hg19_v2_chr4_-_149365827_149365870	2.13669	AAUGCCC	ENST00000344721.4|NR3C2|ENSG00000151623.10|nuclear receptor subfamily 3, group C, member 2
hg19_v2_chr1_-_46598284_46598356	1.3131	AAUGCCC	ENST00000423209.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000262741.5|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr17_+_68165657_68165688	0.938794	AAUGCCC	ENST00000243457.3|KCNJ2|ENSG00000123700.4|potassium inwardly-rectifying channel, subfamily J, member 2
hg19_v2_chr6_-_134639180_134639220	0.77059	AAUGCCC	ENST00000367858.5|SGK1|ENSG00000118515.7|serum/glucocorticoid regulated kinase 1
hg19_v2_chr1_+_61547894_61547980	0.593873	AAUGCCC	ENST00000403491.3|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr3_+_23986748_23986761	0.55717	AAUGCCC	ENST00000312521.4|NR1D2|ENSG00000174738.8|nuclear receptor subfamily 1, group D, member 2
hg19_v2_chr17_+_55333876_55333939	0.5483	AAUGCCC	ENST00000284073.2|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chr11_+_2466218_2466255	0.49283	AAUGCCC	ENST00000155840.5|KCNQ1|ENSG00000053918.11|potassium voltage-gated channel, KQT-like subfamily, member 1
hg19_v2_chr20_-_39317868_39317884	0.45494	AAUGCCC	ENST00000373313.2|MAFB|ENSG00000204103.2|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B
hg19_v2_chr5_-_100238956_100238994	0.401899	AAUGCCC	ENST00000231461.5|ST8SIA4|ENSG00000113532.8|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
hg19_v2_chr6_+_16129308_16129402	0.353584	AAUGCCC	ENST00000356840.3|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein 	ENST00000349606.4|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein
hg19_v2_chr12_-_89918522_89918588	0.349958	AAUGCCC	ENST00000529983.2|GALNT4|ENSG00000257594.2|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)
hg19_v2_chr12_-_89919965_89919978	0.343845	AAUGCCC	ENST00000548729.1|POC1B-GALNT4|ENSG00000259075.2|POC1B-GALNT4 readthrough
hg19_v2_chr5_+_172483347_172483407	0.334829	AAUGCCC	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr6_-_46138676_46138726	0.332196	AAUGCCC	ENST00000371383.2|ENPP5|ENSG00000112796.5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 	ENST00000230565.3|ENPP5|ENSG00000112796.5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)
hg19_v2_chr5_+_149109825_149109907	0.303236	AAUGCCC	ENST00000360453.4|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta 	ENST00000394320.3|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta 	ENST00000309241.5|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta
hg19_v2_chr10_-_62149433_62149488	0.286017	AAUGCCC	ENST00000280772.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr2_-_157189180_157189290	0.274981	AAUGCCC	ENST00000539077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000424077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000426264.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000339562.4|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000421709.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2
hg19_v2_chr8_+_28351707_28351781	0.273869	AAUGCCC	ENST00000537916.1|FZD3|ENSG00000104290.6|frizzled family receptor 3 	ENST00000523546.1|FZD3|ENSG00000104290.6|frizzled family receptor 3 	ENST00000240093.3|FZD3|ENSG00000104290.6|frizzled family receptor 3
hg19_v2_chr12_+_74931551_74931656	0.25977	AAUGCCC	ENST00000519948.2|ATXN7L3B|ENSG00000253719.2|ataxin 7-like 3B
hg19_v2_chr5_+_112312416_112312440	0.257529	AAUGCCC	ENST00000389063.2|DCP2|ENSG00000172795.11|decapping mRNA 2
hg19_v2_chr6_-_111804393_111804436	0.241837	AAUGCCC	ENST00000368802.3|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit 	ENST00000368805.1|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit
hg19_v2_chr10_-_32636106_32636150	0.230523	AAUGCCC	ENST00000263062.8|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila) 	ENST00000319778.6|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila)
hg19_v2_chr5_-_90679145_90679176	0.2284	AAUGCCC	ENST00000265138.3|ARRDC3|ENSG00000113369.4|arrestin domain containing 3
hg19_v2_chr17_+_58677539_58677610	0.227918	AAUGCCC	ENST00000305921.3|PPM1D|ENSG00000170836.7|protein phosphatase, Mg2+/Mn2+ dependent, 1D
hg19_v2_chr1_-_91487013_91487070	0.225228	AAUGCCC	ENST00000347275.5|ZNF644|ENSG00000122482.16|zinc finger protein 644 	ENST00000370440.1|ZNF644|ENSG00000122482.16|zinc finger protein 644
hg19_v2_chr2_-_190649082_190649102	0.217629	AAUGCCC	ENST00000392350.3|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae) 	ENST00000392349.4|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae)
hg19_v2_chr12_-_15942309_15942330	0.209746	AAUGCCC	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr11_+_34642656_34642682	0.195808	AAUGCCC	ENST00000257831.3|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000450654.2|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr14_-_61190754_61190852	0.195443	AAUGCCC	ENST00000216513.4|SIX4|ENSG00000100625.8|SIX homeobox 4
hg19_v2_chr17_+_4613918_4614000	0.184184	AAUGCCC	ENST00000574954.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000346341.2|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000572457.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000381488.6|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000412477.3|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000571428.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000575877.1|ARRB2|ENSG00000141480.13|arrestin, beta 2
hg19_v2_chr2_+_46926048_46926095	0.18177	AAUGCCC	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr19_+_33166313_33166313	0.176935	AAUGCCC	ENST00000334176.3|RGS9BP|ENSG00000186326.3|regulator of G protein signaling 9 binding protein
hg19_v2_chr17_-_27621125_27621143	0.171944	AAUGCCC	ENST00000579665.1|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2 	ENST00000225388.4|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2
hg19_v2_chr2_+_179345173_179345221	0.166507	AAUGCCC	ENST00000234453.5|PLEKHA3|ENSG00000116095.6|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3
hg19_v2_chr9_-_6007787_6007957	0.165793	AAUGCCC	ENST00000399933.3|KIAA2026|ENSG00000183354.7|KIAA2026 	ENST00000381461.2|KIAA2026|ENSG00000183354.7|KIAA2026 	ENST00000513355.2|KIAA2026|ENSG00000183354.7|KIAA2026
hg19_v2_chr15_-_64995399_64995480	0.162372	AAUGCCC	ENST00000559753.1|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000560258.2|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000559912.2|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000326005.6|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2
hg19_v2_chr4_-_11431389_11431389	0.157937	AAUGCCC	ENST00000002596.5|HS3ST1|ENSG00000002587.5|heparan sulfate (glucosamine) 3-O-sulfotransferase 1
hg19_v2_chr3_-_11762202_11762226	0.157478	AAUGCCC	ENST00000445411.1|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila) 	ENST00000404339.1|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila) 	ENST00000273038.3|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr11_+_64073699_64073918	0.149891	AAUGCCC	ENST00000405666.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha 	ENST00000468670.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha
hg19_v2_chr12_-_42538657_42538720	0.146635	AAUGCCC	ENST00000398675.3|GXYLT1|ENSG00000151233.6|glucoside xylosyltransferase 1
