hg19_v2_chr22_+_33197683_33197698	0.557914	AGCUUAU	ENST00000266085.6|TIMP3|ENSG00000100234.11|TIMP metallopeptidase inhibitor 3
hg19_v2_chr1_+_178694300_178694346	0.408058	AGCUUAU	ENST00000367635.3|RALGPS2|ENSG00000116191.13|Ral GEF with PH domain and SH3 binding motif 2
hg19_v2_chr11_-_115375107_115375283	0.34634	AGCUUAU	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chr8_-_10697281_10697365	0.293683	AGCUUAU	ENST00000524114.1|PINX1|ENSG00000254093.4|PIN2/TERF1 interacting, telomerase inhibitor 1 	ENST00000553390.1|SOX7|ENSG00000171056.6|SRY (sex determining region Y)-box 7 	ENST00000554914.1|SOX7|ENSG00000258724.1|Transcription factor SOX-7; Uncharacterized protein; cDNA FLJ58508, highly similar to Transcription factor SOX-7
hg19_v2_chr11_+_12308447_12308447	0.273306	AGCUUAU	ENST00000256186.2|MICALCL|ENSG00000133808.4|MICAL C-terminal like
hg19_v2_chr2_+_228678550_228678570	0.239287	AGCUUAU	ENST00000409189.3|CCL20|ENSG00000115009.7|chemokine (C-C motif) ligand 20 	ENST00000358813.4|CCL20|ENSG00000115009.7|chemokine (C-C motif) ligand 20
hg19_v2_chr8_-_82024290_82024310	0.227013	AGCUUAU	ENST00000220597.4|PAG1|ENSG00000076641.4|phosphoprotein associated with glycosphingolipid microdomains 1
hg19_v2_chr21_-_32931290_32931341	0.225088	AGCUUAU	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr11_-_64646086_64646191	0.222253	AGCUUAU	ENST00000320631.3|EHD1|ENSG00000110047.13|EH-domain containing 1
hg19_v2_chr8_-_10588010_10588030	0.195517	AGCUUAU	ENST00000304501.1|SOX7|ENSG00000171056.6|SRY (sex determining region Y)-box 7
hg19_v2_chr17_-_33448468_33448513	0.183224	AGCUUAU	ENST00000591723.1|RAD51L3-RFFL|ENSG00000267618.1|Uncharacterized protein  	ENST00000587405.1|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000593039.1|RAD51L3-RFFL|ENSG00000267618.1|Uncharacterized protein
hg19_v2_chrX_+_100805496_100805514	0.177949	AGCUUAU	ENST00000372829.3|ARMCX1|ENSG00000126947.7|armadillo repeat containing, X-linked 1
hg19_v2_chr17_+_17942594_17942606	0.17715	AGCUUAU	ENST00000268719.4|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr1_+_2160134_2160134	0.176005	AGCUUAU	ENST00000378536.4|SKI|ENSG00000157933.9|v-ski avian sarcoma viral oncogene homolog
hg19_v2_chr5_+_135364584_135364691	0.166321	AGCUUAU	ENST00000442011.2|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa 	ENST00000305126.8|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa
hg19_v2_chr2_-_64371546_64371588	0.164124	AGCUUAU	ENST00000358912.4|PELI1|ENSG00000197329.7|pellino E3 ubiquitin protein ligase 1
hg19_v2_chr20_-_23030296_23030378	0.155897	AGCUUAU	ENST00000377103.2|THBD|ENSG00000178726.6|thrombomodulin
hg19_v2_chr10_+_98741041_98741041	0.140806	AGCUUAU	ENST00000286067.2|C10orf12|ENSG00000155640.5|chromosome 10 open reading frame 12
hg19_v2_chr4_-_89744457_89744512	0.126662	AGCUUAU	ENST00000395002.2|FAM13A|ENSG00000138640.10|family with sequence similarity 13, member A
hg19_v2_chr10_+_112631547_112631596	0.122955	AGCUUAU	ENST00000280154.7|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor) 	ENST00000393104.2|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor)
hg19_v2_chrX_-_18372792_18372847	0.115152	AGCUUAU	ENST00000251900.4|SCML2|ENSG00000102098.13|sex comb on midleg-like 2 (Drosophila)
hg19_v2_chr20_-_10654639_10654694	0.112268	AGCUUAU	ENST00000254958.5|JAG1|ENSG00000101384.7|jagged 1
hg19_v2_chr7_-_113559104_113559120	0.110087	AGCUUAU	ENST00000284601.3|PPP1R3A|ENSG00000154415.3|protein phosphatase 1, regulatory subunit 3A
hg19_v2_chr17_-_32690239_32690259	0.107675	AGCUUAU	ENST00000225842.3|CCL1|ENSG00000108702.3|chemokine (C-C motif) ligand 1
hg19_v2_chr8_-_9008206_9008222	0.106474	AGCUUAU	ENST00000310455.3|PPP1R3B|ENSG00000173281.4|protein phosphatase 1, regulatory subunit 3B
hg19_v2_chr5_+_86564739_86564791	0.102681	AGCUUAU	ENST00000456692.2|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000512763.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000506290.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr17_-_30669138_30669208	0.0961871	AGCUUAU	ENST00000225805.4|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000577809.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chr3_+_159706537_159706741	0.0959437	AGCUUAU	ENST00000305579.2|IL12A|ENSG00000168811.2|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35) 	ENST00000480787.1|IL12A|ENSG00000168811.2|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35) 	ENST00000466512.1|IL12A|ENSG00000168811.2|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)
hg19_v2_chr1_+_169764163_169764240	0.0948766	AGCUUAU	ENST00000413811.2|C1orf112|ENSG00000000460.12|chromosome 1 open reading frame 112 	ENST00000359326.4|C1orf112|ENSG00000000460.12|chromosome 1 open reading frame 112 	ENST00000456684.1|C1orf112|ENSG00000000460.12|chromosome 1 open reading frame 112
hg19_v2_chr4_+_144257915_144258009	0.0907358	AGCUUAU	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr7_-_83824169_83824217	0.0901844	AGCUUAU	ENST00000265362.4|SEMA3A|ENSG00000075213.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
hg19_v2_chr17_-_33416231_33416338	0.0891503	AGCUUAU	ENST00000584655.1|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000447669.2|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000315249.7|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase
hg19_v2_chr4_+_124320665_124320702	0.0885365	AGCUUAU	ENST00000394339.2|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila)
hg19_v2_chr9_-_99180597_99180614	0.0825359	AGCUUAU	ENST00000375256.4|ZNF367|ENSG00000165244.6|zinc finger protein 367
hg19_v2_chr3_+_141205852_141205929	0.0822779	AGCUUAU	ENST00000286364.3|RASA2|ENSG00000155903.7|RAS p21 protein activator 2 	ENST00000452898.1|RASA2|ENSG00000155903.7|RAS p21 protein activator 2
hg19_v2_chr11_+_120207787_120207962	0.0804082	AGCUUAU	ENST00000397843.2|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12 	ENST00000356641.3|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr10_-_3827417_3827473	0.0788505	AGCUUAU	ENST00000497571.1|KLF6|ENSG00000067082.10|Kruppel-like factor 6 	ENST00000542957.1|KLF6|ENSG00000067082.10|Kruppel-like factor 6
hg19_v2_chrX_+_46696372_46696406	0.0773589	AGCUUAU	ENST00000218340.3|RP2|ENSG00000102218.5|retinitis pigmentosa 2 (X-linked recessive)
hg19_v2_chr11_+_33278811_33279133	0.0768586	AGCUUAU	ENST00000303296.4|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3 	ENST00000379016.3|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3
hg19_v2_chr7_-_44924939_44924993	0.0767359	AGCUUAU	ENST00000395699.2|PURB|ENSG00000146676.5|purine-rich element binding protein B
hg19_v2_chr8_-_141645645_141645783	0.0732246	AGCUUAU	ENST00000519980.1|AGO2|ENSG00000123908.7|argonaute RISC catalytic component 2 	ENST00000220592.5|AGO2|ENSG00000123908.7|argonaute RISC catalytic component 2
hg19_v2_chr15_-_38856836_38857029	0.0684592	AGCUUAU	ENST00000450598.2|RASGRP1|ENSG00000172575.7|RAS guanyl releasing protein 1 (calcium and DAG-regulated) 	ENST00000559830.1|RASGRP1|ENSG00000172575.7|RAS guanyl releasing protein 1 (calcium and DAG-regulated) 	ENST00000558164.1|RASGRP1|ENSG00000172575.7|RAS guanyl releasing protein 1 (calcium and DAG-regulated) 	ENST00000310803.5|RASGRP1|ENSG00000172575.7|RAS guanyl releasing protein 1 (calcium and DAG-regulated)
hg19_v2_chr15_+_59063478_59063561	0.0660506	AGCUUAU	ENST00000559228.1|FAM63B|ENSG00000128923.6|family with sequence similarity 63, member B 	ENST00000450403.2|FAM63B|ENSG00000128923.6|family with sequence similarity 63, member B
hg19_v2_chr4_-_87281224_87281375	0.0635052	AGCUUAU	ENST00000395169.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395161.2|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chrX_+_123095155_123095179	0.0631362	AGCUUAU	ENST00000371160.1|STAG2|ENSG00000101972.14|stromal antigen 2 	ENST00000435103.1|STAG2|ENSG00000101972.14|stromal antigen 2
hg19_v2_chr5_+_60628074_60628100	0.0613744	AGCUUAU	ENST00000252744.5|ZSWIM6|ENSG00000130449.5|zinc finger, SWIM-type containing 6
hg19_v2_chr10_-_94003003_94003013	0.0609739	AGCUUAU	ENST00000412050.4|CPEB3|ENSG00000107864.10|cytoplasmic polyadenylation element binding protein 3
hg19_v2_chr9_+_21802542_21802624	0.0607911	AGCUUAU	ENST00000380172.4|MTAP|ENSG00000099810.14|methylthioadenosine phosphorylase
hg19_v2_chr10_+_76871454_76871467	0.0599074	AGCUUAU	ENST00000372687.4|SAMD8|ENSG00000156671.8|sterile alpha motif domain containing 8
hg19_v2_chr12_-_121342170_121342183	0.0579486	AGCUUAU	ENST00000353487.2|SPPL3|ENSG00000157837.11|signal peptide peptidase like 3
hg19_v2_chr3_-_24536253_24536328	0.0567122	AGCUUAU	ENST00000428492.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000396671.2|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000431815.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000418247.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000416420.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000356447.4|THRB|ENSG00000151090.13|thyroid hormone receptor, beta
hg19_v2_chr2_+_70142189_70142223	0.0557132	AGCUUAU	ENST00000264444.2|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr13_+_28813645_28813770	0.055443	AGCUUAU	ENST00000282391.5|PAN3|ENSG00000152520.9|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
hg19_v2_chr22_+_39101728_39101763	0.0551935	AGCUUAU	ENST00000216044.5|GTPBP1|ENSG00000100226.11|GTP binding protein 1 	ENST00000484657.1|GTPBP1|ENSG00000100226.11|GTP binding protein 1
hg19_v2_chr2_-_218808771_218808851	0.0547747	AGCUUAU	ENST00000449814.1|TNS1|ENSG00000079308.12|tensin 1 	ENST00000171887.4|TNS1|ENSG00000079308.12|tensin 1
hg19_v2_chr3_+_152017181_152017229	0.0545294	AGCUUAU	ENST00000498502.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324196.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000545754.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000357472.3|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chr3_-_113465065_113465147	0.0535885	AGCUUAU	ENST00000497255.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000478020.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000240922.3|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000493900.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit
hg19_v2_chr15_-_75871589_75871676	0.0531744	AGCUUAU	ENST00000306726.2|PTPN9|ENSG00000169410.5|protein tyrosine phosphatase, non-receptor type 9
hg19_v2_chr17_+_38278530_38278605	0.0526287	AGCUUAU	ENST00000398532.4|MSL1|ENSG00000188895.7|male-specific lethal 1 homolog (Drosophila)
hg19_v2_chr15_-_42840961_42841005	0.052016	AGCUUAU	ENST00000563454.1|LRRC57|ENSG00000180979.5|leucine rich repeat containing 57 	ENST00000397130.3|LRRC57|ENSG00000180979.5|leucine rich repeat containing 57 	ENST00000570160.1|LRRC57|ENSG00000180979.5|leucine rich repeat containing 57 	ENST00000323443.2|LRRC57|ENSG00000180979.5|leucine rich repeat containing 57
