hg19_v2_chr4_-_57524061_57524074	1.94978	AIRE	ENST00000508121.1|HOPX|ENSG00000171476.17|HOP homeobox
hg19_v2_chr12_-_25101920_25102077	1.33888	AIRE	ENST00000539780.1|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic 	ENST00000546285.1|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic 	ENST00000342945.5|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic
hg19_v2_chr8_+_54764346_54764460	1.15567	AIRE	ENST00000297313.3|RGS20|ENSG00000147509.9|regulator of G-protein signaling 20 	ENST00000344277.6|RGS20|ENSG00000147509.9|regulator of G-protein signaling 20
hg19_v2_chr21_-_44495919_44495953	0.914491	AIRE	ENST00000398158.1|CBS|ENSG00000160200.13|cystathionine-beta-synthase
hg19_v2_chr12_+_75874984_75875053	0.872475	AIRE	ENST00000550491.1|GLIPR1|ENSG00000139278.5|GLI pathogenesis-related 1
hg19_v2_chr14_-_55658323_55658396	0.808838	AIRE	ENST00000554067.1|DLGAP5|ENSG00000126787.8|discs, large (Drosophila) homolog-associated protein 5 	ENST00000247191.2|DLGAP5|ENSG00000126787.8|discs, large (Drosophila) homolog-associated protein 5
hg19_v2_chr14_-_55658252_55658321	0.808341	AIRE	ENST00000395425.2|DLGAP5|ENSG00000126787.8|discs, large (Drosophila) homolog-associated protein 5
hg19_v2_chr21_-_44495964_44496055	0.802868	AIRE	ENST00000398168.1|CBS|ENSG00000160200.13|cystathionine-beta-synthase 	ENST00000398165.3|CBS|ENSG00000160200.13|cystathionine-beta-synthase
hg19_v2_chr21_+_30502806_30502989	0.792951	AIRE	ENST00000399928.1|MAP3K7CL|ENSG00000156265.11|MAP3K7 C-terminal like 	ENST00000399926.1|MAP3K7CL|ENSG00000156265.11|MAP3K7 C-terminal like
hg19_v2_chr20_+_44637526_44637554	0.787805	AIRE	ENST00000372330.3|MMP9|ENSG00000100985.7|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
hg19_v2_chr12_+_75874580_75874661	0.772749	AIRE	ENST00000456650.3|GLIPR1|ENSG00000139278.5|GLI pathogenesis-related 1
hg19_v2_chr1_+_165864821_165864850	0.771384	AIRE	ENST00000470820.1|UCK2|ENSG00000143179.8|uridine-cytidine kinase 2
hg19_v2_chr21_+_39644214_39644219	0.769848	AIRE	ENST00000438657.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr16_+_11439286_11439328	0.758753	AIRE	ENST00000312499.5|RMI2|ENSG00000175643.7|RecQ mediated genome instability 2 	ENST00000576027.1|RMI2|ENSG00000175643.7|RecQ mediated genome instability 2
hg19_v2_chr21_+_39644305_39644351	0.750926	AIRE	ENST00000398930.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr21_+_39644172_39644185	0.724667	AIRE	ENST00000398932.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr11_+_35211511_35211557	0.719333	AIRE	ENST00000524922.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr21_+_39644395_39644454	0.713733	AIRE	ENST00000398934.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr4_-_104119528_104119570	0.713139	AIRE	ENST00000380026.3|CENPE|ENSG00000138778.7|centromere protein E, 312kDa 	ENST00000503705.1|CENPE|ENSG00000138778.7|centromere protein E, 312kDa 	ENST00000265148.3|CENPE|ENSG00000138778.7|centromere protein E, 312kDa
hg19_v2_chr17_+_7210294_7210330	0.699286	AIRE	ENST00000336452.7|EIF5A|ENSG00000132507.13|eukaryotic translation initiation factor 5A
hg19_v2_chr12_+_75874460_75874549	0.613369	AIRE	ENST00000266659.3|GLIPR1|ENSG00000139278.5|GLI pathogenesis-related 1
hg19_v2_chr9_-_70178815_70178815	0.564452	AIRE	ENST00000377420.1|FOXD4L5|ENSG00000204779.2|forkhead box D4-like 5
hg19_v2_chr6_-_39290744_39290794	0.556419	AIRE	ENST00000507712.1|KCNK16|ENSG00000095981.6|potassium channel, subfamily K, member 16
hg19_v2_chr12_-_11139511_11139511	0.548792	AIRE	ENST00000506868.1|TAS2R50|ENSG00000212126.3|taste receptor, type 2, member 50
hg19_v2_chr9_+_42717234_42717234	0.544823	AIRE	ENST00000377590.1|FOXD4L2|ENSG00000204828.2|forkhead box D4-like 2
hg19_v2_chr1_-_161208013_161208092	0.517734	AIRE	ENST00000515452.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000367983.4|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3
hg19_v2_chr9_-_70429731_70429731	0.51223	AIRE	ENST00000377413.1|FOXD4L4|ENSG00000184659.4|forkhead box D4-like 4
hg19_v2_chr16_+_32077386_32077386	0.504979	AIRE	ENST00000354689.6|IGHV3OR16-9|ENSG00000270472.1|immunoglobulin heavy variable 3/OR16-9 (non-functional)
hg19_v2_chr5_-_77844974_77844994	0.473983	AIRE	ENST00000515007.2|LHFPL2|ENSG00000145685.9|lipoma HMGIC fusion partner-like 2
hg19_v2_chr9_-_113761720_113761756	0.456092	AIRE	ENST00000541779.1|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1 	ENST00000374430.2|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr8_-_7309887_7309887	0.446309	AIRE	ENST00000458665.1|SPAG11B|ENSG00000164871.13|sperm associated antigen 11B 	ENST00000528168.1|SPAG11B|ENSG00000164871.13|sperm associated antigen 11B
hg19_v2_chr15_-_99789736_99789820	0.434574	AIRE	ENST00000560235.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000394132.2|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000560860.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000558078.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000394136.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000262074.4|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000558613.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000394130.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000560772.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23
hg19_v2_chr19_+_45418067_45418126	0.429485	AIRE	ENST00000589078.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000586638.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chrX_-_49041242_49041351	0.422973	AIRE	ENST00000453382.1|PRICKLE3|ENSG00000012211.8|prickle homolog 3 (Drosophila) 	ENST00000540849.1|PRICKLE3|ENSG00000012211.8|prickle homolog 3 (Drosophila) 	ENST00000536904.1|PRICKLE3|ENSG00000012211.8|prickle homolog 3 (Drosophila) 	ENST00000432913.1|PRICKLE3|ENSG00000012211.8|prickle homolog 3 (Drosophila)
hg19_v2_chr2_-_225811747_225811796	0.416375	AIRE	ENST00000409592.3|DOCK10|ENSG00000135905.14|dedicator of cytokinesis 10
hg19_v2_chr3_-_121468513_121468599	0.403091	AIRE	ENST00000494517.1|GOLGB1|ENSG00000173230.11|golgin B1 	ENST00000393667.3|GOLGB1|ENSG00000173230.11|golgin B1
hg19_v2_chr4_-_120222076_120222076	0.400798	AIRE	ENST00000504110.1|C4orf3|ENSG00000164096.10|chromosome 4 open reading frame 3
hg19_v2_chr16_+_446713_446769	0.395576	AIRE	ENST00000397722.1|NME4|ENSG00000103202.8|NME/NM23 nucleoside diphosphate kinase 4 	ENST00000454619.1|NME4|ENSG00000103202.8|NME/NM23 nucleoside diphosphate kinase 4
hg19_v2_chr3_-_121468602_121468617	0.393812	AIRE	ENST00000340645.5|GOLGB1|ENSG00000173230.11|golgin B1
hg19_v2_chr8_+_7716700_7716700	0.389448	AIRE	ENST00000454911.2|SPAG11A|ENSG00000178287.13|sperm associated antigen 11A 	ENST00000326625.5|SPAG11A|ENSG00000178287.13|sperm associated antigen 11A
hg19_v2_chr10_-_75682535_75682535	0.384402	AIRE	ENST00000409178.1|C10orf55|ENSG00000222047.4|chromosome 10 open reading frame 55
hg19_v2_chr19_+_45417812_45417869	0.380412	AIRE	ENST00000592535.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr17_-_39150385_39150417	0.379361	AIRE	ENST00000391586.1|KRTAP3-3|ENSG00000212899.1|keratin associated protein 3-3
hg19_v2_chr19_-_48753064_48753095	0.360185	AIRE	ENST00000520153.1|CARD8|ENSG00000105483.12|caspase recruitment domain family, member 8 	ENST00000357778.5|CARD8|ENSG00000105483.12|caspase recruitment domain family, member 8 	ENST00000520015.1|CARD8|ENSG00000105483.12|caspase recruitment domain family, member 8
hg19_v2_chr22_+_36649056_36649164	0.354026	AIRE	ENST00000397278.3|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000422706.1|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000426053.1|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000319136.4|APOL1|ENSG00000100342.16|apolipoprotein L, 1
hg19_v2_chr2_-_136633940_136634022	0.353703	AIRE	ENST00000264156.2|MCM6|ENSG00000076003.4|minichromosome maintenance complex component 6
hg19_v2_chr12_+_10658489_10658489	0.34273	AIRE	ENST00000538173.1|EIF2S3L|ENSG00000180574.3|Putative eukaryotic translation initiation factor 2 subunit 3-like protein