hg19_v2_chr17_-_27278304_27278408	0.146297	AAUGCCC	ENST00000577226.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr19_+_50094866_50094927	0.143988	AAUGCCC	ENST00000418929.2|PRR12|ENSG00000126464.9|proline rich 12
hg19_v2_chr17_-_16118835_16118867	0.140738	AAUGCCC	ENST00000582357.1|NCOR1|ENSG00000141027.16|nuclear receptor corepressor 1 	ENST00000436828.1|NCOR1|ENSG00000141027.16|nuclear receptor corepressor 1 	ENST00000411510.1|NCOR1|ENSG00000141027.16|nuclear receptor corepressor 1 	ENST00000268712.3|NCOR1|ENSG00000141027.16|nuclear receptor corepressor 1
hg19_v2_chr17_-_78009647_78009681	0.138589	AAUGCCC	ENST00000310924.2|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16
hg19_v2_chr13_-_53024725_53024809	0.138102	AAUGCCC	ENST00000378060.4|VPS36|ENSG00000136100.8|vacuolar protein sorting 36 homolog (S. cerevisiae)
hg19_v2_chr12_-_49449107_49449107	0.138002	AAUGCCC	ENST00000301067.7|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr10_+_180987_181009	0.12973	AAUGCCC	ENST00000381591.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chrX_+_69664706_69664819	0.128841	AAUGCCC	ENST00000194900.4|DLG3|ENSG00000082458.7|discs, large homolog 3 (Drosophila) 	ENST00000374360.3|DLG3|ENSG00000082458.7|discs, large homolog 3 (Drosophila)
hg19_v2_chr3_-_79068594_79068627	0.123255	AAUGCCC	ENST00000436010.2|ROBO1|ENSG00000169855.15|roundabout, axon guidance receptor, homolog 1 (Drosophila)
hg19_v2_chr7_+_138145076_138145116	0.122954	AAUGCCC	ENST00000343526.4|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr3_-_33481835_33481905	0.121056	AAUGCCC	ENST00000283629.3|UBP1|ENSG00000153560.7|upstream binding protein 1 (LBP-1a)
hg19_v2_chr10_-_98346801_98346812	0.120052	AAUGCCC	ENST00000371142.4|TM9SF3|ENSG00000077147.10|transmembrane 9 superfamily member 3
hg19_v2_chr11_-_57283159_57283259	0.117616	AAUGCCC	ENST00000533263.1|SLC43A1|ENSG00000149150.4|solute carrier family 43 (amino acid system L transporter), member 1 	ENST00000278426.3|SLC43A1|ENSG00000149150.4|solute carrier family 43 (amino acid system L transporter), member 1
hg19_v2_chr2_-_153574480_153574552	0.111946	AAUGCCC	ENST00000410080.1|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
hg19_v2_chr12_+_68042495_68042508	0.111209	AAUGCCC	ENST00000344096.3|DYRK2|ENSG00000127334.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
hg19_v2_chr16_+_75032901_75032974	0.108149	AAUGCCC	ENST00000335325.4|ZNRF1|ENSG00000186187.7|zinc and ring finger 1, E3 ubiquitin protein ligase 	ENST00000320619.6|ZNRF1|ENSG00000186187.7|zinc and ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr7_+_139026057_139026130	0.106832	AAUGCCC	ENST00000541515.3|LUC7L2|ENSG00000269955.2|LUC7-like 2 (S. cerevisiae)
hg19_v2_chr3_-_15901278_15901354	0.104312	AAUGCCC	ENST00000399451.2|ANKRD28|ENSG00000206560.6|ankyrin repeat domain 28
hg19_v2_chr3_-_21792838_21792927	0.10253	AAUGCCC	ENST00000281523.2|ZNF385D|ENSG00000151789.5|zinc finger protein 385D
hg19_v2_chr2_+_46524537_46524553	0.100078	AAUGCCC	ENST00000263734.3|EPAS1|ENSG00000116016.9|endothelial PAS domain protein 1
hg19_v2_chr12_+_56401268_56401443	0.0999741	AAUGCCC	ENST00000262032.5|IKZF4|ENSG00000123411.10|IKAROS family zinc finger 4 (Eos)
hg19_v2_chr13_-_21476900_21476949	0.0981182	AAUGCCC	ENST00000400602.2|XPO4|ENSG00000132953.12|exportin 4 	ENST00000255305.6|XPO4|ENSG00000132953.12|exportin 4
hg19_v2_chrX_-_3631635_3631698	0.095676	AAUGCCC	ENST00000262848.5|PRKX|ENSG00000183943.5|protein kinase, X-linked
hg19_v2_chr16_+_53088885_53088961	0.0955784	AAUGCCC	ENST00000566029.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9 	ENST00000447540.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr7_+_94285637_94285689	0.0950317	AAUGCCC	ENST00000482108.1|PEG10|ENSG00000242265.1|paternally expressed 10 	ENST00000488574.1|PEG10|ENSG00000242265.1|paternally expressed 10
hg19_v2_chr3_-_47823298_47823423	0.09436	AAUGCCC	ENST00000254480.5|SMARCC1|ENSG00000173473.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
hg19_v2_chr9_+_114659046_114659102	0.0936219	AAUGCCC	ENST00000374279.3|UGCG|ENSG00000148154.5|UDP-glucose ceramide glucosyltransferase
hg19_v2_chr10_+_1095416_1095482	0.0901838	AAUGCCC	ENST00000358220.1|WDR37|ENSG00000047056.10|WD repeat domain 37
hg19_v2_chr2_-_240322643_240322661	0.0882126	AAUGCCC	ENST00000345617.3|HDAC4|ENSG00000068024.12|histone deacetylase 4
hg19_v2_chr17_-_40273348_40273397	0.0877733	AAUGCCC	ENST00000225916.5|KAT2A|ENSG00000108773.6|K(lysine) acetyltransferase 2A
hg19_v2_chr3_+_152552685_152552736	0.0874532	AAUGCCC	ENST00000305097.3|P2RY1|ENSG00000169860.4|purinergic receptor P2Y, G-protein coupled, 1
hg19_v2_chr5_+_56205081_56205092	0.0867833	AAUGCCC	ENST00000285947.2|SETD9|ENSG00000155542.7|SET domain containing 9 	ENST00000541720.1|SETD9|ENSG00000155542.7|SET domain containing 9
hg19_v2_chr1_-_39339777_39339777	0.0863847	AAUGCCC	ENST00000397572.2|MYCBP|ENSG00000214114.4|MYC binding protein
hg19_v2_chr9_-_136933134_136933154	0.0862351	AAUGCCC	ENST00000303407.7|BRD3|ENSG00000169925.12|bromodomain containing 3
hg19_v2_chr8_-_38239732_38239796	0.0858133	AAUGCCC	ENST00000534155.1|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000433384.2|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000317025.8|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000316985.3|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1
hg19_v2_chr7_-_150652924_150652994	0.084703	AAUGCCC	ENST00000330883.4|KCNH2|ENSG00000055118.10|potassium voltage-gated channel, subfamily H (eag-related), member 2
hg19_v2_chr10_+_22610124_22610188	0.0836063	AAUGCCC	ENST00000376663.3|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chr11_-_77532050_77532066	0.0811459	AAUGCCC	ENST00000308488.6|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr4_+_38665810_38665827	0.0811299	AAUGCCC	ENST00000261438.5|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic) 	ENST00000514033.1|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic)
hg19_v2_chr12_-_75905374_75905420	0.079649	AAUGCCC	ENST00000438169.2|KRR1|ENSG00000111615.8|KRR1, small subunit (SSU) processome component, homolog (yeast) 	ENST00000229214.4|KRR1|ENSG00000111615.8|KRR1, small subunit (SSU) processome component, homolog (yeast)
hg19_v2_chr4_-_103748880_103749047	0.0795697	AAUGCCC	ENST00000453744.2|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3 	ENST00000349311.8|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3
hg19_v2_chr9_-_117880477_117880536	0.0755911	AAUGCCC	ENST00000534839.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000340094.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000535648.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000346706.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000345230.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000350763.4|TNC|ENSG00000041982.10|tenascin C
hg19_v2_chr9_+_130548297_130548382	0.0711968	AAUGCCC	ENST00000373264.4|CDK9|ENSG00000136807.7|cyclin-dependent kinase 9
hg19_v2_chr7_-_141401951_141401985	0.0687867	AAUGCCC	ENST00000536163.1|KIAA1147|ENSG00000257093.2|KIAA1147
hg19_v2_chr1_-_78225482_78225544	0.0679625	AAUGCCC	ENST00000524778.1|USP33|ENSG00000077254.10|ubiquitin specific peptidase 33 	ENST00000370794.3|USP33|ENSG00000077254.10|ubiquitin specific peptidase 33 	ENST00000370793.1|USP33|ENSG00000077254.10|ubiquitin specific peptidase 33 	ENST00000370792.3|USP33|ENSG00000077254.10|ubiquitin specific peptidase 33
hg19_v2_chr5_-_59189545_59189625	0.0666766	AAUGCCC	ENST00000340635.6|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr3_+_150804676_150804697	0.06667	AAUGCCC	ENST00000474524.1|MED12L|ENSG00000144893.8|mediator complex subunit 12-like 	ENST00000273432.4|MED12L|ENSG00000144893.8|mediator complex subunit 12-like
hg19_v2_chr17_+_28804380_28804460	0.0657079	AAUGCCC	ENST00000225724.5|GOSR1|ENSG00000108587.10|golgi SNAP receptor complex member 1 	ENST00000451249.2|GOSR1|ENSG00000108587.10|golgi SNAP receptor complex member 1 	ENST00000467337.2|GOSR1|ENSG00000108587.10|golgi SNAP receptor complex member 1 	ENST00000581721.1|GOSR1|ENSG00000108587.10|golgi SNAP receptor complex member 1 	ENST00000414833.2|GOSR1|ENSG00000108587.10|golgi SNAP receptor complex member 1
hg19_v2_chr7_-_111846435_111846471	0.0646138	AAUGCCC	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr2_-_180129484_180129574	0.0631968	AAUGCCC	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr2_+_61108650_61108687	0.0622674	AAUGCCC	ENST00000295025.8|REL|ENSG00000162924.9|v-rel avian reticuloendotheliosis viral oncogene homolog
hg19_v2_chr11_-_68609377_68609399	0.0565745	AAUGCCC	ENST00000265641.5|CPT1A|ENSG00000110090.8|carnitine palmitoyltransferase 1A (liver) 	ENST00000376618.2|CPT1A|ENSG00000110090.8|carnitine palmitoyltransferase 1A (liver)
hg19_v2_chr19_+_42349092_42349153	0.054544	AAUGCCC	ENST00000269945.3|DMRTC2|ENSG00000142025.11|DMRT-like family C2 	ENST00000596258.1|DMRTC2|ENSG00000142025.11|DMRT-like family C2
hg19_v2_chr10_+_22605304_22605372	0.0545368	AAUGCCC	ENST00000475460.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000602390.1|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000456711.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000444869.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000489125.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough
hg19_v2_chr2_+_131862900_131862926	0.054373	AAUGCCC	ENST00000438882.2|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2 	ENST00000538982.1|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2 	ENST00000404460.1|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2
hg19_v2_chr1_+_203274639_203274664	0.053954	AAUGCCC	ENST00000290551.4|BTG2|ENSG00000159388.5|BTG family, member 2
hg19_v2_chr12_+_69864129_69864222	0.0539219	AAUGCCC	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr1_-_35658736_35658754	0.0535925	AAUGCCC	ENST00000357214.5|SFPQ|ENSG00000116560.6|splicing factor proline/glutamine-rich
hg19_v2_chr2_-_208634287_208634439	0.0525926	AAUGCCC	ENST00000295417.3|FZD5|ENSG00000163251.3|frizzled family receptor 5
hg19_v2_chr8_+_124780672_124780764	0.0516696	AAUGCCC	ENST00000521166.1|FAM91A1|ENSG00000176853.11|family with sequence similarity 91, member A1 	ENST00000334705.7|FAM91A1|ENSG00000176853.11|family with sequence similarity 91, member A1
hg19_v2_chr9_-_14314066_14314075	0.0496183	AAUGCCC	ENST00000397575.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr19_+_19431490_19431795	0.0492964	AAUGCCC	ENST00000392313.6|MAU2|ENSG00000129933.16|MAU2 sister chromatid cohesion factor 	ENST00000262815.8|MAU2|ENSG00000129933.16|MAU2 sister chromatid cohesion factor 	ENST00000609122.1|MAU2|ENSG00000129933.16|MAU2 sister chromatid cohesion factor
hg19_v2_chr8_-_57123815_57123867	0.0476885	AAUGCCC	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr6_+_34857019_34857117	0.0469911	AAUGCCC	ENST00000360359.3|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A 	ENST00000535627.1|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A
hg19_v2_chr12_+_27396901_27397108	0.0468209	AAUGCCC	ENST00000541191.1|STK38L|ENSG00000211455.3|serine/threonine kinase 38 like 	ENST00000389032.3|STK38L|ENSG00000211455.3|serine/threonine kinase 38 like