hg19_v2_chr2_-_180129484_180129574	0.0496285	AGCUUAU	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr8_+_87354945_87355012	0.0464303	AGCUUAU	ENST00000517970.1|WWP1|ENSG00000123124.9|WW domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr22_-_22221900_22221970	0.0441979	AGCUUAU	ENST00000215832.6|MAPK1|ENSG00000100030.10|mitogen-activated protein kinase 1 	ENST00000398822.3|MAPK1|ENSG00000100030.10|mitogen-activated protein kinase 1
hg19_v2_chr2_-_37193606_37193633	0.0441805	AGCUUAU	ENST00000379213.2|STRN|ENSG00000115808.7|striatin, calmodulin binding protein 	ENST00000263918.4|STRN|ENSG00000115808.7|striatin, calmodulin binding protein
hg19_v2_chr2_-_85581701_85581743	0.0438188	AGCUUAU	ENST00000295802.4|RETSAT|ENSG00000042445.9|retinol saturase (all-trans-retinol 13,14-reductase)
hg19_v2_chr1_+_154377669_154377699	0.0429609	AGCUUAU	ENST00000368485.3|IL6R|ENSG00000160712.8|interleukin 6 receptor 	ENST00000344086.4|IL6R|ENSG00000160712.8|interleukin 6 receptor
hg19_v2_chr1_-_153895377_153895465	0.0425377	AGCUUAU	ENST00000368655.4|GATAD2B|ENSG00000143614.7|GATA zinc finger domain containing 2B
hg19_v2_chr20_+_62371206_62371224	0.0410969	AGCUUAU	ENST00000266077.2|SLC2A4RG|ENSG00000125520.9|SLC2A4 regulator
hg19_v2_chr3_+_98451275_98451361	0.0402005	AGCUUAU	ENST00000265261.6|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6 	ENST00000497008.1|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
hg19_v2_chr11_-_79151695_79151710	0.039401	AGCUUAU	ENST00000278550.7|TENM4|ENSG00000149256.10|teneurin transmembrane protein 4
hg19_v2_chr11_+_101981169_101981210	0.0381234	AGCUUAU	ENST00000526343.1|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000282441.5|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000537274.1|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000345877.2|YAP1|ENSG00000137693.9|Yes-associated protein 1
hg19_v2_chr20_+_56884752_56884799	0.0379769	AGCUUAU	ENST00000244040.3|RAB22A|ENSG00000124209.3|RAB22A, member RAS oncogene family
hg19_v2_chr18_-_72921303_72921339	0.037915	AGCUUAU	ENST00000322342.3|ZADH2|ENSG00000180011.6|zinc binding alcohol dehydrogenase domain containing 2
hg19_v2_chr16_+_69221028_69221092	0.0378484	AGCUUAU	ENST00000336278.4|SNTB2|ENSG00000168807.12|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)
hg19_v2_chr16_-_47007545_47007699	0.0374416	AGCUUAU	ENST00000317089.5|DNAJA2|ENSG00000069345.7|DnaJ (Hsp40) homolog, subfamily A, member 2
hg19_v2_chr2_-_201936302_201936416	0.0371115	AGCUUAU	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr1_+_28285973_28285973	0.0365667	AGCUUAU	ENST00000373884.5|XKR8|ENSG00000158156.7|XK, Kell blood group complex subunit-related family, member 8
hg19_v2_chr1_-_214724566_214724566	0.0357491	AGCUUAU	ENST00000366956.5|PTPN14|ENSG00000152104.7|protein tyrosine phosphatase, non-receptor type 14
hg19_v2_chr2_-_43453734_43453751	0.0356552	AGCUUAU	ENST00000282388.3|ZFP36L2|ENSG00000152518.5|ZFP36 ring finger protein-like 2
hg19_v2_chr22_+_38302285_38302361	0.0351246	AGCUUAU	ENST00000215957.6|MICALL1|ENSG00000100139.9|MICAL-like 1
hg19_v2_chr14_+_64854958_64855091	0.0344243	AGCUUAU	ENST00000555709.2|MTHFD1|ENSG00000100714.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase 	ENST00000554739.1|MTHFD1|ENSG00000100714.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase 	ENST00000554768.1|MTHFD1|ENSG00000100714.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase 	ENST00000216605.8|MTHFD1|ENSG00000100714.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase
hg19_v2_chr3_-_72496035_72496069	0.0343991	AGCUUAU	ENST00000477973.2|RYBP|ENSG00000163602.9|RING1 and YY1 binding protein
hg19_v2_chr13_-_110959478_110959511	0.0343619	AGCUUAU	ENST00000543140.1|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1 	ENST00000375820.4|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1
hg19_v2_chr8_-_22550815_22550844	0.0336897	AGCUUAU	ENST00000317216.2|EGR3|ENSG00000179388.8|early growth response 3
hg19_v2_chr3_-_48229846_48229918	0.0336772	AGCUUAU	ENST00000302506.3|CDC25A|ENSG00000164045.7|cell division cycle 25A 	ENST00000351231.3|CDC25A|ENSG00000164045.7|cell division cycle 25A 	ENST00000437972.1|CDC25A|ENSG00000164045.7|cell division cycle 25A
hg19_v2_chr8_-_75233563_75233681	0.0322259	AGCUUAU	ENST00000342232.4|JPH1|ENSG00000104369.4|junctophilin 1
hg19_v2_chr10_+_94050913_94050965	0.0320236	AGCUUAU	ENST00000358935.2|MARCH5|ENSG00000198060.5|membrane-associated ring finger (C3HC4) 5
hg19_v2_chr9_+_133971909_133971943	0.0313956	AGCUUAU	ENST00000247291.3|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372302.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372300.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372298.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like
hg19_v2_chr3_-_52713729_52713784	0.0307503	AGCUUAU	ENST00000296302.7|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000356770.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000337303.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409057.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000410007.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409114.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409767.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000423351.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr14_+_57046500_57046529	0.0297953	AGCUUAU	ENST00000261556.6|TMEM260|ENSG00000070269.9|transmembrane protein 260
hg19_v2_chr9_-_14314066_14314075	0.0294737	AGCUUAU	ENST00000397575.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr15_+_59279851_59279880	0.0294639	AGCUUAU	ENST00000348370.4|RNF111|ENSG00000157450.11|ring finger protein 111 	ENST00000434298.1|RNF111|ENSG00000157450.11|ring finger protein 111 	ENST00000559160.1|RNF111|ENSG00000157450.11|ring finger protein 111
hg19_v2_chr1_+_33005020_33005077	0.0289378	AGCUUAU	ENST00000373510.4|ZBTB8A|ENSG00000160062.10|zinc finger and BTB domain containing 8A 	ENST00000316459.4|ZBTB8A|ENSG00000160062.10|zinc finger and BTB domain containing 8A
hg19_v2_chr17_+_59477233_59477263	0.0288766	AGCUUAU	ENST00000240328.3|TBX2|ENSG00000121068.9|T-box 2
hg19_v2_chr8_+_98881268_98881382	0.0285552	AGCUUAU	ENST00000254898.5|MATN2|ENSG00000132561.9|matrilin 2 	ENST00000524308.1|MATN2|ENSG00000132561.9|matrilin 2 	ENST00000522025.2|MATN2|ENSG00000132561.9|matrilin 2
hg19_v2_chr1_+_36273743_36273773	0.0284438	AGCUUAU	ENST00000373210.3|AGO4|ENSG00000134698.10|argonaute RISC catalytic component 4
hg19_v2_chr15_-_102029873_102029917	0.0282419	AGCUUAU	ENST00000348070.1|PCSK6|ENSG00000140479.12|proprotein convertase subtilisin/kexin type 6 	ENST00000358417.3|PCSK6|ENSG00000140479.12|proprotein convertase subtilisin/kexin type 6 	ENST00000344273.2|PCSK6|ENSG00000140479.12|proprotein convertase subtilisin/kexin type 6
hg19_v2_chr12_+_5019061_5019078	0.0273312	AGCUUAU	ENST00000382545.3|KCNA1|ENSG00000111262.4|potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)