hg19_v2_chr19_+_45417921_45417970	0.340135	AIRE	ENST00000252491.4|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000592885.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000589781.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr14_-_106668095_106668116	0.335715	AIRE	ENST00000390606.2|IGHV3-20|ENSG00000211946.2|immunoglobulin heavy variable 3-20
hg19_v2_chr20_-_43150601_43150751	0.334955	AIRE	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr20_+_44036900_44036984	0.332827	AIRE	ENST00000443296.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr8_+_128748308_128748330	0.331353	AIRE	ENST00000377970.2|MYC|ENSG00000136997.10|v-myc avian myelocytomatosis viral oncogene homolog
hg19_v2_chr14_-_107283278_107283282	0.328256	AIRE	ENST00000390639.2|IGHV7-81|ENSG00000211979.2|immunoglobulin heavy variable 7-81 (non-functional)
hg19_v2_chrM_-_14670_14676	0.323914	AIRE	ENST00000361681.2|MT-ND6|ENSG00000198695.2|mitochondrially encoded NADH dehydrogenase 6
hg19_v2_chr7_-_36764142_36764157	0.323582	AIRE	ENST00000258749.5|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil) 	ENST00000535891.1|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil)
hg19_v2_chr10_-_101841588_101841634	0.322315	AIRE	ENST00000370418.3|CPN1|ENSG00000120054.7|carboxypeptidase N, polypeptide 1
hg19_v2_chr2_-_208994548_208994554	0.308855	AIRE	ENST00000282141.3|CRYGC|ENSG00000163254.4|crystallin, gamma C
hg19_v2_chr1_-_161207986_161208000	0.307668	AIRE	ENST00000506209.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000367980.2|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3
hg19_v2_chr14_-_106967788_106967788	0.307139	AIRE	ENST00000390622.2|IGHV1-46|ENSG00000211962.2|immunoglobulin heavy variable 1-46
hg19_v2_chr12_-_11287243_11287243	0.306046	AIRE	ENST00000539585.1|TAS2R30|ENSG00000256188.1|taste receptor, type 2, member 30
hg19_v2_chr2_-_202508169_202508263	0.303593	AIRE	ENST00000409883.2|TMEM237|ENSG00000155755.14|transmembrane protein 237
hg19_v2_chr12_+_20848486_20848542	0.296329	AIRE	ENST00000545102.1|SLCO1C1|ENSG00000139155.4|solute carrier organic anion transporter family, member 1C1
hg19_v2_chr19_-_23869970_23869991	0.293808	AIRE	ENST00000601010.1|ZNF675|ENSG00000197372.5|zinc finger protein 675
hg19_v2_chr19_-_59084922_59084947	0.285863	AIRE	ENST00000215057.2|MZF1|ENSG00000099326.4|myeloid zinc finger 1 	ENST00000599369.1|MZF1|ENSG00000099326.4|myeloid zinc finger 1
hg19_v2_chr1_+_248201474_248201474	0.280215	AIRE	ENST00000366479.2|OR2L2|ENSG00000203663.2|olfactory receptor, family 2, subfamily L, member 2
hg19_v2_chr8_-_16043780_16043783	0.277144	AIRE	ENST00000445506.2|MSR1|ENSG00000038945.10|macrophage scavenger receptor 1
hg19_v2_chr20_+_44036620_44036658	0.276382	AIRE	ENST00000372710.3|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr14_-_75330537_75330537	0.273427	AIRE	ENST00000556084.2|PROX2|ENSG00000119608.8|prospero homeobox 2 	ENST00000556489.2|PROX2|ENSG00000119608.8|prospero homeobox 2 	ENST00000445876.1|PROX2|ENSG00000119608.8|prospero homeobox 2
hg19_v2_chr9_+_90112117_90112164	0.271409	AIRE	ENST00000358077.5|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr4_-_114682936_114683083	0.270218	AIRE	ENST00000454265.2|CAMK2D|ENSG00000145349.12|calcium/calmodulin-dependent protein kinase II delta 	ENST00000429180.1|CAMK2D|ENSG00000145349.12|calcium/calmodulin-dependent protein kinase II delta 	ENST00000418639.2|CAMK2D|ENSG00000145349.12|calcium/calmodulin-dependent protein kinase II delta 	ENST00000394526.2|CAMK2D|ENSG00000145349.12|calcium/calmodulin-dependent protein kinase II delta 	ENST00000296402.5|CAMK2D|ENSG00000145349.12|calcium/calmodulin-dependent protein kinase II delta
hg19_v2_chr16_+_50059125_50059180	0.268787	AIRE	ENST00000427478.2|CNEP1R1|ENSG00000205423.7|CTD nuclear envelope phosphatase 1 regulatory subunit 1
hg19_v2_chr7_-_36764004_36764059	0.266277	AIRE	ENST00000431169.1|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil)
hg19_v2_chr3_-_139199565_139199582	0.265471	AIRE	ENST00000511956.1|RBP2|ENSG00000114113.2|retinol binding protein 2, cellular
hg19_v2_chr3_-_33686925_33687000	0.264122	AIRE	ENST00000485378.2|CLASP2|ENSG00000163539.11|cytoplasmic linker associated protein 2 	ENST00000313350.6|CLASP2|ENSG00000163539.11|cytoplasmic linker associated protein 2 	ENST00000487200.1|CLASP2|ENSG00000163539.11|cytoplasmic linker associated protein 2
hg19_v2_chr6_+_42584847_42584878	0.2602	AIRE	ENST00000372883.3|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2
hg19_v2_chr15_-_22448819_22448885	0.260076	AIRE	ENST00000604066.1|IGHV1OR15-1|ENSG00000270505.1|immunoglobulin heavy variable 1/OR15-1 (non-functional)
hg19_v2_chr19_-_47249679_47249737	0.256915	AIRE	ENST00000263280.6|STRN4|ENSG00000090372.10|striatin, calmodulin binding protein 4
hg19_v2_chr19_-_48753028_48753043	0.248999	AIRE	ENST00000522431.1|CARD8|ENSG00000105483.12|caspase recruitment domain family, member 8
hg19_v2_chr2_+_201981527_201981560	0.247143	AIRE	ENST00000441224.1|CFLAR|ENSG00000003402.15|CASP8 and FADD-like apoptosis regulator
hg19_v2_chr12_-_6579833_6579850	0.246554	AIRE	ENST00000396308.3|VAMP1|ENSG00000139190.12|vesicle-associated membrane protein 1 (synaptobrevin 1)
hg19_v2_chr16_-_31147020_31147083	0.244727	AIRE	ENST00000568261.1|PRSS8|ENSG00000052344.11|protease, serine, 8 	ENST00000567797.1|PRSS8|ENSG00000052344.11|protease, serine, 8 	ENST00000317508.6|PRSS8|ENSG00000052344.11|protease, serine, 8
hg19_v2_chr16_+_56672571_56672587	0.239225	AIRE	ENST00000290705.8|MT1A|ENSG00000205362.6|metallothionein 1A
hg19_v2_chr9_-_21482312_21482312	0.235903	AIRE	ENST00000448696.3|IFNE|ENSG00000184995.6|interferon, epsilon
hg19_v2_chr6_+_26538566_26538647	0.234569	AIRE	ENST00000377575.2|HMGN4|ENSG00000182952.4|high mobility group nucleosomal binding domain 4
hg19_v2_chr1_+_36038971_36038971	0.231411	AIRE	ENST00000373235.3|TFAP2E|ENSG00000116819.6|transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon)
hg19_v2_chr22_+_36649170_36649207	0.23063	AIRE	ENST00000438034.1|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000427990.1|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000347595.7|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000397279.4|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000433768.1|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000440669.2|APOL1|ENSG00000100342.16|apolipoprotein L, 1
hg19_v2_chr15_+_85523671_85523747	0.227898	AIRE	ENST00000310298.4|PDE8A|ENSG00000073417.10|phosphodiesterase 8A 	ENST00000557957.1|PDE8A|ENSG00000073417.10|phosphodiesterase 8A
hg19_v2_chr6_+_160327974_160327974	0.227433	AIRE	ENST00000252660.4|MAS1|ENSG00000130368.4|MAS1 oncogene
hg19_v2_chr11_-_85376121_85376181	0.225063	AIRE	ENST00000527447.1|CREBZF|ENSG00000137504.9|CREB/ATF bZIP transcription factor
hg19_v2_chr2_+_204732487_204732521	0.223428	AIRE	ENST00000302823.3|CTLA4|ENSG00000163599.10|cytotoxic T-lymphocyte-associated protein 4
hg19_v2_chr1_-_52456352_52456436	0.220948	AIRE	ENST00000371655.3|RAB3B|ENSG00000169213.6|RAB3B, member RAS oncogene family
hg19_v2_chr1_-_243326612_243326642	0.220383	AIRE	ENST00000492145.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa 	ENST00000490813.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa 	ENST00000464936.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr11_-_18956556_18956556	0.217569	AIRE	ENST00000302797.3|MRGPRX1|ENSG00000170255.6|MAS-related GPR, member X1
hg19_v2_chr4_-_120243545_120243562	0.210771	AIRE	ENST00000274024.3|FABP2|ENSG00000145384.3|fatty acid binding protein 2, intestinal
hg19_v2_chr6_-_32806506_32806599	0.202217	AIRE	ENST00000374897.2|TAP2|ENSG00000204267.9|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) 	ENST00000452392.2|TAP2|ENSG00000250264.1|Uncharacterized protein
hg19_v2_chr19_-_36304201_36304201	0.200482	AIRE	ENST00000301175.3|PRODH2|ENSG00000250799.5|proline dehydrogenase (oxidase) 2
hg19_v2_chr14_-_65409438_65409479	0.198186	AIRE	ENST00000557049.1|GPX2|ENSG00000176153.10|glutathione peroxidase 2 (gastrointestinal)
