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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G67190
Z-value: 0.85
Transcription factors associated with AT5G67190
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G67190
|
AT5G67190 | DREB and EAR motif protein 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DEAR2 | arTal_v1_Chr5_-_26810116_26810116 | 0.57 | 1.7e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 5.80 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 5.72 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr3_-_8007836_8007836 Show fit | 4.89 |
AT3G22600.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 4.58 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr5_+_3239617_3239617 Show fit | 4.45 |
AT5G10300.2
|
methyl esterase 5 |
|
| arTal_v1_Chr1_+_10892445_10892445 Show fit | 4.44 |
AT1G30700.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr5_+_3239455_3239455 Show fit | 4.37 |
AT5G10300.1
|
methyl esterase 5 |
|
| arTal_v1_Chr3_-_1055196_1055196 Show fit | 4.23 |
AT3G04060.1
|
NAC domain containing protein 46 |
|
| arTal_v1_Chr4_+_17597110_17597110 Show fit | 4.18 |
AT4G37430.1
|
cytochrome P450, family 91, subfamily A, polypeptide 2 |
|
| arTal_v1_Chr3_-_7999552_7999552 Show fit | 4.13 |
AT3G22560.1
|
Acyl-CoA N-acyltransferases (NAT) superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G67190
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 22.7 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.3 | 16.6 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.0 | 12.2 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
| 0.0 | 11.7 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.3 | 9.0 | GO:0006995 | cellular response to nitrogen starvation(GO:0006995) |
| 2.2 | 8.8 | GO:0016139 | glycoside catabolic process(GO:0016139) |
| 2.8 | 8.4 | GO:0016110 | tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124) |
| 0.1 | 7.4 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 1.7 | 6.9 | GO:0097438 | release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438) |
| 0.3 | 6.3 | GO:0080027 | response to herbivore(GO:0080027) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 18.1 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.1 | 11.3 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.5 | 8.0 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.0 | 7.7 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 6.1 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.3 | 5.1 | GO:0031970 | organelle envelope lumen(GO:0031970) |
| 0.1 | 5.1 | GO:0008287 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
| 0.0 | 4.6 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.6 | 3.8 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.2 | 3.5 | GO:0000792 | heterochromatin(GO:0000792) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 19.6 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 12.8 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 12.1 | GO:0044212 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 11.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.0 | 10.3 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 10.1 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 1.1 | 9.8 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 2.2 | 8.8 | GO:0046593 | mandelonitrile lyase activity(GO:0046593) |
| 0.1 | 8.2 | GO:0008080 | N-acetyltransferase activity(GO:0008080) |
| 0.1 | 7.6 | GO:0043130 | ubiquitin binding(GO:0043130) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 4.7 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.7 | 2.0 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.6 | 1.7 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.3 | 0.8 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
| 0.1 | 0.6 | PID P73PATHWAY | p73 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 2.6 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.2 | 2.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.4 | 2.3 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.2 | 2.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.7 | 2.0 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.4 | 2.0 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.3 | 0.8 | REACTOME FRS2 MEDIATED CASCADE | Genes involved in FRS2-mediated cascade |
| 0.2 | 0.7 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.1 | 0.6 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.5 | 0.5 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |