 	ENST00000392928.1|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase
hg19_v2_chr17_+_4613776_4613792	0.172886	FOXA3_FOXC2	ENST00000269260.2|ARRB2|ENSG00000141480.13|arrestin, beta 2
hg19_v2_chr18_-_53070913_53070945	0.171749	FOXA3_FOXC2	ENST00000568186.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564228.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr17_-_26694979_26695007	0.171394	FOXA3_FOXC2	ENST00000438614.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr2_+_179318295_179318295	0.169313	FOXA3_FOXC2	ENST00000442710.1|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr10_+_124320156_124320181	0.169054	FOXA3_FOXC2	ENST00000338354.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000344338.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000330163.4|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368909.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368955.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368956.2|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1
hg19_v2_chr17_-_26695013_26695033	0.168988	FOXA3_FOXC2	ENST00000555059.2|CTB-96E2.2|ENSG00000273171.1|Homeobox protein SEBOX
hg19_v2_chr22_-_30867973_30868036	0.16835	FOXA3_FOXC2	ENST00000402286.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000401751.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000539629.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000403066.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000215812.4|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae)
hg19_v2_chr17_-_26733179_26733237	0.165291	FOXA3_FOXC2	ENST00000440501.1|SLC46A1|ENSG00000076351.8|solute carrier family 46 (folate transporter), member 1 	ENST00000321666.5|SLC46A1|ENSG00000076351.8|solute carrier family 46 (folate transporter), member 1
hg19_v2_chr2_+_135596106_135596137	0.161915	FOXA3_FOXC2	ENST00000356140.5|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase
hg19_v2_chr10_+_124320195_124320216	0.160454	FOXA3_FOXC2	ENST00000359586.6|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1
hg19_v2_chr14_-_70263979_70264009	0.16015	FOXA3_FOXC2	ENST00000216540.4|SLC10A1|ENSG00000100652.4|solute carrier family 10 (sodium/bile acid cotransporter), member 1
hg19_v2_chr12_-_92539614_92539673	0.160021	FOXA3_FOXC2	ENST00000256015.3|BTG1|ENSG00000133639.3|B-cell translocation gene 1, anti-proliferative
hg19_v2_chr13_+_52598827_52598827	0.15883	FOXA3_FOXC2	ENST00000521776.2|UTP14C|ENSG00000253797.2|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)
hg19_v2_chr9_+_70856397_70856397	0.157194	FOXA3_FOXC2	ENST00000360171.6|CBWD3|ENSG00000196873.11|COBW domain containing 3
hg19_v2_chr17_+_4613918_4614000	0.156963	FOXA3_FOXC2	ENST00000574954.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000346341.2|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000572457.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000381488.6|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000412477.3|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000571428.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000575877.1|ARRB2|ENSG00000141480.13|arrestin, beta 2
hg19_v2_chr12_-_92536433_92536459	0.15585	FOXA3_FOXC2	ENST00000551563.2|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000546975.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000549802.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79
hg19_v2_chr3_+_50712672_50712703	0.155608	FOXA3_FOXC2	ENST00000266037.9|DOCK3|ENSG00000088538.12|dedicator of cytokinesis 3
hg19_v2_chr9_-_3469181_3469181	0.155486	FOXA3_FOXC2	ENST00000366116.2|AL365202.1|ENSG00000203286.4|Uncharacterized protein
hg19_v2_chrX_+_135730373_135730399	0.154412	FOXA3_FOXC2	ENST00000370628.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr1_+_101361782_101361810	0.153792	FOXA3_FOXC2	ENST00000357650.4|SLC30A7|ENSG00000162695.7|solute carrier family 30 (zinc transporter), member 7
hg19_v2_chr22_+_46449674_46449774	0.152392	FOXA3_FOXC2	ENST00000381051.2|FLJ27365|ENSG00000197182.8|hsa-mir-4763
hg19_v2_chr1_+_246729724_246729794	0.152267	FOXA3_FOXC2	ENST00000366513.4|CNST|ENSG00000162852.9|consortin, connexin sorting protein 	ENST00000366512.3|CNST|ENSG00000162852.9|consortin, connexin sorting protein
hg19_v2_chr5_+_40841276_40841312	0.151239	FOXA3_FOXC2	ENST00000254691.5|CARD6|ENSG00000132357.9|caspase recruitment domain family, member 6
hg19_v2_chr17_+_8924837_8924872	0.150934	FOXA3_FOXC2	ENST00000173229.2|NTN1|ENSG00000065320.4|netrin 1
hg19_v2_chr4_+_187148556_187148687	0.15077	FOXA3_FOXC2	ENST00000264690.6|KLKB1|ENSG00000164344.11|kallikrein B, plasma (Fletcher factor) 1 	ENST00000446598.2|KLKB1|ENSG00000164344.11|kallikrein B, plasma (Fletcher factor) 1 	ENST00000414291.1|KLKB1|ENSG00000164344.11|kallikrein B, plasma (Fletcher factor) 1 	ENST00000513864.1|KLKB1|ENSG00000164344.11|kallikrein B, plasma (Fletcher factor) 1
hg19_v2_chr16_+_69958887_69958927	0.149241	FOXA3_FOXC2	ENST00000568684.1|WWP2|ENSG00000198373.8|WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr16_+_20775358_20775386	0.149192	FOXA3_FOXC2	ENST00000440284.2|ACSM3|ENSG00000005187.7|acyl-CoA synthetase medium-chain family member 3
hg19_v2_chr9_-_70490107_70490246	0.147251	FOXA3_FOXC2	ENST00000377395.4|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000429800.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000430059.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000377384.1|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000382405.3|CBWD5|ENSG00000147996.12|COBW domain containing 5
hg19_v2_chr3_+_119316689_119316710	0.146738	FOXA3_FOXC2	ENST00000273371.4|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr14_+_105267250_105267250	0.146105	FOXA3_FOXC2	ENST00000342537.7|ZBTB42|ENSG00000179627.9|zinc finger and BTB domain containing 42