hg19_v2_chr22_-_32767017_32767063	0.194571	AIRE	ENST00000400234.1|RFPL3S|ENSG00000205853.6|RFPL3 antisense
hg19_v2_chr19_-_23869999_23870022	0.182983	AIRE	ENST00000601935.1|ZNF675|ENSG00000197372.5|zinc finger protein 675 	ENST00000359788.4|ZNF675|ENSG00000197372.5|zinc finger protein 675 	ENST00000600313.1|ZNF675|ENSG00000197372.5|zinc finger protein 675 	ENST00000596211.1|ZNF675|ENSG00000197372.5|zinc finger protein 675 	ENST00000599168.1|ZNF675|ENSG00000197372.5|zinc finger protein 675
hg19_v2_chr5_+_32788945_32788945	0.179262	AIRE	ENST00000326958.1|AC026703.1|ENSG00000181495.1|AC026703.1
hg19_v2_chr8_-_7220490_7220490	0.178173	AIRE	ENST00000400078.2|ZNF705G|ENSG00000215372.5|zinc finger protein 705G
hg19_v2_chr4_+_71587669_71587752	0.177655	AIRE	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr12_+_7282795_7283047	0.176093	AIRE	ENST00000266546.6|CLSTN3|ENSG00000139182.9|calsyntenin 3
hg19_v2_chrX_-_139866723_139866723	0.171307	AIRE	ENST00000370532.2|CDR1|ENSG00000184258.5|cerebellar degeneration-related protein 1, 34kDa
hg19_v2_chr17_-_295730_295730	0.170463	AIRE	ENST00000329099.4|FAM101B|ENSG00000183688.4|family with sequence similarity 101, member B
hg19_v2_chr3_-_36781352_36781352	0.169494	AIRE	ENST00000416516.2|DCLK3|ENSG00000163673.6|doublecortin-like kinase 3
hg19_v2_chr19_-_16606988_16607003	0.166582	AIRE	ENST00000269881.3|CALR3|ENSG00000269058.1|calreticulin 3
hg19_v2_chr2_+_234686976_234686976	0.16259	AIRE	ENST00000389758.3|MROH2A|ENSG00000185038.10|maestro heat-like repeat family member 2A
hg19_v2_chr6_+_167525277_167525295	0.159595	AIRE	ENST00000400926.2|CCR6|ENSG00000112486.10|chemokine (C-C motif) receptor 6
hg19_v2_chr2_+_219840955_219841012	0.158331	AIRE	ENST00000598002.1|LINC00608|ENSG00000236445.2|long intergenic non-protein coding RNA 608 	ENST00000432733.1|LINC00608|ENSG00000236445.2|long intergenic non-protein coding RNA 608
hg19_v2_chr14_-_46185155_46185184	0.157498	AIRE	ENST00000555442.1|RP11-369C8.1|ENSG00000258616.1|RP11-369C8.1
hg19_v2_chr5_-_36242119_36242381	0.155392	AIRE	ENST00000511088.1|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial 	ENST00000282512.3|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial 	ENST00000506945.1|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial
hg19_v2_chr6_-_33864684_33864698	0.153412	AIRE	ENST00000506222.2|LINC01016|ENSG00000249346.2|long intergenic non-protein coding RNA 1016 	ENST00000533304.1|LINC01016|ENSG00000249346.2|long intergenic non-protein coding RNA 1016
hg19_v2_chr22_+_40322623_40322646	0.148471	AIRE	ENST00000399090.2|GRAP2|ENSG00000100351.12|GRB2-related adaptor protein 2
hg19_v2_chr1_+_241815577_241815588	0.143955	AIRE	ENST00000366552.2|WDR64|ENSG00000162843.13|WD repeat domain 64 	ENST00000437684.2|WDR64|ENSG00000162843.13|WD repeat domain 64
hg19_v2_chr22_+_40322595_40322618	0.14386	AIRE	ENST00000420971.1|GRAP2|ENSG00000100351.12|GRB2-related adaptor protein 2 	ENST00000544756.1|GRAP2|ENSG00000100351.12|GRB2-related adaptor protein 2
hg19_v2_chr6_+_36839616_36839646	0.143551	AIRE	ENST00000359359.2|C6orf89|ENSG00000198663.12|chromosome 6 open reading frame 89 	ENST00000510325.2|C6orf89|ENSG00000198663.12|chromosome 6 open reading frame 89
hg19_v2_chr1_+_100810575_100810584	0.139775	AIRE	ENST00000542213.1|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr4_-_17513851_17513862	0.130755	AIRE	ENST00000281243.5|QDPR|ENSG00000151552.7|quinoid dihydropteridine reductase
hg19_v2_chr19_-_36643329_36643407	0.127297	AIRE	ENST00000589154.1|COX7A1|ENSG00000161281.6|cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)
hg19_v2_chr16_-_28503327_28503356	0.126624	AIRE	ENST00000535392.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000395653.4|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3
hg19_v2_chr20_-_33735070_33735175	0.125676	AIRE	ENST00000374491.3|EDEM2|ENSG00000088298.8|ER degradation enhancer, mannosidase alpha-like 2 	ENST00000542871.1|EDEM2|ENSG00000088298.8|ER degradation enhancer, mannosidase alpha-like 2 	ENST00000374492.3|EDEM2|ENSG00000088298.8|ER degradation enhancer, mannosidase alpha-like 2
