hg19_v2_chr17_+_55333876_55333939	0.986381	AUGGCAC	ENST00000284073.2|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chr9_-_3525968_3526016	0.986067	AUGGCAC	ENST00000382004.3|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000302303.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000449190.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression)
hg19_v2_chr6_-_130031358_130031378	0.978029	AUGGCAC	ENST00000368149.2|ARHGAP18|ENSG00000146376.6|Rho GTPase activating protein 18
hg19_v2_chr16_+_57406368_57406392	0.902325	AUGGCAC	ENST00000006053.6|CX3CL1|ENSG00000006210.6|chemokine (C-X3-C motif) ligand 1 	ENST00000563383.1|CX3CL1|ENSG00000006210.6|chemokine (C-X3-C motif) ligand 1
hg19_v2_chrX_+_16964794_16964861	0.730847	AUGGCAC	ENST00000357277.3|REPS2|ENSG00000169891.13|RALBP1 associated Eps domain containing 2
hg19_v2_chr8_+_99076509_99076539	0.72143	AUGGCAC	ENST00000318528.3|C8orf47|ENSG00000177459.6|chromosome 8 open reading frame 47
hg19_v2_chr11_+_45907177_45907233	0.680429	AUGGCAC	ENST00000241014.2|MAPK8IP1|ENSG00000121653.7|mitogen-activated protein kinase 8 interacting protein 1
hg19_v2_chr12_+_93771659_93771710	0.596562	AUGGCAC	ENST00000337179.5|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4 	ENST00000415493.2|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4
hg19_v2_chr18_-_53255766_53255860	0.543485	AUGGCAC	ENST00000566286.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000566279.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000354452.3|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000356073.4|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr19_-_14316980_14316999	0.522765	AUGGCAC	ENST00000361434.3|LPHN1|ENSG00000072071.12|latrophilin 1 	ENST00000340736.6|LPHN1|ENSG00000072071.12|latrophilin 1
hg19_v2_chr18_+_67956135_67956144	0.518927	AUGGCAC	ENST00000397942.3|SOCS6|ENSG00000170677.5|suppressor of cytokine signaling 6
hg19_v2_chr1_-_169863016_169863109	0.510359	AUGGCAC	ENST00000367772.4|SCYL3|ENSG00000000457.9|SCY1-like 3 (S. cerevisiae) 	ENST00000367771.6|SCYL3|ENSG00000000457.9|SCY1-like 3 (S. cerevisiae)
hg19_v2_chr15_-_61521495_61521518	0.431674	AUGGCAC	ENST00000335670.6|RORA|ENSG00000069667.11|RAR-related orphan receptor A
hg19_v2_chr16_-_68482440_68482591	0.420266	AUGGCAC	ENST00000219334.5|SMPD3|ENSG00000103056.7|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)
hg19_v2_chr1_+_180601139_180601180	0.406248	AUGGCAC	ENST00000367590.4|XPR1|ENSG00000143324.9|xenotropic and polytropic retrovirus receptor 1 	ENST00000367589.3|XPR1|ENSG00000143324.9|xenotropic and polytropic retrovirus receptor 1
hg19_v2_chr17_+_29718642_29718656	0.399645	AUGGCAC	ENST00000325874.8|RAB11FIP4|ENSG00000131242.11|RAB11 family interacting protein 4 (class II)
hg19_v2_chr1_-_94374946_94374994	0.39696	AUGGCAC	ENST00000370238.3|GCLM|ENSG00000023909.5|glutamate-cysteine ligase, modifier subunit
hg19_v2_chr15_-_90645679_90645753	0.3834	AUGGCAC	ENST00000539790.1|IDH2|ENSG00000182054.5|isocitrate dehydrogenase 2 (NADP+), mitochondrial 	ENST00000559482.1|IDH2|ENSG00000182054.5|isocitrate dehydrogenase 2 (NADP+), mitochondrial 	ENST00000330062.3|IDH2|ENSG00000182054.5|isocitrate dehydrogenase 2 (NADP+), mitochondrial
hg19_v2_chr4_-_39640700_39640712	0.376194	AUGGCAC	ENST00000295958.5|SMIM14|ENSG00000163683.7|small integral membrane protein 14
hg19_v2_chr6_-_52926539_52926668	0.356592	AUGGCAC	ENST00000350082.5|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase 	ENST00000356971.3|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase
hg19_v2_chr2_-_157189180_157189290	0.354199	AUGGCAC	ENST00000539077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000424077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000426264.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000339562.4|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000421709.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2
hg19_v2_chr19_-_33555780_33555801	0.353084	AUGGCAC	ENST00000254260.3|RHPN2|ENSG00000131941.3|rhophilin, Rho GTPase binding protein 2 	ENST00000400226.4|RHPN2|ENSG00000131941.3|rhophilin, Rho GTPase binding protein 2
hg19_v2_chr7_+_69064300_69064342	0.33688	AUGGCAC	ENST00000342771.4|AUTS2|ENSG00000158321.11|autism susceptibility candidate 2
hg19_v2_chr1_-_225840747_225840860	0.33361	AUGGCAC	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr1_+_227058264_227058331	0.299522	AUGGCAC	ENST00000366783.3|PSEN2|ENSG00000143801.12|presenilin 2 (Alzheimer disease 4) 	ENST00000340188.4|PSEN2|ENSG00000143801.12|presenilin 2 (Alzheimer disease 4) 	ENST00000495488.1|PSEN2|ENSG00000143801.12|presenilin 2 (Alzheimer disease 4) 	ENST00000422240.2|PSEN2|ENSG00000143801.12|presenilin 2 (Alzheimer disease 4)
hg19_v2_chr4_+_88928777_88928822	0.297986	AUGGCAC	ENST00000237596.2|PKD2|ENSG00000118762.3|polycystic kidney disease 2 (autosomal dominant)
hg19_v2_chr5_+_142149955_142150000	0.295414	AUGGCAC	ENST00000378004.3|ARHGAP26|ENSG00000145819.11|Rho GTPase activating protein 26