hg19_v2_chr4_-_70080449_70080449	0.145964	FOXA3_FOXC2	ENST00000446444.1|UGT2B11|ENSG00000213759.4|UDP glucuronosyltransferase 2 family, polypeptide B11
hg19_v2_chr16_-_15474904_15474904	0.144146	FOXA3_FOXC2	ENST00000534094.1|NPIPA5|ENSG00000183793.9|nuclear pore complex interacting protein family, member A5
hg19_v2_chrX_+_135730297_135730352	0.143705	FOXA3_FOXC2	ENST00000370629.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr8_+_19171128_19171182	0.14341	FOXA3_FOXC2	ENST00000265807.3|SH2D4A|ENSG00000104611.7|SH2 domain containing 4A
hg19_v2_chr3_+_119316721_119316739	0.138871	FOXA3_FOXC2	ENST00000488919.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A 	ENST00000495992.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr17_-_66951474_66951550	0.138235	FOXA3_FOXC2	ENST00000269080.2|ABCA8|ENSG00000141338.9|ATP-binding cassette, sub-family A (ABC1), member 8
hg19_v2_chr3_+_132316081_132316102	0.137484	FOXA3_FOXC2	ENST00000249887.2|ACKR4|ENSG00000129048.6|atypical chemokine receptor 4
hg19_v2_chr5_+_161494770_161494787	0.137122	FOXA3_FOXC2	ENST00000414552.2|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2 	ENST00000361925.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr10_+_123923105_123923160	0.13519	FOXA3_FOXC2	ENST00000368999.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chrX_+_65382381_65382392	0.134478	FOXA3_FOXC2	ENST00000519389.1|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr1_+_29563011_29563151	0.133991	FOXA3_FOXC2	ENST00000345512.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000373779.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000356870.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000323874.8|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000428026.2|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000460170.2|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U
hg19_v2_chr15_+_96869165_96869183	0.133804	FOXA3_FOXC2	ENST00000421109.2|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr13_-_99910673_99910682	0.132265	FOXA3_FOXC2	ENST00000397473.2|GPR18|ENSG00000125245.8|G protein-coupled receptor 18 	ENST00000397470.2|GPR18|ENSG00000125245.8|G protein-coupled receptor 18
hg19_v2_chr16_+_14802801_14802801	0.131811	FOXA3_FOXC2	ENST00000526520.1|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3 	ENST00000531598.2|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3
hg19_v2_chr17_-_6947225_6947253	0.130987	FOXA3_FOXC2	ENST00000574600.1|SLC16A11|ENSG00000174326.7|solute carrier family 16, member 11 	ENST00000308009.1|SLC16A11|ENSG00000174326.7|solute carrier family 16, member 11 	ENST00000447225.1|SLC16A11|ENSG00000174326.7|solute carrier family 16, member 11
hg19_v2_chr3_-_187455680_187455732	0.129876	FOXA3_FOXC2	ENST00000438077.1|BCL6|ENSG00000113916.13|B-cell CLL/lymphoma 6
hg19_v2_chr10_-_31288398_31288455	0.129311	FOXA3_FOXC2	ENST00000538351.2|ZNF438|ENSG00000183621.11|zinc finger protein 438
hg19_v2_chr4_+_86396321_86396392	0.125274	FOXA3_FOXC2	ENST00000503995.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr8_+_95908041_95908065	0.12526	FOXA3_FOXC2	ENST00000396113.1|NDUFAF6|ENSG00000156170.8|NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 	ENST00000519136.1|NDUFAF6|ENSG00000156170.8|NADH dehydrogenase (ubiquinone) complex I, assembly factor 6
hg19_v2_chr3_-_114343039_114343085	0.124981	FOXA3_FOXC2	ENST00000481632.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr3_-_193096600_193096632	0.123361	FOXA3_FOXC2	ENST00000446087.1|ATP13A5|ENSG00000187527.6|ATPase type 13A5 	ENST00000342358.4|ATP13A5|ENSG00000187527.6|ATPase type 13A5
hg19_v2_chr6_+_52051171_52051185	0.12306	FOXA3_FOXC2	ENST00000340057.1|IL17A|ENSG00000112115.5|interleukin 17A
hg19_v2_chr1_-_246729544_246729626	0.122676	FOXA3_FOXC2	ENST00000544618.1|TFB2M|ENSG00000162851.6|transcription factor B2, mitochondrial 	ENST00000366514.4|TFB2M|ENSG00000162851.6|transcription factor B2, mitochondrial
hg19_v2_chr14_-_31926701_31926734	0.121227	FOXA3_FOXC2	ENST00000310850.4|DTD2|ENSG00000129480.8|D-tyrosyl-tRNA deacylase 2 (putative)
hg19_v2_chr3_+_148545586_148545609	0.121209	FOXA3_FOXC2	ENST00000282957.4|CPB1|ENSG00000153002.7|carboxypeptidase B1 (tissue) 	ENST00000468341.1|CPB1|ENSG00000153002.7|carboxypeptidase B1 (tissue)
hg19_v2_chr5_+_161494521_161494557	0.120534	FOXA3_FOXC2	ENST00000356592.3|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr2_+_175260451_175260513	0.119833	FOXA3_FOXC2	ENST00000458563.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000409673.3|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000272732.6|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000435964.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr4_-_140223670_140223705	0.119514	FOXA3_FOXC2	ENST00000394228.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa 	ENST00000539387.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr5_+_140787600_140787770	0.117711	FOXA3_FOXC2	ENST00000520790.1|PCDHGB6|ENSG00000253305.1|protocadherin gamma subfamily B, 6
hg19_v2_chr4_-_140223614_140223668	0.116206	FOXA3_FOXC2	ENST00000394223.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr16_-_3350614_3350614	0.11604	FOXA3_FOXC2	ENST00000268674.2|TIGD7|ENSG00000140993.6|tigger transposable element derived 7
hg19_v2_chr3_+_171561127_171561306	0.115468	FOXA3_FOXC2	ENST00000334567.5|TMEM212|ENSG00000186329.5|transmembrane protein 212 	ENST00000450693.1|TMEM212|ENSG00000186329.5|transmembrane protein 212
hg19_v2_chr14_-_24664540_24664690	0.113529	FOXA3_FOXC2	ENST00000530563.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000528895.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000528669.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000532632.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1