hg19_v2_chr3_-_125094093_125094198	0.0453963	AAUGCCC	ENST00000484491.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000492394.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000471196.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000468369.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000544464.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000485866.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000360647.4|ZNF148|ENSG00000163848.14|zinc finger protein 148
hg19_v2_chr3_+_38495333_38495422	0.0448701	AAUGCCC	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr9_+_131445928_131445934	0.0439345	AAUGCCC	ENST00000372692.4|SET|ENSG00000119335.12|SET nuclear oncogene
hg19_v2_chr2_-_200322723_200322819	0.0431436	AAUGCCC	ENST00000417098.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr2_+_134877740_134877762	0.0417774	AAUGCCC	ENST00000409645.1|MGAT5|ENSG00000152127.4|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase
hg19_v2_chrX_-_83442915_83442985	0.0415172	AAUGCCC	ENST00000262752.2|RPS6KA6|ENSG00000072133.6|ribosomal protein S6 kinase, 90kDa, polypeptide 6 	ENST00000543399.1|RPS6KA6|ENSG00000072133.6|ribosomal protein S6 kinase, 90kDa, polypeptide 6
hg19_v2_chr5_-_39074479_39074515	0.0402699	AAUGCCC	ENST00000514735.1|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000296782.5|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000357387.3|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2
hg19_v2_chr5_-_32444828_32444872	0.0391007	AAUGCCC	ENST00000265069.8|ZFR|ENSG00000056097.11|zinc finger RNA binding protein
hg19_v2_chr5_-_175964366_175964429	0.0372889	AAUGCCC	ENST00000274811.4|RNF44|ENSG00000146083.7|ring finger protein 44
hg19_v2_chr9_-_127905736_127905815	0.0371934	AAUGCCC	ENST00000336505.6|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion 	ENST00000373549.4|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion
hg19_v2_chr2_-_64881018_64881064	0.0362498	AAUGCCC	ENST00000313349.3|SERTAD2|ENSG00000179833.4|SERTA domain containing 2
hg19_v2_chr1_+_145611010_145611046	0.0360056	AAUGCCC	ENST00000369291.5|RNF115|ENSG00000121848.9|ring finger protein 115
hg19_v2_chr7_+_104654623_104654669	0.0339619	AAUGCCC	ENST00000311117.3|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000334877.4|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000257745.4|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000334914.7|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000478990.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000495267.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000476671.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E
hg19_v2_chr6_+_30294612_30294754	0.0337867	AAUGCCC	ENST00000440271.1|TRIM39|ENSG00000204599.10|tripartite motif containing 39 	ENST00000396551.3|TRIM39|ENSG00000204599.10|tripartite motif containing 39 	ENST00000376656.4|TRIM39|ENSG00000204599.10|tripartite motif containing 39 	ENST00000540416.1|TRIM39|ENSG00000204599.10|tripartite motif containing 39 	ENST00000428728.1|TRIM39|ENSG00000204599.10|tripartite motif containing 39 	ENST00000396548.1|TRIM39|ENSG00000204599.10|tripartite motif containing 39 	ENST00000428404.1|TRIM39|ENSG00000204599.10|tripartite motif containing 39
hg19_v2_chr7_+_139044621_139044725	0.0324414	AAUGCCC	ENST00000354926.4|C7orf55-LUC7L2|ENSG00000146963.13|C7orf55-LUC7L2 readthrough