hg19_v2_chr10_-_46030787_46030824	0.124432	AIRE	ENST00000395769.2|MARCH8|ENSG00000165406.11|membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase
hg19_v2_chr1_+_152627927_152627953	0.121489	AIRE	ENST00000444515.1|LINC00302|ENSG00000176075.6|long intergenic non-protein coding RNA 302 	ENST00000536536.1|LINC00302|ENSG00000176075.6|long intergenic non-protein coding RNA 302
hg19_v2_chr2_-_166060571_166060582	0.120895	AIRE	ENST00000360093.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr22_+_25202232_25202286	0.12066	AIRE	ENST00000400358.4|SGSM1|ENSG00000167037.14|small G protein signaling modulator 1 	ENST00000400359.4|SGSM1|ENSG00000167037.14|small G protein signaling modulator 1
hg19_v2_chr11_+_6947647_6947698	0.116397	AIRE	ENST00000278319.5|ZNF215|ENSG00000149054.10|zinc finger protein 215
hg19_v2_chr9_-_4666421_4666492	0.114568	AIRE	ENST00000381895.5|SPATA6L|ENSG00000106686.12|spermatogenesis associated 6-like
hg19_v2_chr2_+_207804278_207804301	0.111925	AIRE	ENST00000272852.3|CPO|ENSG00000144410.4|carboxypeptidase O
hg19_v2_chr20_+_54823788_54823788	0.107521	AIRE	ENST00000243911.2|MC3R|ENSG00000124089.4|melanocortin 3 receptor
hg19_v2_chr1_-_152297679_152297722	0.10634	AIRE	ENST00000368799.1|FLG|ENSG00000143631.10|filaggrin
hg19_v2_chr12_-_50677255_50677329	0.10466	AIRE	ENST00000551691.1|LIMA1|ENSG00000050405.9|LIM domain and actin binding 1 	ENST00000394943.3|LIMA1|ENSG00000050405.9|LIM domain and actin binding 1 	ENST00000341247.4|LIMA1|ENSG00000050405.9|LIM domain and actin binding 1
hg19_v2_chr2_-_166060552_166060566	0.0988143	AIRE	ENST00000283254.7|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit 	ENST00000453007.1|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr20_-_43093968_43093984	0.0983104	AIRE	ENST00000306731.4|C20orf62|ENSG00000168746.6|chromosome 20 open reading frame 62 	ENST00000372910.3|C20orf62|ENSG00000168746.6|chromosome 20 open reading frame 62
hg19_v2_chr18_-_37380230_37380283	0.0950891	AIRE	ENST00000591629.1|LINC00669|ENSG00000267374.1|long intergenic non-protein coding RNA 669
hg19_v2_chr18_+_39766626_39766668	0.0948612	AIRE	ENST00000593234.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000585627.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000591199.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000586990.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000593051.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000593316.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000591381.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000585639.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000589068.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907
hg19_v2_chr12_+_52643077_52643093	0.0937121	AIRE	ENST00000553310.2|KRT86|ENSG00000170442.7|keratin 86 	ENST00000544024.1|KRT86|ENSG00000170442.7|keratin 86
hg19_v2_chr16_+_72088376_72088537	0.0910548	AIRE	ENST00000570083.1|HP|ENSG00000257017.4|haptoglobin 	ENST00000355906.5|HP|ENSG00000257017.4|haptoglobin 	ENST00000398131.2|HP|ENSG00000257017.4|haptoglobin 	ENST00000569639.1|HP|ENSG00000257017.4|haptoglobin 	ENST00000356967.5|HPR|ENSG00000261701.2|haptoglobin-related protein 	ENST00000564499.1|HP|ENSG00000257017.4|haptoglobin 	ENST00000357763.4|HP|ENSG00000257017.4|haptoglobin 	ENST00000562526.1|HP|ENSG00000257017.4|haptoglobin 	ENST00000565574.1|HP|ENSG00000257017.4|haptoglobin 	ENST00000568417.2|HP|ENSG00000257017.4|haptoglobin
hg19_v2_chr7_+_20686946_20686966	0.0860739	AIRE	ENST00000443026.2|ABCB5|ENSG00000004846.12|ATP-binding cassette, sub-family B (MDR/TAP), member 5 	ENST00000406935.1|ABCB5|ENSG00000004846.12|ATP-binding cassette, sub-family B (MDR/TAP), member 5
hg19_v2_chr4_+_71588372_71588404	0.085638	AIRE	ENST00000536664.1|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr13_-_46756351_46756459	0.0785574	AIRE	ENST00000323076.2|LCP1|ENSG00000136167.9|lymphocyte cytosolic protein 1 (L-plastin)