hg19_v2_chrX_+_24167746_24167811	0.113117	FOXA3_FOXC2	ENST00000428571.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000539115.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr13_+_73629107_73629148	0.112549	FOXA3_FOXC2	ENST00000539231.1|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr6_+_44310421_44310486	0.112036	FOXA3_FOXC2	ENST00000288390.2|SPATS1|ENSG00000249481.2|spermatogenesis associated, serine-rich 1
hg19_v2_chr15_+_28624878_28624878	0.110231	FOXA3_FOXC2	ENST00000450328.2|GOLGA8F|ENSG00000153684.10|golgin A8 family, member F
hg19_v2_chr19_+_47421933_47421933	0.10929	FOXA3_FOXC2	ENST00000404338.3|ARHGAP35|ENSG00000160007.13|Rho GTPase activating protein 35
hg19_v2_chr4_+_146403912_146403972	0.107449	FOXA3_FOXC2	ENST00000507367.1|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000394092.2|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000515385.1|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr21_-_43786634_43786703	0.106949	FOXA3_FOXC2	ENST00000291527.2|TFF1|ENSG00000160182.2|trefoil factor 1
hg19_v2_chr8_+_95907993_95908004	0.106786	FOXA3_FOXC2	ENST00000523378.1|NDUFAF6|ENSG00000156170.8|NADH dehydrogenase (ubiquinone) complex I, assembly factor 6
hg19_v2_chr7_+_151038850_151038915	0.10673	FOXA3_FOXC2	ENST00000355851.4|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000566856.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000470229.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1
hg19_v2_chr2_-_227050079_227050093	0.105053	FOXA3_FOXC2	ENST00000423838.1|AC068138.1|ENSG00000235070.3|AC068138.1
hg19_v2_chr1_+_43855560_43855640	0.104251	FOXA3_FOXC2	ENST00000562955.1|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse)
hg19_v2_chr4_-_11431389_11431389	0.103156	FOXA3_FOXC2	ENST00000002596.5|HS3ST1|ENSG00000002587.5|heparan sulfate (glucosamine) 3-O-sulfotransferase 1
hg19_v2_chr1_-_150602035_150602095	0.101522	FOXA3_FOXC2	ENST00000503241.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369016.4|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000339643.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000271690.8|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000356527.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000362052.7|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000503345.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369014.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369009.3|ENSA|ENSG00000143420.13|endosulfine alpha
hg19_v2_chr19_-_46088068_46088100	0.100716	FOXA3_FOXC2	ENST00000263275.4|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 	ENST00000323060.3|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr18_+_61575200_61575230	0.0981555	FOXA3_FOXC2	ENST00000238508.3|SERPINB10|ENSG00000242550.1|serpin peptidase inhibitor, clade B (ovalbumin), member 10
hg19_v2_chr6_+_44310376_44310413	0.0977108	FOXA3_FOXC2	ENST00000515220.1|SPATS1|ENSG00000249481.2|spermatogenesis associated, serine-rich 1 	ENST00000323108.8|SPATS1|ENSG00000249481.2|spermatogenesis associated, serine-rich 1
hg19_v2_chr14_+_56127989_56128008	0.0955689	FOXA3_FOXC2	ENST00000555573.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chrX_+_24167828_24167907	0.0938784	FOXA3_FOXC2	ENST00000379188.3|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000419690.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000379177.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000304543.5|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr14_-_21562648_21562659	0.0920476	FOXA3_FOXC2	ENST00000555270.1|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr17_-_26697304_26697373	0.0908742	FOXA3_FOXC2	ENST00000536498.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr1_+_114471972_114472000	0.0907085	FOXA3_FOXC2	ENST00000369559.4|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1 	ENST00000369554.2|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr17_-_39324424_39324474	0.0902998	FOXA3_FOXC2	ENST00000391356.2|KRTAP4-3|ENSG00000196156.3|keratin associated protein 4-3
hg19_v2_chrX_-_133792480_133792522	0.0896226	FOXA3_FOXC2	ENST00000359237.4|PLAC1|ENSG00000170965.5|placenta-specific 1
hg19_v2_chr15_+_60296421_60296464	0.0864893	FOXA3_FOXC2	ENST00000396057.4|FOXB1|ENSG00000171956.5|forkhead box B1
hg19_v2_chr12_-_122018346_122018389	0.0855113	FOXA3_FOXC2	ENST00000377069.4|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B
hg19_v2_chr4_-_87028478_87028514	0.0848763	FOXA3_FOXC2	ENST00000515400.1|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395157.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chrX_-_80457385_80457441	0.0838305	FOXA3_FOXC2	ENST00000451455.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000436386.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000358130.2|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5
hg19_v2_chr1_-_150669500_150669602	0.0823612	FOXA3_FOXC2	ENST00000271732.3|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chr12_+_58087901_58087947	0.082301	FOXA3_FOXC2	ENST00000315970.7|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000547079.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000439210.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000389146.6|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000413095.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000551035.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000257966.8|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000435406.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000550372.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000389142.5|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin
hg19_v2_chr6_+_146348810_146348918	0.0815878	FOXA3_FOXC2	ENST00000492807.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr12_+_48516357_48516436	0.0806578	FOXA3_FOXC2	ENST00000549022.1|PFKM|ENSG00000152556.11|phosphofructokinase, muscle 	ENST00000547587.1|PFKM|ENSG00000152556.11|phosphofructokinase, muscle 	ENST00000312352.7|PFKM|ENSG00000152556.11|phosphofructokinase, muscle
hg19_v2_chr17_-_39183452_39183468	0.0805155	FOXA3_FOXC2	ENST00000361883.5|KRTAP1-5|ENSG00000221852.4|keratin associated protein 1-5
hg19_v2_chr15_-_40600026_40600061	0.0789373	FOXA3_FOXC2	ENST00000456256.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000557821.1|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr3_+_137728842_137728952	0.0786163	FOXA3_FOXC2	ENST00000183605.5|CLDN18|ENSG00000066405.8|claudin 18
hg19_v2_chr1_+_159141397_159141549	0.0775241	FOXA3_FOXC2	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr12_-_48099754_48099769	0.077239	FOXA3_FOXC2	ENST00000380650.4|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3
hg19_v2_chr13_+_95364963_95364978	0.0743893	FOXA3_FOXC2	ENST00000438290.2|SOX21-AS1|ENSG00000227640.2|SOX21 antisense RNA 1 (head to head)
hg19_v2_chr1_-_150669604_150669643	0.0734337	FOXA3_FOXC2	ENST00000427665.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like 	ENST00000540514.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chr2_+_169659121_169659157	0.0732096	FOXA3_FOXC2	ENST00000397206.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000397209.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000421711.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking
hg19_v2_chr22_-_39268308_39268319	0.0726905	FOXA3_FOXC2	ENST00000407418.3|CBX6|ENSG00000183741.7|chromobox homolog 6
hg19_v2_chr14_-_74551096_74551171	0.0726811	FOXA3_FOXC2	ENST00000350259.4|ALDH6A1|ENSG00000119711.8|aldehyde dehydrogenase 6 family, member A1
hg19_v2_chr6_+_161123270_161123278	0.0726524	FOXA3_FOXC2	ENST00000366924.2|PLG|ENSG00000122194.14|plasminogen 	ENST00000308192.9|PLG|ENSG00000122194.14|plasminogen 	ENST00000418964.1|PLG|ENSG00000122194.14|plasminogen
hg19_v2_chr6_-_165989936_165989936	0.0716786	FOXA3_FOXC2	ENST00000354448.4|PDE10A|ENSG00000112541.9|phosphodiesterase 10A
hg19_v2_chr2_+_169658928_169659113	0.0704276	FOXA3_FOXC2	ENST00000317647.7|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000445023.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking
hg19_v2_chr6_+_10528560_10528589	0.0702204	FOXA3_FOXC2	ENST00000379597.3|GCNT2|ENSG00000111846.11|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
hg19_v2_chr12_-_48099773_48099844	0.0702026	FOXA3_FOXC2	ENST00000432584.3|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3 	ENST00000005386.3|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3
hg19_v2_chr6_+_21666633_21666681	0.0700323	FOXA3_FOXC2	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr6_+_146348782_146348809	0.070003	FOXA3_FOXC2	ENST00000361719.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000392299.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr17_-_79212825_79212865	0.0696588	FOXA3_FOXC2	ENST00000374769.2|ENTHD2|ENSG00000167302.5|ENTH domain containing 2
hg19_v2_chr2_+_109223595_109223617	0.067867	FOXA3_FOXC2	ENST00000410093.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr1_-_43855479_43855486	0.0678029	FOXA3_FOXC2	ENST00000290663.6|MED8|ENSG00000159479.12|mediator complex subunit 8 	ENST00000372457.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr16_+_84801852_84801877	0.0673144	FOXA3_FOXC2	ENST00000569925.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10 	ENST00000567526.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10
hg19_v2_chr1_-_54405773_54405874	0.0660953	FOXA3_FOXC2	ENST00000371376.1|HSPB11|ENSG00000081870.7|heat shock protein family B (small), member 11
hg19_v2_chr7_-_141673573_141673573	0.065404	FOXA3_FOXC2	ENST00000547270.1|TAS2R38|ENSG00000257138.1|taste receptor, type 2, member 38
hg19_v2_chr1_+_150488205_150488251	0.0650124	FOXA3_FOXC2	ENST00000416894.1|LINC00568|ENSG00000228126.1|long intergenic non-protein coding RNA 568
hg19_v2_chr4_-_88450244_88450287	0.0647791	FOXA3_FOXC2	ENST00000503414.1|SPARCL1|ENSG00000152583.8|SPARC-like 1 (hevin)
hg19_v2_chr20_-_1974692_1974732	0.0640214	FOXA3_FOXC2	ENST00000217305.2|PDYN|ENSG00000101327.4|prodynorphin 	ENST00000539905.1|PDYN|ENSG00000101327.4|prodynorphin
hg19_v2_chr19_-_47157914_47157980	0.0638414	FOXA3_FOXC2	ENST00000300875.4|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3
hg19_v2_chr6_+_146350267_146350419	0.0635232	FOXA3_FOXC2	ENST00000355289.4|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000282753.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr11_-_85397167_85397320	0.0632019	FOXA3_FOXC2	ENST00000316398.3|CCDC89|ENSG00000179071.3|coiled-coil domain containing 89
hg19_v2_chr8_+_21777159_21777221	0.0631874	FOXA3_FOXC2	ENST00000434536.1|XPO7|ENSG00000130227.12|exportin 7 	ENST00000252512.9|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr3_-_168864427_168864464	0.0631765	FOXA3_FOXC2	ENST00000468789.1|MECOM|ENSG00000085276.13|MDS1 and EVI1 complex locus
hg19_v2_chr17_-_79212884_79212895	0.062385	FOXA3_FOXC2	ENST00000300714.3|ENTHD2|ENSG00000167302.5|ENTH domain containing 2
hg19_v2_chr8_-_133772794_133772840	0.0620313	FOXA3_FOXC2	ENST00000519187.1|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000523829.1|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000356838.3|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000377901.4|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000519304.1|TMEM71|ENSG00000165071.10|transmembrane protein 71
hg19_v2_chr12_-_15038779_15038860	0.0606935	FOXA3_FOXC2	ENST00000228938.5|MGP|ENSG00000111341.5|matrix Gla protein 	ENST00000539261.1|MGP|ENSG00000111341.5|matrix Gla protein
hg19_v2_chr20_+_43935474_43935491	0.0602114	FOXA3_FOXC2	ENST00000372743.1|RBPJL|ENSG00000124232.6|recombination signal binding protein for immunoglobulin kappa J region-like 	ENST00000372741.3|RBPJL|ENSG00000124232.6|recombination signal binding protein for immunoglobulin kappa J region-like 	ENST00000343694.3|RBPJL|ENSG00000124232.6|recombination signal binding protein for immunoglobulin kappa J region-like
hg19_v2_chr2_-_46844242_46844258	0.0601982	FOXA3_FOXC2	ENST00000281382.6|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr14_+_58711539_58711627	0.0599976	FOXA3_FOXC2	ENST00000216455.4|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3 	ENST00000412908.2|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3 	ENST00000557508.1|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3
hg19_v2_chr1_+_18958008_18958023	0.059549	FOXA3_FOXC2	ENST00000420770.2|PAX7|ENSG00000009709.7|paired box 7 	ENST00000400661.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr17_-_39041479_39041501	0.0590688	FOXA3_FOXC2	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chr9_+_71986182_71986182	0.0583735	FOXA3_FOXC2	ENST00000303068.7|FAM189A2|ENSG00000135063.13|family with sequence similarity 189, member A2
hg19_v2_chr20_+_44520009_44520020	0.0583598	FOXA3_FOXC2	ENST00000607482.1|CTSA|ENSG00000064601.12|cathepsin A 	ENST00000372459.2|CTSA|ENSG00000064601.12|cathepsin A
hg19_v2_chr5_-_58571935_58571951	0.0578015	FOXA3_FOXC2	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr2_-_225434538_225434545	0.0566684	FOXA3_FOXC2	ENST00000409096.1|CUL3|ENSG00000036257.8|cullin 3
hg19_v2_chr6_-_159466042_159466066	0.0565626	FOXA3_FOXC2	ENST00000338313.5|TAGAP|ENSG00000164691.12|T-cell activation RhoGTPase activating protein
hg19_v2_chrX_-_101410762_101411029	0.0556878	FOXA3_FOXC2	ENST00000543160.1|BEX5|ENSG00000184515.6|brain expressed, X-linked 5 	ENST00000333643.3|BEX5|ENSG00000184515.6|brain expressed, X-linked 5
hg19_v2_chr2_-_179567206_179567260	0.0556257	FOXA3_FOXC2	ENST00000414766.1|TTN|ENSG00000155657.19|titin
hg19_v2_chr6_+_158733692_158733692	0.0555854	FOXA3_FOXC2	ENST00000367094.2|TULP4|ENSG00000130338.8|tubby like protein 4 	ENST00000367097.3|TULP4|ENSG00000130338.8|tubby like protein 4
hg19_v2_chr3_+_142315225_142315290	0.0552467	FOXA3_FOXC2	ENST00000457734.2|PLS1|ENSG00000120756.8|plastin 1 	ENST00000483373.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000475296.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000495744.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000476044.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000461644.1|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr5_+_61708582_61708616	0.054774	FOXA3_FOXC2	ENST00000325324.6|IPO11|ENSG00000086200.12|importin 11
hg19_v2_chr3_+_114012819_114012833	0.054542	FOXA3_FOXC2	ENST00000383671.3|TIGIT|ENSG00000181847.7|T cell immunoreceptor with Ig and ITIM domains
hg19_v2_chr22_+_35462129_35462156	0.054366	FOXA3_FOXC2	ENST00000404699.2|ISX|ENSG00000175329.8|intestine-specific homeobox 	ENST00000308700.6|ISX|ENSG00000175329.8|intestine-specific homeobox
hg19_v2_chr6_-_159466136_159466184	0.0543144	FOXA3_FOXC2	ENST00000367066.3|TAGAP|ENSG00000164691.12|T-cell activation RhoGTPase activating protein 	ENST00000326965.6|TAGAP|ENSG00000164691.12|T-cell activation RhoGTPase activating protein
hg19_v2_chr14_-_38064198_38064239	0.0542802	FOXA3_FOXC2	ENST00000250448.2|FOXA1|ENSG00000129514.4|forkhead box A1
hg19_v2_chr6_-_42016385_42016706	0.0522218	FOXA3_FOXC2	ENST00000502771.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000508143.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000514588.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000510503.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000415497.2|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000372988.4|CCND3|ENSG00000112576.8|cyclin D3
hg19_v2_chr8_+_52730143_52730143	0.0521718	FOXA3_FOXC2	ENST00000415643.1|AC090186.1|ENSG00000232941.1|Uncharacterized protein
hg19_v2_chr6_-_25830785_25830844	0.0513844	FOXA3_FOXC2	ENST00000468082.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr2_-_46844159_46844209	0.0508021	FOXA3_FOXC2	ENST00000474980.1|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F 	ENST00000306465.4|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr3_+_137717571_137717591	0.0504342	FOXA3_FOXC2	ENST00000343735.4|CLDN18|ENSG00000066405.8|claudin 18
hg19_v2_chrX_+_65382433_65382486	0.049739	FOXA3_FOXC2	ENST00000374727.3|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr6_-_26056695_26056701	0.0485024	FOXA3_FOXC2	ENST00000343677.2|HIST1H1C|ENSG00000187837.2|histone cluster 1, H1c
hg19_v2_chr20_+_44519948_44519986	0.0482001	FOXA3_FOXC2	ENST00000354880.5|CTSA|ENSG00000064601.12|cathepsin A 	ENST00000191018.5|CTSA|ENSG00000064601.12|cathepsin A
hg19_v2_chr5_+_74807886_74807926	0.0478289	FOXA3_FOXC2	ENST00000514296.1|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa
hg19_v2_chr4_-_186456766_186456794	0.0472192	FOXA3_FOXC2	ENST00000284771.6|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chr1_+_154540246_154540260	0.0467551	FOXA3_FOXC2	ENST00000368476.3|CHRNB2|ENSG00000160716.4|cholinergic receptor, nicotinic, beta 2 (neuronal)
hg19_v2_chr5_+_61874562_61874685	0.0466425	FOXA3_FOXC2	ENST00000334994.5|LRRC70|ENSG00000186105.7|leucine rich repeat containing 70 	ENST00000409534.1|IPO11|ENSG00000086200.12|importin 11
hg19_v2_chr21_+_17791648_17791775	0.0451602	FOXA3_FOXC2	ENST00000602892.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000418813.2|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000435697.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr2_+_128175997_128176020	0.044205	FOXA3_FOXC2	ENST00000234071.3|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000429925.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000442644.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000453608.2|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa)