hg19_v2_chr2_-_222436988_222437031	0.295158	AUGGCAC	ENST00000409854.1|EPHA4|ENSG00000116106.7|EPH receptor A4 	ENST00000281821.2|EPHA4|ENSG00000116106.7|EPH receptor A4 	ENST00000392071.4|EPHA4|ENSG00000116106.7|EPH receptor A4 	ENST00000443796.1|EPHA4|ENSG00000116106.7|EPH receptor A4
hg19_v2_chr12_-_12419703_12419811	0.294995	AUGGCAC	ENST00000543091.1|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6 	ENST00000261349.4|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6
hg19_v2_chr3_+_14444063_14444133	0.281865	AUGGCAC	ENST00000454876.2|SLC6A6|ENSG00000131389.12|solute carrier family 6 (neurotransmitter transporter), member 6 	ENST00000360861.3|SLC6A6|ENSG00000131389.12|solute carrier family 6 (neurotransmitter transporter), member 6 	ENST00000416216.2|SLC6A6|ENSG00000131389.12|solute carrier family 6 (neurotransmitter transporter), member 6
hg19_v2_chr6_+_107811162_107811196	0.278671	AUGGCAC	ENST00000317357.5|SOBP|ENSG00000112320.7|sine oculis binding protein homolog (Drosophila)
hg19_v2_chr2_+_179345173_179345221	0.273099	AUGGCAC	ENST00000234453.5|PLEKHA3|ENSG00000116095.6|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3
hg19_v2_chr14_+_105331596_105331656	0.265153	AUGGCAC	ENST00000556508.1|CEP170B|ENSG00000099814.11|centrosomal protein 170B 	ENST00000414716.3|CEP170B|ENSG00000099814.11|centrosomal protein 170B 	ENST00000453495.1|CEP170B|ENSG00000099814.11|centrosomal protein 170B 	ENST00000418279.1|CEP170B|ENSG00000099814.11|centrosomal protein 170B
hg19_v2_chr17_+_53342311_53342400	0.265111	AUGGCAC	ENST00000226067.5|HLF|ENSG00000108924.9|hepatic leukemia factor
hg19_v2_chr9_-_80646374_80646374	0.264316	AUGGCAC	ENST00000286548.4|GNAQ|ENSG00000156052.6|guanine nucleotide binding protein (G protein), q polypeptide
hg19_v2_chr18_-_47721447_47721474	0.260501	AUGGCAC	ENST00000285039.7|MYO5B|ENSG00000167306.14|myosin VB
hg19_v2_chr9_-_79520989_79521003	0.251612	AUGGCAC	ENST00000376713.3|PRUNE2|ENSG00000106772.13|prune homolog 2 (Drosophila) 	ENST00000376718.3|PRUNE2|ENSG00000106772.13|prune homolog 2 (Drosophila) 	ENST00000428286.1|PRUNE2|ENSG00000106772.13|prune homolog 2 (Drosophila)
hg19_v2_chr9_+_35161998_35162101	0.248622	AUGGCAC	ENST00000396787.1|UNC13B|ENSG00000198722.8|unc-13 homolog B (C. elegans) 	ENST00000378495.3|UNC13B|ENSG00000198722.8|unc-13 homolog B (C. elegans) 	ENST00000378496.4|UNC13B|ENSG00000198722.8|unc-13 homolog B (C. elegans)
hg19_v2_chr2_+_159313452_159313624	0.248344	AUGGCAC	ENST00000389757.3|PKP4|ENSG00000144283.17|plakophilin 4 	ENST00000389759.3|PKP4|ENSG00000144283.17|plakophilin 4
hg19_v2_chr17_-_27621125_27621143	0.242542	AUGGCAC	ENST00000579665.1|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2 	ENST00000225388.4|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2
hg19_v2_chr1_+_174769006_174769070	0.241679	AUGGCAC	ENST00000489615.1|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr13_-_31736027_31736064	0.22545	AUGGCAC	ENST00000380406.5|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1 	ENST00000320027.5|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1 	ENST00000380405.4|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chr1_+_92495528_92495604	0.225054	AUGGCAC	ENST00000370383.4|EPHX4|ENSG00000172031.6|epoxide hydrolase 4
hg19_v2_chr6_-_159239257_159239274	0.218786	AUGGCAC	ENST00000337147.7|EZR|ENSG00000092820.13|ezrin 	ENST00000392177.4|EZR|ENSG00000092820.13|ezrin
hg19_v2_chr1_+_20512568_20512629	0.213332	AUGGCAC	ENST00000375099.3|UBXN10|ENSG00000162543.5|UBX domain protein 10
hg19_v2_chrX_-_20284958_20285039	0.201865	AUGGCAC	ENST00000379565.3|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chr1_-_207224307_207224422	0.201141	AUGGCAC	ENST00000315927.4|YOD1|ENSG00000180667.6|YOD1 deubiquitinase
hg19_v2_chr5_-_81046922_81047072	0.193782	AUGGCAC	ENST00000514493.1|SSBP2|ENSG00000145687.11|single-stranded DNA binding protein 2 	ENST00000320672.4|SSBP2|ENSG00000145687.11|single-stranded DNA binding protein 2
hg19_v2_chr10_+_92980517_92980550	0.192282	AUGGCAC	ENST00000336126.5|PCGF5|ENSG00000180628.10|polycomb group ring finger 5
hg19_v2_chr16_+_19179549_19179622	0.19132	AUGGCAC	ENST00000355377.2|SYT17|ENSG00000103528.12|synaptotagmin XVII 	ENST00000568115.1|SYT17|ENSG00000103528.12|synaptotagmin XVII
hg19_v2_chr8_+_48920960_48921011	0.185166	AUGGCAC	ENST00000523111.2|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2 	ENST00000523432.1|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2 	ENST00000521346.1|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2 	ENST00000517630.1|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2
hg19_v2_chr8_+_110346546_110346619	0.184555	AUGGCAC	ENST00000521662.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000521688.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000520147.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila)
hg19_v2_chr5_+_102201430_102201478	0.181944	AUGGCAC	ENST00000438793.3|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000346918.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr10_-_52383644_52383743	0.181852	AUGGCAC	ENST00000361781.2|SGMS1|ENSG00000198964.9|sphingomyelin synthase 1
hg19_v2_chr10_+_70320413_70320413	0.175043	AUGGCAC	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr10_+_102821551_102821598	0.173402	AUGGCAC	ENST00000370200.5|KAZALD1|ENSG00000107821.10|Kazal-type serine peptidase inhibitor domain 1
hg19_v2_chr18_+_29671812_29671892	0.171365	AUGGCAC	ENST00000261593.3|RNF138|ENSG00000134758.9|ring finger protein 138, E3 ubiquitin protein ligase 	ENST00000578914.1|RNF138|ENSG00000134758.9|ring finger protein 138, E3 ubiquitin protein ligase
hg19_v2_chr15_+_77223960_77223994	0.17082	AUGGCAC	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr5_+_65222299_65222361	0.167386	AUGGCAC	ENST00000284037.5|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr15_+_57210818_57210930	0.166719	AUGGCAC	ENST00000438423.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000267811.5|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000452095.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000559609.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000333725.5|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr4_-_11431389_11431389	0.165022	AUGGCAC	ENST00000002596.5|HS3ST1|ENSG00000002587.5|heparan sulfate (glucosamine) 3-O-sulfotransferase 1
hg19_v2_chr1_+_15943995_15944014	0.160109	AUGGCAC	ENST00000480945.1|DDI2|ENSG00000197312.7|DNA-damage inducible 1 homolog 2 (S. cerevisiae)
hg19_v2_chr20_+_13976015_13976171	0.156243	AUGGCAC	ENST00000217246.4|MACROD2|ENSG00000172264.12|MACRO domain containing 2
hg19_v2_chr8_-_103876965_103877012	0.154475	AUGGCAC	ENST00000337198.5|AZIN1|ENSG00000155096.9|antizyme inhibitor 1
hg19_v2_chr5_-_137911049_137911133	0.150177	AUGGCAC	ENST00000297185.3|HSPA9|ENSG00000113013.8|heat shock 70kDa protein 9 (mortalin)
hg19_v2_chr10_+_22610124_22610188	0.145426	AUGGCAC	ENST00000376663.3|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chr2_-_161350305_161350391	0.144629	AUGGCAC	ENST00000348849.3|RBMS1|ENSG00000153250.13|RNA binding motif, single stranded interacting protein 1
hg19_v2_chr10_-_62704005_62704045	0.141661	AUGGCAC	ENST00000337910.5|RHOBTB1|ENSG00000072422.12|Rho-related BTB domain containing 1
hg19_v2_chr10_-_113943447_113943536	0.138216	AUGGCAC	ENST00000369425.1|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial 	ENST00000348367.4|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial 	ENST00000423155.1|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial
hg19_v2_chr1_-_235491462_235491534	0.138124	AUGGCAC	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr7_-_8301869_8301911	0.137431	AUGGCAC	ENST00000402384.3|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr9_+_33025209_33025279	0.135734	AUGGCAC	ENST00000330899.4|DNAJA1|ENSG00000086061.11|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENST00000544625.1|DNAJA1|ENSG00000086061.11|DnaJ (Hsp40) homolog, subfamily A, member 1
hg19_v2_chr4_+_154125565_154125626	0.134287	AUGGCAC	ENST00000338700.5|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr2_+_42396472_42396563	0.132088	AUGGCAC	ENST00000318522.5|EML4|ENSG00000143924.14|echinoderm microtubule associated protein like 4 	ENST00000402711.2|EML4|ENSG00000143924.14|echinoderm microtubule associated protein like 4
hg19_v2_chr4_+_26862400_26862416	0.129683	AUGGCAC	ENST00000467011.1|STIM2|ENSG00000109689.10|stromal interaction molecule 2 	ENST00000412829.2|STIM2|ENSG00000109689.10|stromal interaction molecule 2
hg19_v2_chr15_-_83316254_83316368	0.124515	AUGGCAC	ENST00000567678.1|CPEB1|ENSG00000214575.5|cytoplasmic polyadenylation element binding protein 1 	ENST00000450751.2|CPEB1|ENSG00000214575.5|cytoplasmic polyadenylation element binding protein 1
hg19_v2_chr5_-_59189545_59189625	0.122136	AUGGCAC	ENST00000340635.6|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr15_-_75744014_75744087	0.119246	AUGGCAC	ENST00000394947.3|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000565264.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A
hg19_v2_chr14_+_36295504_36295580	0.118641	AUGGCAC	ENST00000216807.7|BRMS1L|ENSG00000100916.9|breast cancer metastasis-suppressor 1-like
hg19_v2_chr11_+_125034586_125034604	0.117547	AUGGCAC	ENST00000298282.9|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr12_+_64798095_64798162	0.116999	AUGGCAC	ENST00000332707.5|XPOT|ENSG00000184575.7|exportin, tRNA
hg19_v2_chr8_-_57123815_57123867	0.115892	AUGGCAC	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr2_-_55920952_55921045	0.11519	AUGGCAC	ENST00000447944.2|PNPT1|ENSG00000138035.10|polyribonucleotide nucleotidyltransferase 1
hg19_v2_chr6_-_62996066_62996137	0.113458	AUGGCAC	ENST00000281156.4|KHDRBS2|ENSG00000112232.8|KH domain containing, RNA binding, signal transduction associated 2
hg19_v2_chr19_+_34745442_34745502	0.113002	AUGGCAC	ENST00000299505.6|KIAA0355|ENSG00000166398.8|KIAA0355 	ENST00000588470.1|KIAA0355|ENSG00000166398.8|KIAA0355 	ENST00000589583.1|KIAA0355|ENSG00000166398.8|KIAA0355 	ENST00000588338.2|KIAA0355|ENSG00000166398.8|KIAA0355
hg19_v2_chr6_+_87865262_87865339	0.111806	AUGGCAC	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr12_+_19282643_19282710	0.111772	AUGGCAC	ENST00000317589.4|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000355397.3|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000359180.3|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000309364.4|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000540972.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000429027.2|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr3_+_150804676_150804697	0.108222	AUGGCAC	ENST00000474524.1|MED12L|ENSG00000144893.8|mediator complex subunit 12-like 	ENST00000273432.4|MED12L|ENSG00000144893.8|mediator complex subunit 12-like
hg19_v2_chr9_-_114246635_114246676	0.107551	AUGGCAC	ENST00000338205.5|KIAA0368|ENSG00000136813.10|KIAA0368
hg19_v2_chr4_+_170541660_170541677	0.10697	AUGGCAC	ENST00000513761.1|CLCN3|ENSG00000109572.9|chloride channel, voltage-sensitive 3 	ENST00000347613.4|CLCN3|ENSG00000109572.9|chloride channel, voltage-sensitive 3
hg19_v2_chr17_+_46125707_46125746	0.105239	AUGGCAC	ENST00000584137.1|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000362042.3|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000585291.1|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000357480.5|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1
hg19_v2_chr3_+_152552685_152552736	0.1052	AUGGCAC	ENST00000305097.3|P2RY1|ENSG00000169860.4|purinergic receptor P2Y, G-protein coupled, 1
hg19_v2_chr1_-_93257951_93257981	0.104003	AUGGCAC	ENST00000543509.1|EVI5|ENSG00000067208.10|ecotropic viral integration site 5 	ENST00000370331.1|EVI5|ENSG00000067208.10|ecotropic viral integration site 5 	ENST00000540033.1|EVI5|ENSG00000067208.10|ecotropic viral integration site 5
hg19_v2_chr2_+_139259324_139259389	0.101257	AUGGCAC	ENST00000280098.4|SPOPL|ENSG00000144228.4|speckle-type POZ protein-like
hg19_v2_chr4_-_2264015_2264041	0.100224	AUGGCAC	ENST00000337190.2|MXD4|ENSG00000123933.10|MAX dimerization protein 4
hg19_v2_chr2_-_100106419_100106522	0.0970611	AUGGCAC	ENST00000393445.3|REV1|ENSG00000135945.5|REV1, polymerase (DNA directed) 	ENST00000258428.3|REV1|ENSG00000135945.5|REV1, polymerase (DNA directed)
hg19_v2_chr1_+_185014496_185014518	0.0968744	AUGGCAC	ENST00000367510.3|RNF2|ENSG00000121481.6|ring finger protein 2
hg19_v2_chr3_+_38495333_38495422	0.0941582	AUGGCAC	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr8_+_120220561_120220650	0.0935594	AUGGCAC	ENST00000276681.6|MAL2|ENSG00000147676.9|mal, T-cell differentiation protein 2 (gene/pseudogene)
hg19_v2_chr10_-_114206649_114206688	0.0922942	AUGGCAC	ENST00000369404.3|ZDHHC6|ENSG00000023041.7|zinc finger, DHHC-type containing 6 	ENST00000369405.3|ZDHHC6|ENSG00000023041.7|zinc finger, DHHC-type containing 6
hg19_v2_chr6_-_107436473_107436543	0.0914501	AUGGCAC	ENST00000369042.1|BEND3|ENSG00000178409.9|BEN domain containing 3
hg19_v2_chr17_-_60142609_60142657	0.0911302	AUGGCAC	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr20_+_3451650_3451729	0.0865748	AUGGCAC	ENST00000262919.5|ATRN|ENSG00000088812.13|attractin
hg19_v2_chr16_+_85646763_85646822	0.0831948	AUGGCAC	ENST00000411612.1|GSE1|ENSG00000131149.13|Gse1 coiled-coil protein 	ENST00000253458.7|GSE1|ENSG00000131149.13|Gse1 coiled-coil protein
hg19_v2_chr10_+_22605304_22605372	0.0823224	AUGGCAC	ENST00000475460.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000602390.1|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000456711.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000444869.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000489125.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough
hg19_v2_chr4_+_148538517_148538592	0.0821681	AUGGCAC	ENST00000296582.3|TMEM184C|ENSG00000164168.3|transmembrane protein 184C 	ENST00000508208.1|TMEM184C|ENSG00000164168.3|transmembrane protein 184C
hg19_v2_chr11_-_40315640_40315684	0.0818023	AUGGCAC	ENST00000278198.2|LRRC4C|ENSG00000148948.3|leucine rich repeat containing 4C
hg19_v2_chr3_+_183353356_183353450	0.0779216	AUGGCAC	ENST00000242810.6|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000493074.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000437402.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454495.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000473045.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000468101.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000427201.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000482138.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454652.2|KLHL24|ENSG00000114796.11|kelch-like family member 24
hg19_v2_chr10_+_114709999_114710031	0.0772947	AUGGCAC	ENST00000355995.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000545257.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000543371.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000536810.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000355717.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000538897.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000534894.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr9_-_98279241_98279339	0.0766754	AUGGCAC	ENST00000437951.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000375274.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000430669.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000468211.2|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr13_-_41240717_41240735	0.0762335	AUGGCAC	ENST00000379561.5|FOXO1|ENSG00000150907.6|forkhead box O1
hg19_v2_chr1_-_70820357_70820435	0.0752553	AUGGCAC	ENST00000370944.4|ANKRD13C|ENSG00000118454.8|ankyrin repeat domain 13C 	ENST00000262346.6|ANKRD13C|ENSG00000118454.8|ankyrin repeat domain 13C
hg19_v2_chr6_+_80341000_80341025	0.0727426	AUGGCAC	ENST00000369838.4|SH3BGRL2|ENSG00000198478.6|SH3 domain binding glutamic acid-rich protein like 2
hg19_v2_chr18_+_32073253_32073339	0.0721773	AUGGCAC	ENST00000283365.9|DTNA|ENSG00000134769.17|dystrobrevin, alpha 	ENST00000596745.1|DTNA|ENSG00000134769.17|dystrobrevin, alpha 	ENST00000315456.6|DTNA|ENSG00000134769.17|dystrobrevin, alpha
hg19_v2_chr12_-_122018859_122018941	0.071078	AUGGCAC	ENST00000536437.1|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B 	ENST00000377071.4|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B 	ENST00000538046.2|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B
hg19_v2_chr2_+_106361333_106361520	0.0699323	AUGGCAC	ENST00000233154.4|NCK2|ENSG00000071051.9|NCK adaptor protein 2 	ENST00000451463.2|NCK2|ENSG00000071051.9|NCK adaptor protein 2
hg19_v2_chr1_-_153895377_153895465	0.0695667	AUGGCAC	ENST00000368655.4|GATAD2B|ENSG00000143614.7|GATA zinc finger domain containing 2B
hg19_v2_chr11_-_77532050_77532066	0.0693526	AUGGCAC	ENST00000308488.6|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr1_+_151043070_151043110	0.068218	AUGGCAC	ENST00000368918.3|GABPB2|ENSG00000143458.7|GA binding protein transcription factor, beta subunit 2 	ENST00000368917.1|GABPB2|ENSG00000143458.7|GA binding protein transcription factor, beta subunit 2
hg19_v2_chr17_-_74733404_74733456	0.0664887	AUGGCAC	ENST00000508921.3|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2 	ENST00000583836.1|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2 	ENST00000358156.6|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2 	ENST00000392485.2|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2 	ENST00000359995.5|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2
hg19_v2_chr3_+_37903432_37903475	0.0664106	AUGGCAC	ENST00000443503.2|CTDSPL|ENSG00000144677.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
hg19_v2_chr1_+_215256467_215256622	0.0652352	AUGGCAC	ENST00000391894.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2 	ENST00000444842.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2
hg19_v2_chr13_+_42622781_42622889	0.0646984	AUGGCAC	ENST00000337343.4|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta 	ENST00000261491.5|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta 	ENST00000379274.2|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta
hg19_v2_chr14_-_68283291_68283323	0.0644208	AUGGCAC	ENST00000555452.1|ZFYVE26|ENSG00000072121.11|zinc finger, FYVE domain containing 26 	ENST00000347230.4|ZFYVE26|ENSG00000072121.11|zinc finger, FYVE domain containing 26
hg19_v2_chr7_-_16685422_16685448	0.0642011	AUGGCAC	ENST00000306999.2|ANKMY2|ENSG00000106524.4|ankyrin repeat and MYND domain containing 2
hg19_v2_chr2_+_148602058_148602185	0.0623182	AUGGCAC	ENST00000241416.7|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000535787.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000404590.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA
hg19_v2_chr8_+_117963190_117963224	0.0610492	AUGGCAC	ENST00000427715.2|SLC30A8|ENSG00000164756.8|solute carrier family 30 (zinc transporter), member 8
hg19_v2_chr7_-_111846435_111846471	0.061004	AUGGCAC	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr11_-_60929074_60929172	0.0599542	AUGGCAC	ENST00000301765.5|VPS37C|ENSG00000167987.6|vacuolar protein sorting 37 homolog C (S. cerevisiae)
hg19_v2_chr11_+_18344106_18344143	0.0595881	AUGGCAC	ENST00000534641.1|GTF2H1|ENSG00000110768.7|general transcription factor IIH, polypeptide 1, 62kDa 	ENST00000525831.1|GTF2H1|ENSG00000110768.7|general transcription factor IIH, polypeptide 1, 62kDa 	ENST00000265963.4|GTF2H1|ENSG00000110768.7|general transcription factor IIH, polypeptide 1, 62kDa
hg19_v2_chr4_+_79697495_79697538	0.0561364	AUGGCAC	ENST00000502871.1|BMP2K|ENSG00000138756.13|BMP2 inducible kinase 	ENST00000335016.5|BMP2K|ENSG00000138756.13|BMP2 inducible kinase
hg19_v2_chr6_-_91006461_91006517	0.055403	AUGGCAC	ENST00000257749.4|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2 	ENST00000343122.3|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2 	ENST00000406998.2|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2 	ENST00000453877.1|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2
hg19_v2_chr15_-_35280426_35280503	0.0535373	AUGGCAC	ENST00000559564.1|ZNF770|ENSG00000198146.4|zinc finger protein 770 	ENST00000356321.4|ZNF770|ENSG00000198146.4|zinc finger protein 770
hg19_v2_chr3_+_140660634_140660729	0.0535158	AUGGCAC	ENST00000446041.2|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 	ENST00000507429.1|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 	ENST00000324194.6|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36
hg19_v2_chr6_+_88182643_88182722	0.0526053	AUGGCAC	ENST00000369556.3|SLC35A1|ENSG00000164414.12|solute carrier family 35 (CMP-sialic acid transporter), member A1 	ENST00000544441.1|SLC35A1|ENSG00000164414.12|solute carrier family 35 (CMP-sialic acid transporter), member A1 	ENST00000369552.4|SLC35A1|ENSG00000164414.12|solute carrier family 35 (CMP-sialic acid transporter), member A1 	ENST00000369557.5|SLC35A1|ENSG00000164414.12|solute carrier family 35 (CMP-sialic acid transporter), member A1
hg19_v2_chr5_-_32174369_32174458	0.0523744	AUGGCAC	ENST00000265070.6|GOLPH3|ENSG00000113384.9|golgi phosphoprotein 3 (coat-protein)
hg19_v2_chr5_+_134181625_134181713	0.0501155	AUGGCAC	ENST00000394976.3|C5orf24|ENSG00000181904.8|chromosome 5 open reading frame 24
hg19_v2_chrX_+_12993202_12993239	0.0499195	AUGGCAC	ENST00000451311.2|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked 	ENST00000380636.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr11_+_61447845_61447910	0.0494383	AUGGCAC	ENST00000257215.5|DAGLA|ENSG00000134780.5|diacylglycerol lipase, alpha
hg19_v2_chr17_+_20059302_20059342	0.0489354	AUGGCAC	ENST00000395530.2|SPECC1|ENSG00000128487.12|sperm antigen with calponin homology and coiled-coil domains 1
hg19_v2_chr5_+_148960931_148961073	0.0486997	AUGGCAC	ENST00000333677.6|ARHGEF37|ENSG00000183111.7|Rho guanine nucleotide exchange factor (GEF) 37
hg19_v2_chr1_-_160254913_160254943	0.047677	AUGGCAC	ENST00000440949.3|PEX19|ENSG00000162735.14|peroxisomal biogenesis factor 19 	ENST00000608310.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000556710.1|DCAF8|ENSG00000258465.2|DDB1- and CUL4-associated factor 8  	ENST00000368072.5|PEX19|ENSG00000162735.14|peroxisomal biogenesis factor 19
hg19_v2_chr5_-_133561752_133561833	0.0474504	AUGGCAC	ENST00000519718.1|CTD-2410N18.5|ENSG00000272772.1|S-phase kinase-associated protein 1  	ENST00000481195.1|PPP2CA|ENSG00000113575.5|protein phosphatase 2, catalytic subunit, alpha isozyme
hg19_v2_chr14_+_79745746_79745762	0.0470653	AUGGCAC	ENST00000281127.7|NRXN3|ENSG00000021645.13|neurexin 3
hg19_v2_chr7_+_138145076_138145116	0.0464338	AUGGCAC	ENST00000343526.4|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr11_-_47198380_47198448	0.0461892	AUGGCAC	ENST00000419701.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000526342.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000528444.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000530596.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525398.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000319543.6|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000426335.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000527927.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525314.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2
hg19_v2_chr12_+_27396901_27397108	0.0445267	AUGGCAC	ENST00000541191.1|STK38L|ENSG00000211455.3|serine/threonine kinase 38 like 	ENST00000389032.3|STK38L|ENSG00000211455.3|serine/threonine kinase 38 like
hg19_v2_chr3_-_33481835_33481905	0.0441998	AUGGCAC	ENST00000283629.3|UBP1|ENSG00000153560.7|upstream binding protein 1 (LBP-1a)
hg19_v2_chr9_+_82186872_82186898	0.0432806	AUGGCAC	ENST00000376544.3|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000376520.4|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr16_-_75498553_75498635	0.0424595	AUGGCAC	ENST00000569276.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000357613.4|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000561878.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000567194.1|RP11-77K12.1|ENSG00000261717.1|Uncharacterized protein  	ENST00000566980.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A
hg19_v2_chr3_+_186501336_186501386	0.0408571	AUGGCAC	ENST00000323963.5|EIF4A2|ENSG00000156976.10|eukaryotic translation initiation factor 4A2 	ENST00000440191.2|EIF4A2|ENSG00000156976.10|eukaryotic translation initiation factor 4A2 	ENST00000356531.5|EIF4A2|ENSG00000156976.10|eukaryotic translation initiation factor 4A2
hg19_v2_chr11_-_73309228_73309257	0.039766	AUGGCAC	ENST00000356467.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A 	ENST00000064778.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A
hg19_v2_chr3_-_116164306_116164380	0.0395301	AUGGCAC	ENST00000490035.2|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr8_+_41348072_41348112	0.0395201	AUGGCAC	ENST00000405786.2|GOLGA7|ENSG00000147533.12|golgin A7
hg19_v2_chr7_-_71801980_71802013	0.0390834	AUGGCAC	ENST00000329008.5|CALN1|ENSG00000183166.6|calneuron 1
hg19_v2_chr15_+_64388166_64388225	0.0378726	AUGGCAC	ENST00000353874.4|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000261889.5|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000559844.1|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000561026.1|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000558040.1|SNX1|ENSG00000028528.10|sorting nexin 1
hg19_v2_chr13_-_84456527_84456541	0.0373181	AUGGCAC	ENST00000377084.2|SLITRK1|ENSG00000178235.6|SLIT and NTRK-like family, member 1
hg19_v2_chr2_+_137523086_137523120	0.0368285	AUGGCAC	ENST00000409968.1|THSD7B|ENSG00000144229.7|thrombospondin, type I, domain containing 7B
hg19_v2_chr2_+_219264466_219264488	0.0359293	AUGGCAC	ENST00000273062.2|CTDSP1|ENSG00000144579.3|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
hg19_v2_chr22_+_40573921_40573946	0.0347312	AUGGCAC	ENST00000454349.2|TNRC6B|ENSG00000100354.16|trinucleotide repeat containing 6B 	ENST00000335727.9|TNRC6B|ENSG00000100354.16|trinucleotide repeat containing 6B
hg19_v2_chr12_+_69864129_69864222	0.03439	AUGGCAC	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr13_+_20532807_20532841	0.0342144	AUGGCAC	ENST00000382869.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2 	ENST00000382881.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr2_+_32390925_32390941	0.0340929	AUGGCAC	ENST00000440718.1|SLC30A6|ENSG00000152683.10|solute carrier family 30 (zinc transporter), member 6 	ENST00000379343.2|SLC30A6|ENSG00000152683.10|solute carrier family 30 (zinc transporter), member 6 	ENST00000282587.5|SLC30A6|ENSG00000152683.10|solute carrier family 30 (zinc transporter), member 6 	ENST00000435660.1|SLC30A6|ENSG00000152683.10|solute carrier family 30 (zinc transporter), member 6 	ENST00000538303.1|SLC30A6|ENSG00000152683.10|solute carrier family 30 (zinc transporter), member 6 	ENST00000357055.3|SLC30A6|ENSG00000152683.10|solute carrier family 30 (zinc transporter), member 6 	ENST00000406369.1|SLC30A6|ENSG00000152683.10|solute carrier family 30 (zinc transporter), member 6
hg19_v2_chr1_+_70671363_70671428	0.0332597	AUGGCAC	ENST00000370951.1|SRSF11|ENSG00000116754.9|serine/arginine-rich splicing factor 11 	ENST00000370950.3|SRSF11|ENSG00000116754.9|serine/arginine-rich splicing factor 11 	ENST00000405432.1|SRSF11|ENSG00000116754.9|serine/arginine-rich splicing factor 11 	ENST00000454435.2|SRSF11|ENSG00000116754.9|serine/arginine-rich splicing factor 11
hg19_v2_chr21_-_27945562_27945618	0.0308536	AUGGCAC	ENST00000299340.4|CYYR1|ENSG00000166265.7|cysteine/tyrosine-rich 1 	ENST00000435845.2|CYYR1|ENSG00000166265.7|cysteine/tyrosine-rich 1
hg19_v2_chr9_-_127952032_127952098	0.029809	AUGGCAC	ENST00000456642.1|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373546.3|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373547.4|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit
hg19_v2_chr12_-_16761007_16761080	0.0286976	AUGGCAC	ENST00000354662.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2) 	ENST00000441439.2|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr12_+_67663056_67663067	0.0284931	AUGGCAC	ENST00000545606.1|CAND1|ENSG00000111530.8|cullin-associated and neddylation-dissociated 1
hg19_v2_chr1_+_27719148_27719184	0.0267568	AUGGCAC	ENST00000374024.3|GPR3|ENSG00000181773.6|G protein-coupled receptor 3
hg19_v2_chr11_-_62572901_62572964	0.0259938	AUGGCAC	ENST00000439713.2|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000531131.1|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000530875.1|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000531709.2|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000294172.2|NXF1|ENSG00000162231.9|nuclear RNA export factor 1
hg19_v2_chr14_+_102228123_102228237	0.0251906	AUGGCAC	ENST00000422945.2|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000554442.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000556260.2|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000328724.5|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000557268.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr2_+_30369807_30369847	0.0244558	AUGGCAC	ENST00000379520.3|YPEL5|ENSG00000119801.8|yippee-like 5 (Drosophila) 	ENST00000379519.3|YPEL5|ENSG00000119801.8|yippee-like 5 (Drosophila) 	ENST00000261353.4|YPEL5|ENSG00000119801.8|yippee-like 5 (Drosophila)
hg19_v2_chr1_+_193091080_193091222	0.0225518	AUGGCAC	ENST00000367435.3|CDC73|ENSG00000134371.9|cell division cycle 73
hg19_v2_chr8_-_18871159_18871201	0.0216106	AUGGCAC	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr6_-_105585022_105585112	0.0208585	AUGGCAC	ENST00000314641.5|BVES|ENSG00000112276.9|blood vessel epicardial substance
hg19_v2_chr1_-_236767779_236767836	0.0205394	AUGGCAC	ENST00000366579.1|HEATR1|ENSG00000119285.6|HEAT repeat containing 1 	ENST00000366582.3|HEATR1|ENSG00000119285.6|HEAT repeat containing 1 	ENST00000366581.2|HEATR1|ENSG00000119285.6|HEAT repeat containing 1
hg19_v2_chr11_-_82782861_82782949	0.0204539	AUGGCAC	ENST00000524635.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000526205.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000527633.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533486.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533276.2|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr1_-_24306798_24306828	0.0202609	AUGGCAC	ENST00000374452.5|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000492112.2|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000343255.5|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000344989.6|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10
hg19_v2_chr17_-_37607497_37607539	0.0198749	AUGGCAC	ENST00000394287.3|MED1|ENSG00000125686.7|mediator complex subunit 1 	ENST00000300651.6|MED1|ENSG00000125686.7|mediator complex subunit 1