hg19_v2_chr9_+_128024067_128024190	0.0317162	AAUGCCC	ENST00000461379.1|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000394084.1|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000394105.2|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000470056.1|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000394104.2|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000265956.4|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000394083.2|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000495955.1|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000467750.1|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000297933.6|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1
hg19_v2_chr11_-_18656028_18656040	0.0314459	AAUGCCC	ENST00000336349.5|SPTY2D1|ENSG00000179119.10|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
hg19_v2_chr1_-_154600421_154600480	0.0307203	AAUGCCC	ENST00000368471.3|ADAR|ENSG00000160710.11|adenosine deaminase, RNA-specific 	ENST00000292205.5|ADAR|ENSG00000160710.11|adenosine deaminase, RNA-specific
hg19_v2_chr1_+_202976493_202976530	0.0293147	AAUGCCC	ENST00000367242.3|TMEM183A|ENSG00000163444.7|transmembrane protein 183A
hg19_v2_chr1_-_156051789_156051838	0.0287871	AAUGCCC	ENST00000532414.2|MEX3A|ENSG00000254726.2|mex-3 RNA binding family member A
hg19_v2_chr1_+_29063271_29063283	0.028692	AAUGCCC	ENST00000373812.3|YTHDF2|ENSG00000198492.10|YTH domain family, member 2
hg19_v2_chr14_-_21905395_21905419	0.027272	AAUGCCC	ENST00000430710.3|CHD8|ENSG00000100888.8|chromodomain helicase DNA binding protein 8 	ENST00000553283.1|CHD8|ENSG00000100888.8|chromodomain helicase DNA binding protein 8
hg19_v2_chr1_+_2985760_2985775	0.0267751	AAUGCCC	ENST00000378391.2|PRDM16|ENSG00000142611.12|PR domain containing 16 	ENST00000514189.1|PRDM16|ENSG00000142611.12|PR domain containing 16 	ENST00000270722.5|PRDM16|ENSG00000142611.12|PR domain containing 16
hg19_v2_chr20_+_60697480_60697583	0.0258994	AAUGCCC	ENST00000370915.1|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000253001.4|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000400318.2|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279068.6|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279069.7|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr12_+_72666407_72666463	0.0258519	AAUGCCC	ENST00000261180.4|TRHDE|ENSG00000072657.4|thyrotropin-releasing hormone degrading enzyme
hg19_v2_chr15_+_68346501_68346550	0.0236142	AAUGCCC	ENST00000249636.6|PIAS1|ENSG00000033800.9|protein inhibitor of activated STAT, 1
hg19_v2_chr15_+_96873921_96873946	0.0227637	AAUGCCC	ENST00000394166.3|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr1_+_97187318_97187380	0.0218811	AAUGCCC	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr14_-_36989427_36989442	0.0208851	AAUGCCC	ENST00000354822.5|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr21_-_46293586_46293641	0.0205511	AAUGCCC	ENST00000445724.2|PTTG1IP|ENSG00000183255.7|pituitary tumor-transforming 1 interacting protein 	ENST00000397887.3|PTTG1IP|ENSG00000183255.7|pituitary tumor-transforming 1 interacting protein
hg19_v2_chr5_+_122181184_122181213	0.0196411	AAUGCCC	ENST00000513881.1|SNX24|ENSG00000064652.6|sorting nexin 24
hg19_v2_chr17_+_16284104_16284245	0.0188743	AAUGCCC	ENST00000577958.1|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000302182.3|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000577640.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr17_+_35766965_35767030	0.0170429	AAUGCCC	ENST00000394395.2|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000589153.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000586023.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A
hg19_v2_chr7_+_97736197_97736211	0.0162876	AAUGCCC	ENST00000297293.5|LMTK2|ENSG00000164715.5|lemur tyrosine kinase 2