hg19_v2_chr9_+_131062367_131062367	0.0436888	FOXA3_FOXC2	ENST00000601297.1|AL359091.2|ENSG00000268211.1|CDNA: FLJ21673 fis, clone COL09042; HCG2036511; Uncharacterized protein
hg19_v2_chr4_-_186456652_186456668	0.0431822	FOXA3_FOXC2	ENST00000284767.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3 	ENST00000284770.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chr2_+_68592305_68592405	0.0431647	FOXA3_FOXC2	ENST00000234313.7|PLEK|ENSG00000115956.9|pleckstrin
hg19_v2_chr8_+_75736761_75736777	0.0431251	FOXA3_FOXC2	ENST00000260113.2|PI15|ENSG00000137558.3|peptidase inhibitor 15
hg19_v2_chr1_+_40974431_40974447	0.0421108	FOXA3_FOXC2	ENST00000296380.4|EXO5|ENSG00000164002.7|exonuclease 5 	ENST00000432259.1|EXO5|ENSG00000164002.7|exonuclease 5 	ENST00000418186.1|EXO5|ENSG00000164002.7|exonuclease 5
hg19_v2_chr14_-_36988882_36988898	0.0415852	FOXA3_FOXC2	ENST00000498187.2|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr6_+_146350622_146350749	0.0406748	FOXA3_FOXC2	ENST00000507907.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr6_-_88875654_88875767	0.0392184	FOXA3_FOXC2	ENST00000535130.1|CNR1|ENSG00000118432.11|cannabinoid receptor 1 (brain)
hg19_v2_chr5_-_159846399_159846412	0.0391087	FOXA3_FOXC2	ENST00000297151.4|SLU7|ENSG00000164609.5|SLU7 splicing factor homolog (S. cerevisiae)
hg19_v2_chr15_+_58430368_58430401	0.0384416	FOXA3_FOXC2	ENST00000558772.1|AQP9|ENSG00000103569.5|aquaporin 9 	ENST00000219919.4|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr2_+_46844290_46844384	0.0383208	FOXA3_FOXC2	ENST00000238892.3|CRIPT|ENSG00000119878.5|cysteine-rich PDZ-binding protein
hg19_v2_chr4_+_184826418_184826522	0.0382115	FOXA3_FOXC2	ENST00000308497.4|STOX2|ENSG00000173320.5|storkhead box 2 	ENST00000438269.1|STOX2|ENSG00000173320.5|storkhead box 2
hg19_v2_chr5_+_147258266_147258280	0.0379398	FOXA3_FOXC2	ENST00000296694.4|SCGB3A2|ENSG00000164265.4|secretoglobin, family 3A, member 2
hg19_v2_chr4_-_74486109_74486166	0.0377199	FOXA3_FOXC2	ENST00000395777.2|RASSF6|ENSG00000169435.9|Ras association (RalGDS/AF-6) domain family member 6
hg19_v2_chr4_-_74486347_74486348	0.0364469	FOXA3_FOXC2	ENST00000342081.3|RASSF6|ENSG00000169435.9|Ras association (RalGDS/AF-6) domain family member 6
hg19_v2_chr14_-_74551172_74551196	0.0363222	FOXA3_FOXC2	ENST00000553458.1|ALDH6A1|ENSG00000119711.8|aldehyde dehydrogenase 6 family, member A1
hg19_v2_chr21_-_31588365_31588398	0.0359815	FOXA3_FOXC2	ENST00000399899.1|CLDN8|ENSG00000156284.4|claudin 8
hg19_v2_chr10_-_46030841_46030846	0.0351852	FOXA3_FOXC2	ENST00000453424.2|MARCH8|ENSG00000165406.11|membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase
hg19_v2_chr1_-_120354079_120354283	0.0351049	FOXA3_FOXC2	ENST00000354219.1|REG4|ENSG00000134193.10|regenerating islet-derived family, member 4 	ENST00000369401.4|REG4|ENSG00000134193.10|regenerating islet-derived family, member 4 	ENST00000256585.5|REG4|ENSG00000134193.10|regenerating islet-derived family, member 4
hg19_v2_chr21_-_31588338_31588357	0.0350201	FOXA3_FOXC2	ENST00000286809.1|CLDN8|ENSG00000156284.4|claudin 8
hg19_v2_chr21_+_17791838_17791869	0.034249	FOXA3_FOXC2	ENST00000453910.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr2_-_86422523_86422595	0.0342199	FOXA3_FOXC2	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chr12_-_21927736_21927768	0.0315593	FOXA3_FOXC2	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr21_-_15583165_15583170	0.0313215	FOXA3_FOXC2	ENST00000536861.1|LIPI|ENSG00000188992.7|lipase, member I
hg19_v2_chr10_+_35484053_35484076	0.0312197	FOXA3_FOXC2	ENST00000487763.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000473940.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000488328.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000356917.5|CREM|ENSG00000095794.15|cAMP responsive element modulator
hg19_v2_chr7_+_106809406_106809460	0.030061	FOXA3_FOXC2	ENST00000468410.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000478930.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000464009.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000222574.4|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chrX_-_47863348_47863412	0.0292882	FOXA3_FOXC2	ENST00000376943.3|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000396965.1|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000305127.6|ZNF182|ENSG00000147118.6|zinc finger protein 182
hg19_v2_chr15_+_58430567_58430589	0.0292667	FOXA3_FOXC2	ENST00000536493.1|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr1_-_152332480_152332484	0.0291854	FOXA3_FOXC2	ENST00000388718.5|FLG2|ENSG00000143520.6|filaggrin family member 2
hg19_v2_chr20_+_11898507_11898565	0.0282066	FOXA3_FOXC2	ENST00000378226.2|BTBD3|ENSG00000132640.10|BTB (POZ) domain containing 3
hg19_v2_chr3_+_35721182_35721277	0.0281387	FOXA3_FOXC2	ENST00000413378.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000417925.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr5_-_169725231_169725264	0.0275997	FOXA3_FOXC2	ENST00000046794.5|LCP2|ENSG00000043462.7|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)
hg19_v2_chr6_+_125524785_125524861	0.026838	FOXA3_FOXC2	ENST00000392482.2|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr2_+_175260514_175260536	0.0262054	FOXA3_FOXC2	ENST00000424069.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000427038.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr11_-_124180733_124180733	0.0259654	FOXA3_FOXC2	ENST00000357821.2|OR8D1|ENSG00000196341.2|olfactory receptor, family 8, subfamily D, member 1