hg19_v2_chr7_+_102715315_102715380	0.0255681	AGCUUAU	ENST00000428183.2|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000323716.3|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000441711.2|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000454559.1|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000425331.1|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000541300.1|ARMC10|ENSG00000170632.9|armadillo repeat containing 10
hg19_v2_chr3_+_110790590_110790603	0.0241413	AGCUUAU	ENST00000485303.1|PVRL3|ENSG00000177707.6|poliovirus receptor-related 3
hg19_v2_chr12_-_40013553_40013635	0.0239427	AGCUUAU	ENST00000308666.3|ABCD2|ENSG00000173208.3|ATP-binding cassette, sub-family D (ALD), member 2
hg19_v2_chr6_-_82462425_82462491	0.0234855	AGCUUAU	ENST00000369754.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000320172.6|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000369756.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A
hg19_v2_chr4_-_100575781_100575805	0.0230681	AGCUUAU	ENST00000511828.1|RP11-766F14.2|ENSG00000248713.1|Protein LOC285556
hg19_v2_chr10_+_75757863_75757897	0.0219912	AGCUUAU	ENST00000372755.3|VCL|ENSG00000035403.12|vinculin 	ENST00000211998.4|VCL|ENSG00000035403.12|vinculin 	ENST00000417648.2|VCL|ENSG00000035403.12|vinculin
hg19_v2_chr9_-_34589700_34589709	0.0208983	AGCUUAU	ENST00000351266.4|CNTFR|ENSG00000122756.10|ciliary neurotrophic factor receptor
hg19_v2_chr7_+_18535346_18535399	0.020846	AGCUUAU	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr4_+_99916765_99916776	0.0208208	AGCUUAU	ENST00000296411.6|METAP1|ENSG00000164024.7|methionyl aminopeptidase 1
hg19_v2_chr15_-_50978965_50979012	0.0207702	AGCUUAU	ENST00000560955.1|TRPM7|ENSG00000092439.9|transient receptor potential cation channel, subfamily M, member 7 	ENST00000313478.7|TRPM7|ENSG00000092439.9|transient receptor potential cation channel, subfamily M, member 7
hg19_v2_chr1_+_213123915_213123955	0.020666	AGCUUAU	ENST00000366968.4|VASH2|ENSG00000143494.11|vasohibin 2 	ENST00000490792.1|VASH2|ENSG00000143494.11|vasohibin 2
hg19_v2_chr16_+_12070567_12070623	0.0205727	AGCUUAU	ENST00000566228.1|SNX29|ENSG00000048471.9|sorting nexin 29
hg19_v2_chr8_-_117886955_117887105	0.0204789	AGCUUAU	ENST00000297338.2|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr16_-_20911641_20911720	0.019766	AGCUUAU	ENST00000564349.1|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000324344.4|DCUN1D3|ENSG00000188215.5|DCN1, defective in cullin neddylation 1, domain containing 3
hg19_v2_chr3_+_57741957_57742045	0.0190923	AGCUUAU	ENST00000295951.3|SLMAP|ENSG00000163681.10|sarcolemma associated protein
hg19_v2_chr6_+_142468361_142468382	0.0189939	AGCUUAU	ENST00000367630.4|VTA1|ENSG00000009844.11|vesicle (multivesicular body) trafficking 1
hg19_v2_chr17_+_60536002_60536040	0.0187181	AGCUUAU	ENST00000582809.1|TLK2|ENSG00000146872.13|tousled-like kinase 2
hg19_v2_chr5_+_154238096_154238119	0.0172186	AGCUUAU	ENST00000517568.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000524105.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000285896.6|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8
hg19_v2_chr6_-_159466136_159466184	0.01666	AGCUUAU	ENST00000367066.3|TAGAP|ENSG00000164691.12|T-cell activation RhoGTPase activating protein 	ENST00000326965.6|TAGAP|ENSG00000164691.12|T-cell activation RhoGTPase activating protein
hg19_v2_chr3_+_29322803_29322850	0.0164709	AGCUUAU	ENST00000396583.3|RBMS3|ENSG00000144642.16|RNA binding motif, single stranded interacting protein 3 	ENST00000383767.2|RBMS3|ENSG00000144642.16|RNA binding motif, single stranded interacting protein 3