hg19_v2_chr4_-_74124502_74124523	0.0162721	AAUGCCC	ENST00000358602.4|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17 	ENST00000330838.6|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17 	ENST00000561029.1|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17
hg19_v2_chr17_-_19771216_19771230	0.0161682	AAUGCCC	ENST00000395544.4|ULK2|ENSG00000083290.15|unc-51 like autophagy activating kinase 2
hg19_v2_chrX_+_23352133_23352229	0.0155656	AAUGCCC	ENST00000379361.4|PTCHD1|ENSG00000165186.9|patched domain containing 1
hg19_v2_chr16_-_67840442_67840555	0.0152632	AAUGCCC	ENST00000536251.1|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000448631.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000602677.1|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000411657.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000425512.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000317506.3|RANBP10|ENSG00000141084.6|RAN binding protein 10
hg19_v2_chr5_-_89825328_89825422	0.0135311	AAUGCCC	ENST00000500869.2|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000315948.6|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000509384.1|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3
hg19_v2_chr4_+_41992489_41992561	0.013389	AAUGCCC	ENST00000264451.7|SLC30A9|ENSG00000014824.9|solute carrier family 30 (zinc transporter), member 9
hg19_v2_chr10_-_103874692_103874715	0.0124263	AAUGCCC	ENST00000361198.5|LDB1|ENSG00000198728.6|LIM domain binding 1
hg19_v2_chr13_+_93879085_93879136	0.0119368	AAUGCCC	ENST00000377047.4|GPC6|ENSG00000183098.6|glypican 6
hg19_v2_chr18_+_32073253_32073339	0.0116965	AAUGCCC	ENST00000283365.9|DTNA|ENSG00000134769.17|dystrobrevin, alpha 	ENST00000596745.1|DTNA|ENSG00000134769.17|dystrobrevin, alpha 	ENST00000315456.6|DTNA|ENSG00000134769.17|dystrobrevin, alpha
hg19_v2_chr1_-_205719295_205719404	0.0103389	AAUGCCC	ENST00000367142.4|NUCKS1|ENSG00000069275.12|nuclear casein kinase and cyclin-dependent kinase substrate 1
hg19_v2_chr11_-_102714534_102714534	0.00964886	AAUGCCC	ENST00000299855.5|MMP3|ENSG00000149968.7|matrix metallopeptidase 3 (stromelysin 1, progelatinase)
hg19_v2_chr1_+_161284047_161284180	0.00956871	AAUGCCC	ENST00000367975.2|SDHC|ENSG00000143252.10|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa 	ENST00000342751.4|SDHC|ENSG00000143252.10|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa 	ENST00000432287.2|SDHC|ENSG00000143252.10|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa 	ENST00000392169.2|SDHC|ENSG00000143252.10|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa 	ENST00000513009.1|SDHC|ENSG00000143252.10|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa
hg19_v2_chr12_-_31479045_31479074	0.00914245	AAUGCCC	ENST00000539409.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A 	ENST00000395766.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr6_-_3457256_3457292	0.0076932	AAUGCCC	ENST00000436008.2|SLC22A23|ENSG00000137266.10|solute carrier family 22, member 23
hg19_v2_chr11_+_66036004_66036079	0.00563568	AAUGCCC	ENST00000311481.6|RAB1B|ENSG00000174903.10|RAB1B, member RAS oncogene family 	ENST00000527397.1|RAB1B|ENSG00000174903.10|RAB1B, member RAS oncogene family
hg19_v2_chrX_+_73641286_73641400	0.00450463	AAUGCCC	ENST00000587091.1|SLC16A2|ENSG00000147100.5|solute carrier family 16, member 2 (thyroid hormone transporter)
hg19_v2_chr3_+_43328004_43328095	0.00288355	AAUGCCC	ENST00000454177.1|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000429705.2|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000296088.7|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000437827.1|SNRK|ENSG00000163788.9|SNF related kinase