hg19_v2_chr9_-_135819987_135820020	0.0167114	AUGGCAC	ENST00000298552.3|TSC1|ENSG00000165699.9|tuberous sclerosis 1 	ENST00000403810.1|TSC1|ENSG00000165699.9|tuberous sclerosis 1
hg19_v2_chr2_+_204192942_204193038	0.0157086	AUGGCAC	ENST00000295851.5|ABI2|ENSG00000138443.11|abl-interactor 2 	ENST00000261017.5|ABI2|ENSG00000138443.11|abl-interactor 2
hg19_v2_chr5_-_45696253_45696427	0.0153977	AUGGCAC	ENST00000303230.4|HCN1|ENSG00000164588.4|hyperpolarization activated cyclic nucleotide-gated potassium channel 1
hg19_v2_chr7_-_72936531_72936602	0.0147524	AUGGCAC	ENST00000339594.4|BAZ1B|ENSG00000009954.6|bromodomain adjacent to zinc finger domain, 1B
hg19_v2_chr17_-_58603568_58603610	0.0136719	AUGGCAC	ENST00000083182.3|APPBP2|ENSG00000062725.5|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
hg19_v2_chr3_-_160283348_160283376	0.0118735	AUGGCAC	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr12_+_72666407_72666463	0.0116118	AUGGCAC	ENST00000261180.4|TRHDE|ENSG00000072657.4|thyrotropin-releasing hormone degrading enzyme
hg19_v2_chr2_+_169312350_169312372	0.0113507	AUGGCAC	ENST00000305747.6|CERS6|ENSG00000172292.10|ceramide synthase 6
hg19_v2_chr11_+_18230727_18230755	0.0112451	AUGGCAC	ENST00000527059.1|RP11-113D6.10|ENSG00000189332.4|Putative mitochondrial carrier protein LOC494141
hg19_v2_chr5_+_153418466_153418565	0.00954096	AUGGCAC	ENST00000522782.1|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000439768.2|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000436816.1|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000322602.5|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000522177.1|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000520899.1|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3
hg19_v2_chr3_-_150264272_150264428	0.00935008	AUGGCAC	ENST00000491660.1|SERP1|ENSG00000120742.6|stress-associated endoplasmic reticulum protein 1 	ENST00000487153.1|SERP1|ENSG00000120742.6|stress-associated endoplasmic reticulum protein 1 	ENST00000239944.2|SERP1|ENSG00000120742.6|stress-associated endoplasmic reticulum protein 1
hg19_v2_chr6_+_131148538_131148554	0.00859395	AUGGCAC	ENST00000541421.2|SMLR1|ENSG00000256162.2|small leucine-rich protein 1
hg19_v2_chr7_+_20370746_20370778	0.00745653	AUGGCAC	ENST00000222573.4|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr2_+_206547215_206547232	0.00744463	AUGGCAC	ENST00000360409.3|NRP2|ENSG00000118257.12|neuropilin 2 	ENST00000540178.1|NRP2|ENSG00000118257.12|neuropilin 2 	ENST00000540841.1|NRP2|ENSG00000118257.12|neuropilin 2 	ENST00000355117.4|NRP2|ENSG00000118257.12|neuropilin 2 	ENST00000450507.1|NRP2|ENSG00000118257.12|neuropilin 2 	ENST00000417189.1|NRP2|ENSG00000118257.12|neuropilin 2
hg19_v2_chr4_-_146859623_146859669	0.00728737	AUGGCAC	ENST00000379448.4|ZNF827|ENSG00000151612.11|zinc finger protein 827 	ENST00000513320.1|ZNF827|ENSG00000151612.11|zinc finger protein 827
hg19_v2_chr4_-_129208940_129208976	0.00700434	AUGGCAC	ENST00000296425.5|PGRMC2|ENSG00000164040.12|progesterone receptor membrane component 2
hg19_v2_chr5_+_138678131_138678169	0.00678743	AUGGCAC	ENST00000394795.2|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000510080.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr19_-_47975417_47975441	0.00664854	AUGGCAC	ENST00000236877.6|SLC8A2|ENSG00000118160.9|solute carrier family 8 (sodium/calcium exchanger), member 2
hg19_v2_chr2_-_176032843_176032941	0.00492066	AUGGCAC	ENST00000392544.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000409499.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000426833.3|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000392543.2|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000538946.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000487334.2|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000409833.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000409635.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000264110.2|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000345739.5|ATF2|ENSG00000115966.12|activating transcription factor 2
hg19_v2_chr8_+_42010464_42010662	0.00360182	AUGGCAC	ENST00000518421.1|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit 	ENST00000174653.3|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit 	ENST00000396926.3|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit 	ENST00000521280.1|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit 	ENST00000522288.1|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit
hg19_v2_chr6_+_111195973_111195994	0.00327791	AUGGCAC	ENST00000368885.3|AMD1|ENSG00000123505.10|adenosylmethionine decarboxylase 1 	ENST00000368882.3|AMD1|ENSG00000123505.10|adenosylmethionine decarboxylase 1 	ENST00000451850.2|AMD1|ENSG00000123505.10|adenosylmethionine decarboxylase 1 	ENST00000368877.5|AMD1|ENSG00000123505.10|adenosylmethionine decarboxylase 1
hg19_v2_chr17_+_73043301_73043347	0.00252478	AUGGCAC	ENST00000322444.6|KCTD2|ENSG00000180901.6|potassium channel tetramerization domain containing 2
hg19_v2_chr5_+_118407053_118407239	0.00201871	AUGGCAC	ENST00000311085.8|DMXL1|ENSG00000172869.10|Dmx-like 1 	ENST00000539542.1|DMXL1|ENSG00000172869.10|Dmx-like 1