hg19_v2_chr1_+_74701062_74701099	0.0255452	FOXA3_FOXC2	ENST00000326637.3|TNNI3K|ENSG00000116783.10|TNNI3 interacting kinase
hg19_v2_chr1_-_16763685_16763685	0.0252918	FOXA3_FOXC2	ENST00000540400.1|SPATA21|ENSG00000187144.7|spermatogenesis associated 21
hg19_v2_chr6_+_1080164_1080164	0.0244876	FOXA3_FOXC2	ENST00000314040.1|AL033381.1|ENSG00000176515.1|Uncharacterized protein; cDNA FLJ34594 fis, clone KIDNE2009109
hg19_v2_chr7_+_26438187_26438351	0.0237284	FOXA3_FOXC2	ENST00000439120.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000430548.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000421862.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000449537.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000420774.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000418758.2|AC004540.5|ENSG00000214870.4|AC004540.5
hg19_v2_chr5_-_24645078_24645096	0.0234582	FOXA3_FOXC2	ENST00000264463.4|CDH10|ENSG00000040731.6|cadherin 10, type 2 (T2-cadherin)
hg19_v2_chr15_+_49462434_49462488	0.0233412	FOXA3_FOXC2	ENST00000558145.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000543495.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000544523.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560138.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr6_+_30103885_30103922	0.0233021	FOXA3_FOXC2	ENST00000396581.1|TRIM40|ENSG00000204614.4|tripartite motif containing 40
hg19_v2_chr7_+_95115210_95115217	0.0225876	FOXA3_FOXC2	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr6_-_24666819_24666974	0.0221973	FOXA3_FOXC2	ENST00000341060.3|TDP2|ENSG00000111802.9|tyrosyl-DNA phosphodiesterase 2
hg19_v2_chr2_-_183291741_183291771	0.0221013	FOXA3_FOXC2	ENST00000351439.5|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent 	ENST00000409365.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr4_+_184365744_184365797	0.0219675	FOXA3_FOXC2	ENST00000504169.1|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein 	ENST00000302350.4|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein
hg19_v2_chr15_-_40600111_40600166	0.0209176	FOXA3_FOXC2	ENST00000543785.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000260402.3|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr15_-_65321943_65321984	0.0208896	FOXA3_FOXC2	ENST00000220058.4|MTFMT|ENSG00000103707.5|mitochondrial methionyl-tRNA formyltransferase
hg19_v2_chr15_+_49462397_49462430	0.0208629	FOXA3_FOXC2	ENST00000396509.2|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr8_+_104384616_104384661	0.0201949	FOXA3_FOXC2	ENST00000520337.1|CTHRC1|ENSG00000164932.8|collagen triple helix repeat containing 1
hg19_v2_chr8_-_120651020_120651091	0.0200599	FOXA3_FOXC2	ENST00000522826.1|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENST00000520066.1|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENST00000259486.6|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENST00000075322.6|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2
hg19_v2_chr6_+_108882069_108882087	0.0198333	FOXA3_FOXC2	ENST00000406360.1|FOXO3|ENSG00000118689.10|forkhead box O3
hg19_v2_chr21_+_17792672_17792775	0.0197562	FOXA3_FOXC2	ENST00000602620.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr8_-_145754428_145754516	0.0197292	FOXA3_FOXC2	ENST00000527462.1|C8orf82|ENSG00000213563.2|chromosome 8 open reading frame 82 	ENST00000313465.5|C8orf82|ENSG00000213563.2|chromosome 8 open reading frame 82 	ENST00000524821.1|C8orf82|ENSG00000213563.2|chromosome 8 open reading frame 82
hg19_v2_chr3_-_116163830_116163855	0.0195358	FOXA3_FOXC2	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr21_-_36259445_36259519	0.0177143	FOXA3_FOXC2	ENST00000399240.1|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr2_-_32490859_32490923	0.0173051	FOXA3_FOXC2	ENST00000404025.2|NLRC4|ENSG00000091106.14|NLR family, CARD domain containing 4
hg19_v2_chr17_+_56232494_56232494	0.0167497	FOXA3_FOXC2	ENST00000268912.5|OR4D1|ENSG00000141194.5|olfactory receptor, family 4, subfamily D, member 1
hg19_v2_chr10_-_46030787_46030824	0.0167426	FOXA3_FOXC2	ENST00000395769.2|MARCH8|ENSG00000165406.11|membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase
hg19_v2_chr1_+_239882842_239882850	0.01597	FOXA3_FOXC2	ENST00000448020.1|CHRM3|ENSG00000133019.7|cholinergic receptor, muscarinic 3
hg19_v2_chr6_-_168479839_168479904	0.015515	FOXA3_FOXC2	ENST00000283309.6|FRMD1|ENSG00000153303.12|FERM domain containing 1
hg19_v2_chr2_-_175260368_175260450	0.0154029	FOXA3_FOXC2	ENST00000342016.3|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1 	ENST00000362053.5|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1
hg19_v2_chr10_-_126849588_126849614	0.0151214	FOXA3_FOXC2	ENST00000411419.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr4_+_79567314_79567348	0.0148993	FOXA3_FOXC2	ENST00000503539.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000504675.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr6_-_122792919_122792970	0.0142046	FOXA3_FOXC2	ENST00000339697.4|SERINC1|ENSG00000111897.6|serine incorporator 1
hg19_v2_chr1_+_179851823_179851846	0.0141357	FOXA3_FOXC2	ENST00000435319.4|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr1_-_178840157_178840187	0.0138645	FOXA3_FOXC2	ENST00000367629.1|ANGPTL1|ENSG00000116194.8|angiopoietin-like 1 	ENST00000234816.2|ANGPTL1|ENSG00000116194.8|angiopoietin-like 1
hg19_v2_chr14_+_51706886_51707006	0.0136573	FOXA3_FOXC2	ENST00000457354.2|TMX1|ENSG00000139921.8|thioredoxin-related transmembrane protein 1
hg19_v2_chr14_-_36990354_36990397	0.0131816	FOXA3_FOXC2	ENST00000518149.1|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr1_+_43855545_43855557	0.0130911	FOXA3_FOXC2	ENST00000372450.4|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse) 	ENST00000310739.4|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse)