hg19_v2_chr5_-_141704566_141704605	0.0164349	AGCUUAU	ENST00000344120.4|SPRY4|ENSG00000187678.8|sprouty homolog 4 (Drosophila) 	ENST00000434127.2|SPRY4|ENSG00000187678.8|sprouty homolog 4 (Drosophila)
hg19_v2_chr15_+_66161871_66161893	0.0148457	AGCUUAU	ENST00000569896.1|RAB11A|ENSG00000103769.5|RAB11A, member RAS oncogene family
hg19_v2_chr14_+_33408449_33408525	0.0145633	AGCUUAU	ENST00000346562.2|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000341321.4|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000548645.1|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000356141.4|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000357798.5|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3
hg19_v2_chr13_-_41706864_41706963	0.0138797	AGCUUAU	ENST00000379485.1|KBTBD6|ENSG00000165572.6|kelch repeat and BTB (POZ) domain containing 6 	ENST00000499385.2|KBTBD6|ENSG00000165572.6|kelch repeat and BTB (POZ) domain containing 6
hg19_v2_chr11_-_110167352_110167447	0.0138454	AGCUUAU	ENST00000533991.1|RDX|ENSG00000137710.10|radixin 	ENST00000528498.1|RDX|ENSG00000137710.10|radixin 	ENST00000405097.1|RDX|ENSG00000137710.10|radixin 	ENST00000528900.1|RDX|ENSG00000137710.10|radixin 	ENST00000530301.1|RDX|ENSG00000137710.10|radixin 	ENST00000343115.4|RDX|ENSG00000137710.10|radixin
hg19_v2_chr7_+_11013491_11013553	0.0127962	AGCUUAU	ENST00000403050.3|PHF14|ENSG00000106443.10|PHD finger protein 14 	ENST00000445996.2|PHF14|ENSG00000106443.10|PHD finger protein 14
hg19_v2_chr11_+_32851487_32851496	0.0127148	AGCUUAU	ENST00000257836.3|PRRG4|ENSG00000135378.3|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
hg19_v2_chr17_+_36452989_36453152	0.0122271	AGCUUAU	ENST00000312513.5|MRPL45|ENSG00000174100.5|mitochondrial ribosomal protein L45 	ENST00000582535.1|MRPL45|ENSG00000174100.5|mitochondrial ribosomal protein L45
hg19_v2_chr10_-_119134918_119134986	0.0114849	AGCUUAU	ENST00000334464.5|PDZD8|ENSG00000165650.7|PDZ domain containing 8
hg19_v2_chr5_-_168006591_168006638	0.0101294	AGCUUAU	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr18_+_59854480_59854551	0.0100536	AGCUUAU	ENST00000256858.6|KIAA1468|ENSG00000134444.9|KIAA1468 	ENST00000398130.2|KIAA1468|ENSG00000134444.9|KIAA1468
hg19_v2_chr7_-_81399438_81399514	0.00971879	AGCUUAU	ENST00000222390.5|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr9_+_36036430_36036430	0.00927404	AGCUUAU	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chr12_+_22778009_22778112	0.00864979	AGCUUAU	ENST00000266517.4|ETNK1|ENSG00000139163.11|ethanolamine kinase 1 	ENST00000335148.3|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr1_+_224301787_224301836	0.00814687	AGCUUAU	ENST00000366862.5|FBXO28|ENSG00000143756.7|F-box protein 28 	ENST00000424254.2|FBXO28|ENSG00000143756.7|F-box protein 28
hg19_v2_chr12_+_53848505_53848532	0.00758378	AGCUUAU	ENST00000552819.1|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000455667.3|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2
hg19_v2_chr4_+_48018781_48018816	0.00596611	AGCUUAU	ENST00000295461.5|NIPAL1|ENSG00000163293.7|NIPA-like domain containing 1
hg19_v2_chr8_+_56014949_56015048	0.00583546	AGCUUAU	ENST00000327381.6|XKR4|ENSG00000206579.7|XK, Kell blood group complex subunit-related family, member 4
hg19_v2_chr7_+_89975979_89976052	0.00529443	AGCUUAU	ENST00000257659.8|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative) 	ENST00000222511.6|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative) 	ENST00000417207.1|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative)