hg19_v2_chr15_-_38519066_38519111	0.0769298	AIRE	ENST00000561320.1|RP11-346D14.1|ENSG00000259380.1|RP11-346D14.1	ENST00000561161.1|RP11-346D14.1|ENSG00000259380.1|RP11-346D14.1
hg19_v2_chr12_-_75603482_75603534	0.0763129	AIRE	ENST00000341669.3|KCNC2|ENSG00000166006.8|potassium voltage-gated channel, Shaw-related subfamily, member 2 	ENST00000298972.1|KCNC2|ENSG00000166006.8|potassium voltage-gated channel, Shaw-related subfamily, member 2 	ENST00000350228.2|KCNC2|ENSG00000166006.8|potassium voltage-gated channel, Shaw-related subfamily, member 2
hg19_v2_chr7_-_55606346_55606366	0.0753059	AIRE	ENST00000545390.1|VOPP1|ENSG00000154978.8|vesicular, overexpressed in cancer, prosurvival protein 1
hg19_v2_chr6_+_118869452_118869475	0.0705676	AIRE	ENST00000357525.5|PLN|ENSG00000198523.5|phospholamban
hg19_v2_chr17_+_36452989_36453152	0.0677752	AIRE	ENST00000312513.5|MRPL45|ENSG00000174100.5|mitochondrial ribosomal protein L45 	ENST00000582535.1|MRPL45|ENSG00000174100.5|mitochondrial ribosomal protein L45
hg19_v2_chr1_-_52344471_52344481	0.0668679	AIRE	ENST00000352171.7|NRD1|ENSG00000078618.15|nardilysin (N-arginine dibasic convertase) 	ENST00000354831.7|NRD1|ENSG00000078618.15|nardilysin (N-arginine dibasic convertase)
hg19_v2_chr12_-_64784471_64784503	0.0663938	AIRE	ENST00000333722.5|C12orf56|ENSG00000185306.8|chromosome 12 open reading frame 56
hg19_v2_chr5_+_122181279_122181321	0.0653523	AIRE	ENST00000395451.4|SNX24|ENSG00000064652.6|sorting nexin 24 	ENST00000506996.1|SNX24|ENSG00000064652.6|sorting nexin 24
hg19_v2_chr4_-_88450612_88450656	0.0601712	AIRE	ENST00000418378.1|SPARCL1|ENSG00000152583.8|SPARC-like 1 (hevin) 	ENST00000282470.6|SPARCL1|ENSG00000152583.8|SPARC-like 1 (hevin)
hg19_v2_chr15_-_83209210_83209315	0.0570475	AIRE	ENST00000561157.1|RPS17L|ENSG00000182774.6|ribosomal protein S17-like 	ENST00000330244.6|RPS17L|ENSG00000182774.6|ribosomal protein S17-like
hg19_v2_chr3_-_121264848_121264859	0.05104	AIRE	ENST00000264233.5|POLQ|ENSG00000051341.9|polymerase (DNA directed), theta
hg19_v2_chr6_-_169582835_169582941	0.0490936	AIRE	ENST00000564830.1|RP11-417E7.2|ENSG00000261039.1|RP11-417E7.2
hg19_v2_chr14_+_45605127_45605155	0.0488965	AIRE	ENST00000556036.1|FANCM|ENSG00000187790.6|Fanconi anemia, complementation group M 	ENST00000267430.5|FANCM|ENSG00000187790.6|Fanconi anemia, complementation group M
hg19_v2_chr12_-_6579808_6579819	0.0447774	AIRE	ENST00000535180.1|VAMP1|ENSG00000139190.12|vesicle-associated membrane protein 1 (synaptobrevin 1) 	ENST00000400911.3|VAMP1|ENSG00000139190.12|vesicle-associated membrane protein 1 (synaptobrevin 1)
hg19_v2_chr11_+_64794875_64794983	0.0445612	AIRE	ENST00000377244.3|SNX15|ENSG00000110025.8|sorting nexin 15 	ENST00000534637.1|SNX15|ENSG00000110025.8|sorting nexin 15 	ENST00000524831.1|SNX15|ENSG00000110025.8|sorting nexin 15
hg19_v2_chr9_+_117904097_117904097	0.0427271	AIRE	ENST00000374016.1|DEC1|ENSG00000173077.10|deleted in esophageal cancer 1
hg19_v2_chr5_-_107703556_107703655	0.0421441	AIRE	ENST00000496714.1|FBXL17|ENSG00000145743.11|F-box and leucine-rich repeat protein 17
hg19_v2_chr1_+_207669573_207669606	0.0417217	AIRE	ENST00000400960.2|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000534202.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chrX_+_70503433_70503517	0.0415195	AIRE	ENST00000276079.8|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding 	ENST00000373856.3|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding 	ENST00000373841.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding 	ENST00000420903.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding
hg19_v2_chr9_-_104198042_104198105	0.0393492	AIRE	ENST00000374855.4|ALDOB|ENSG00000136872.13|aldolase B, fructose-bisphosphate
hg19_v2_chr3_-_133648656_133648656	0.0392206	AIRE	ENST00000408895.2|C3orf36|ENSG00000221972.2|chromosome 3 open reading frame 36
hg19_v2_chr2_+_166150541_166150594	0.0390092	AIRE	ENST00000283256.6|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit
hg19_v2_chr8_+_104384616_104384661	0.0364101	AIRE	ENST00000520337.1|CTHRC1|ENSG00000164932.8|collagen triple helix repeat containing 1
hg19_v2_chr11_+_30252549_30252565	0.0358826	AIRE	ENST00000254122.3|FSHB|ENSG00000131808.6|follicle stimulating hormone, beta polypeptide 	ENST00000417547.1|FSHB|ENSG00000131808.6|follicle stimulating hormone, beta polypeptide
hg19_v2_chr11_-_5345582_5345582	0.035628	AIRE	ENST00000328813.2|OR51B2|ENSG00000184881.2|olfactory receptor, family 51, subfamily B, member 2
hg19_v2_chr2_-_89568263_89568263	0.0343048	AIRE	ENST00000473726.1|IGKV1-33|ENSG00000242076.1|immunoglobulin kappa variable 1-33
hg19_v2_chr1_-_35497506_35497574	0.029902	AIRE	ENST00000317538.5|ZMYM6|ENSG00000163867.12|zinc finger, MYM-type 6 	ENST00000373340.2|ZMYM6|ENSG00000163867.12|zinc finger, MYM-type 6 	ENST00000357182.4|ZMYM6|ENSG00000163867.12|zinc finger, MYM-type 6
hg19_v2_chr5_+_122181184_122181213	0.0280672	AIRE	ENST00000513881.1|SNX24|ENSG00000064652.6|sorting nexin 24
hg19_v2_chr2_+_1417228_1417252	0.0272882	AIRE	ENST00000382269.3|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000337415.3|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000345913.4|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000346956.3|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000349624.3|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000539820.1|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000329066.4|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000382201.3|TPO|ENSG00000115705.16|thyroid peroxidase
hg19_v2_chr3_+_88199099_88199154	0.0268629	AIRE	ENST00000486971.1|C3orf38|ENSG00000179021.5|chromosome 3 open reading frame 38
hg19_v2_chr14_+_21236586_21236600	0.0261796	AIRE	ENST00000326783.3|EDDM3B|ENSG00000181552.3|epididymal protein 3B
hg19_v2_chr1_+_206223941_206223976	0.0256696	AIRE	ENST00000367126.4|AVPR1B|ENSG00000198049.5|arginine vasopressin receptor 1B
hg19_v2_chr9_+_100615536_100615558	0.0253156	AIRE	ENST00000375123.3|FOXE1|ENSG00000178919.7|forkhead box E1 (thyroid transcription factor 2)
hg19_v2_chr8_-_141774467_141774622	0.0248973	AIRE	ENST00000520151.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000519024.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000519465.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr9_-_114361665_114361719	0.0242139	AIRE	ENST00000309195.5|PTGR1|ENSG00000106853.12|prostaglandin reductase 1
hg19_v2_chr3_+_140981456_140981508	0.0235948	AIRE	ENST00000504264.1|ACPL2|ENSG00000155893.7|acid phosphatase-like 2
hg19_v2_chr10_-_46030841_46030846	0.0194545	AIRE	ENST00000453424.2|MARCH8|ENSG00000165406.11|membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase
hg19_v2_chr3_+_46412345_46412424	0.0187889	AIRE	ENST00000292303.4|CCR5|ENSG00000160791.12|chemokine (C-C motif) receptor 5 (gene/pseudogene)
hg19_v2_chrX_-_102941596_102941746	0.0159313	AIRE	ENST00000441076.2|MORF4L2|ENSG00000123562.12|mortality factor 4 like 2 	ENST00000422355.1|MORF4L2|ENSG00000123562.12|mortality factor 4 like 2 	ENST00000442614.1|MORF4L2|ENSG00000123562.12|mortality factor 4 like 2 	ENST00000422154.2|MORF4L2|ENSG00000123562.12|mortality factor 4 like 2 	ENST00000451301.1|MORF4L2|ENSG00000123562.12|mortality factor 4 like 2
hg19_v2_chr19_-_10491234_10491352	0.0115694	AIRE	ENST00000524462.1|TYK2|ENSG00000105397.9|tyrosine kinase 2 	ENST00000531836.1|TYK2|ENSG00000105397.9|tyrosine kinase 2 	ENST00000525621.1|TYK2|ENSG00000105397.9|tyrosine kinase 2
hg19_v2_chr4_-_47465666_47465736	0.00225577	AIRE	ENST00000381571.4|COMMD8|ENSG00000169019.9|COMM domain containing 8
hg19_v2_chr17_+_41857793_41857814	0.00193586	AIRE	ENST00000449302.3|C17orf105|ENSG00000231256.3|chromosome 17 open reading frame 105
hg19_v2_chr12_-_76462713_76462773	0.00137153	AIRE	ENST00000552056.1|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr1_+_207669613_207669686	0.000653571	AIRE	ENST00000367049.4|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000529814.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