hg19_v2_chr20_-_43150601_43150751	0.013051	FOXA3_FOXC2	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr10_-_126849068_126849138	0.0120349	FOXA3_FOXC2	ENST00000494626.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2 	ENST00000337195.5|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr5_-_98262240_98262240	0.0118368	FOXA3_FOXC2	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr21_-_38445011_38445200	0.0112129	FOXA3_FOXC2	ENST00000464265.1|PIGP|ENSG00000185808.9|phosphatidylinositol glycan anchor biosynthesis, class P 	ENST00000399102.1|PIGP|ENSG00000185808.9|phosphatidylinositol glycan anchor biosynthesis, class P
hg19_v2_chr12_-_18243119_18243133	0.0112004	FOXA3_FOXC2	ENST00000538724.1|RERGL|ENSG00000111404.2|RERG/RAS-like 	ENST00000229002.2|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr10_-_128210005_128210014	0.0106045	FOXA3_FOXC2	ENST00000284694.7|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90 	ENST00000454341.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90 	ENST00000432642.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90 	ENST00000392694.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chr14_-_23526739_23526766	0.0103975	FOXA3_FOXC2	ENST00000397359.3|CDH24|ENSG00000139880.15|cadherin 24, type 2 	ENST00000487137.2|CDH24|ENSG00000139880.15|cadherin 24, type 2
hg19_v2_chr16_-_48281305_48281419	0.0102953	FOXA3_FOXC2	ENST00000356608.2|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11
hg19_v2_chr7_-_81399411_81399432	0.0102836	FOXA3_FOXC2	ENST00000423064.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr4_+_79567362_79567380	0.00948607	FOXA3_FOXC2	ENST00000512322.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr6_-_161085291_161085308	0.00942641	FOXA3_FOXC2	ENST00000316300.5|LPA|ENSG00000198670.7|lipoprotein, Lp(a)
hg19_v2_chr7_-_81399355_81399373	0.00937202	FOXA3_FOXC2	ENST00000457544.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr1_-_151431647_151431669	0.00886434	FOXA3_FOXC2	ENST00000368863.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000409503.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000491586.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000533351.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000540984.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr1_-_246357029_246357043	0.00846152	FOXA3_FOXC2	ENST00000391836.2|SMYD3|ENSG00000185420.14|SET and MYND domain containing 3
hg19_v2_chr16_+_73420942_73420962	0.00814161	FOXA3_FOXC2	ENST00000554640.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1	ENST00000562661.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1	ENST00000561875.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1
hg19_v2_chr5_+_74807581_74807724	0.00645967	FOXA3_FOXC2	ENST00000241436.4|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa 	ENST00000352007.5|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa
hg19_v2_chr15_+_75335604_75335633	0.00631584	FOXA3_FOXC2	ENST00000563393.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase
hg19_v2_chr8_+_92261516_92261555	0.00622873	FOXA3_FOXC2	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chr11_-_107582775_107582788	0.00485651	FOXA3_FOXC2	ENST00000305991.2|SLN|ENSG00000170290.3|sarcolipin
hg19_v2_chr18_-_3874271_3874337	0.00464848	FOXA3_FOXC2	ENST00000400149.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400155.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400150.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr11_-_46615498_46615675	0.00426938	FOXA3_FOXC2	ENST00000533727.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000534300.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000528950.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000526606.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1
hg19_v2_chr3_+_108855558_108855733	0.00425708	FOXA3_FOXC2	ENST00000467240.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000477643.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000479039.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000593799.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1
hg19_v2_chr1_+_174933899_174933955	0.00419172	FOXA3_FOXC2	ENST00000367688.3|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr4_+_76871883_76871883	0.00390908	FOXA3_FOXC2	ENST00000599764.1|AC110615.1|ENSG00000268788.1|Uncharacterized protein
hg19_v2_chr15_+_69854027_69854062	0.00381973	FOXA3_FOXC2	ENST00000498938.2|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr6_-_13621126_13621126	0.0036401	FOXA3_FOXC2	ENST00000600057.1|AL441883.1|ENSG00000268059.1|Uncharacterized protein
hg19_v2_chr2_+_220042933_220042985	0.00362192	FOXA3_FOXC2	ENST00000430297.2|FAM134A|ENSG00000144567.6|family with sequence similarity 134, member A
hg19_v2_chr19_+_50380917_50380938	0.00340656	FOXA3_FOXC2	ENST00000535102.2|TBC1D17|ENSG00000104946.6|TBC1 domain family, member 17
hg19_v2_chr6_+_44355257_44355315	0.00328561	FOXA3_FOXC2	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chr4_+_187187098_187187127	0.00288479	FOXA3_FOXC2	ENST00000403665.2|F11|ENSG00000088926.9|coagulation factor XI 	ENST00000264692.4|F11|ENSG00000088926.9|coagulation factor XI
hg19_v2_chr19_+_50380682_50380822	0.00204854	FOXA3_FOXC2	ENST00000221543.5|TBC1D17|ENSG00000104946.6|TBC1 domain family, member 17
hg19_v2_chrX_+_23352133_23352229	0.00165647	FOXA3_FOXC2	ENST00000379361.4|PTCHD1|ENSG00000165186.9|patched domain containing 1
hg19_v2_chr19_+_13906250_13906274	0.000787446	FOXA3_FOXC2	ENST00000254323.2|ZSWIM4|ENSG00000132003.5|zinc finger, SWIM-type containing 4
hg19_v2_chr14_-_99737822_99737861	0.000355223	FOXA3_FOXC2	ENST00000345514.2|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein) 	ENST00000443726.2|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein)