hg19_v2_chr3_-_160283348_160283376	0.00450681	AGCUUAU	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr16_+_4364762_4364762	0.00393312	AGCUUAU	ENST00000262366.3|GLIS2|ENSG00000126603.4|GLIS family zinc finger 2
hg19_v2_chr9_+_15553055_15553101	0.00359219	AGCUUAU	ENST00000380701.3|CCDC171|ENSG00000164989.11|coiled-coil domain containing 171
hg19_v2_chr4_-_102268628_102268693	0.00358968	AGCUUAU	ENST00000323055.6|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme 	ENST00000512215.1|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme 	ENST00000394854.3|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme
hg19_v2_chr8_+_9413410_9413451	0.0034708	AGCUUAU	ENST00000520408.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000310430.6|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000522110.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
hg19_v2_chr5_-_89770582_89770603	0.00313387	AGCUUAU	ENST00000316610.6|MBLAC2|ENSG00000176055.9|metallo-beta-lactamase domain containing 2
hg19_v2_chr7_-_92463210_92463231	0.00307545	AGCUUAU	ENST00000265734.4|CDK6|ENSG00000105810.5|cyclin-dependent kinase 6
hg19_v2_chr4_-_100867864_100867889	0.00299756	AGCUUAU	ENST00000442697.2|DNAJB14|ENSG00000164031.12|DnaJ (Hsp40) homolog, subfamily B, member 14
hg19_v2_chr9_-_16870704_16870841	0.00233727	AGCUUAU	ENST00000380672.4|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380667.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380666.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000486514.1|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chr17_+_35766965_35767030	0.00232343	AGCUUAU	ENST00000394395.2|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000589153.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000586023.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A
hg19_v2_chr14_+_29234870_29235050	0.00223175	AGCUUAU	ENST00000382535.3|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr10_-_75910789_75910821	0.00221727	AGCUUAU	ENST00000355264.4|AP3M1|ENSG00000185009.8|adaptor-related protein complex 3, mu 1 subunit
hg19_v2_chr4_+_38665810_38665827	0.00213287	AGCUUAU	ENST00000261438.5|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic) 	ENST00000514033.1|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic)
hg19_v2_chr2_+_70314579_70314590	0.00211493	AGCUUAU	ENST00000303577.5|PCBP1|ENSG00000169564.5|poly(rC) binding protein 1
hg19_v2_chrX_-_20284958_20285039	0.00206594	AGCUUAU	ENST00000379565.3|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chr7_+_138916231_138916231	0.000980566	AGCUUAU	ENST00000473989.3|UBN2|ENSG00000157741.10|ubinuclein 2 	ENST00000288561.8|UBN2|ENSG00000157741.10|ubinuclein 2
hg19_v2_chr5_-_150080472_150080669	0.000919593	AGCUUAU	ENST00000521464.1|RBM22|ENSG00000086589.7|RNA binding motif protein 22 	ENST00000518917.1|RBM22|ENSG00000086589.7|RNA binding motif protein 22 	ENST00000447771.2|RBM22|ENSG00000086589.7|RNA binding motif protein 22 	ENST00000540000.1|RBM22|ENSG00000086589.7|RNA binding motif protein 22 	ENST00000199814.4|RBM22|ENSG00000086589.7|RNA binding motif protein 22
hg19_v2_chr10_-_35930219_35930362	0.000647609	AGCUUAU	ENST00000374694.1|FZD8|ENSG00000177283.4|frizzled family receptor 8
hg19_v2_chr1_+_39456895_39456986	0.000567341	AGCUUAU	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr1_+_15853308_15853413	0.000294474	AGCUUAU	ENST00000375838.1|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENST00000375847.3|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENST00000375849.1|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16
