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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G66940
Z-value: 0.41
Transcription factors associated with AT5G66940
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G66940
|
AT5G66940 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G66940 | arTal_v1_Chr5_-_26728715_26728715 | 0.15 | 4.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_4026733_4026733 Show fit | 0.49 |
AT1G11925.1
|
Stigma-specific Stig1 family protein |
|
| arTal_v1_Chr3_+_5471735_5471735 Show fit | 0.47 |
AT3G16150.1
|
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein |
|
| arTal_v1_Chr5_+_1153740_1153740 Show fit | 0.47 |
AT5G04200.1
|
metacaspase 9 |
|
| arTal_v1_Chr3_+_22216540_22216540 Show fit | 0.44 |
AT3G60140.2
AT3G60140.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr3_+_19417372_19417401 Show fit | 0.43 |
AT3G52370.2
AT3G52370.1 |
FASCICLIN-like arabinogalactan protein 15 precursor |
|
| arTal_v1_Chr3_-_4959704_4959704 Show fit | 0.41 |
AT3G14770.1
|
Nodulin MtN3 family protein |
|
| arTal_v1_Chr1_+_27538190_27538190 Show fit | 0.39 |
AT1G73220.1
|
organic cation/carnitine transporter1 |
|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 0.39 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_+_9825169_9825169 Show fit | 0.39 |
AT1G28130.1
|
Auxin-responsive GH3 family protein |
|
| arTal_v1_Chr1_+_9825914_9825914 Show fit | 0.39 |
AT1G28130.2
|
Auxin-responsive GH3 family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G66940
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.5 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 1.5 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 1.1 | GO:0030036 | actin cytoskeleton organization(GO:0030036) |
| 0.0 | 1.0 | GO:0009691 | cytokinin biosynthetic process(GO:0009691) |
| 0.0 | 1.0 | GO:0080092 | regulation of pollen tube growth(GO:0080092) |
| 0.0 | 1.0 | GO:0010252 | auxin homeostasis(GO:0010252) |
| 0.0 | 1.0 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.0 | 1.0 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 0.9 | GO:0045487 | diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487) |
| 0.1 | 0.9 | GO:0016119 | carotene metabolic process(GO:0016119) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 2.1 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 1.3 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 1.3 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 0.8 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.0 | 0.7 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 0.4 | GO:0005776 | autophagosome(GO:0005776) |
| 0.0 | 0.4 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 0.4 | GO:0005669 | transcription factor TFIID complex(GO:0005669) |
| 0.0 | 0.4 | GO:0000145 | exocyst(GO:0000145) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.9 | GO:0003779 | actin binding(GO:0003779) |
| 0.0 | 1.6 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 1.6 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.2 | 1.4 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.0 | 1.4 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.0 | 1.3 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 1.2 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.0 | 1.1 | GO:0005179 | hormone activity(GO:0005179) |
| 0.1 | 1.0 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.0 | 1.0 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 0.1 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 0.1 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.0 | 0.1 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.0 | 0.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.1 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.1 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
| 0.0 | 0.1 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.0 | 0.1 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.1 | 0.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.3 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.0 | 0.3 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.0 | 0.1 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.0 | 0.1 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.0 | 0.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.1 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.0 | 0.1 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
| 0.0 | 0.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |