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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G66700
Z-value: 0.69
Transcription factors associated with AT5G66700
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G66700
|
AT5G66700 | homeobox 53 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB53 | arTal_v1_Chr5_+_26634275_26634275 | -0.64 | 2.2e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 1.30 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 1.10 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr3_-_19139423_19139423 Show fit | 1.09 |
AT3G51600.1
|
lipid transfer protein 5 |
|
| arTal_v1_Chr2_-_1800472_1800472 Show fit | 1.08 |
AT2G05070.1
|
photosystem II light harvesting complex protein 2.2 |
|
| arTal_v1_Chr3_+_17228642_17228642 Show fit | 1.02 |
AT3G46780.1
|
plastid transcriptionally active 16 |
|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 1.01 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_17712203_17712203 Show fit | 0.97 |
AT5G44020.1
|
HAD superfamily, subfamily IIIB acid phosphatase |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 0.93 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr5_+_22038165_22038165 Show fit | 0.88 |
AT5G54270.1
|
light-harvesting chlorophyll B-binding protein 3 |
|
| arTal_v1_Chr1_+_26687202_26687202 Show fit | 0.87 |
AT1G70760.1
|
inorganic carbon transport protein-like protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G66700
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.2 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.1 | 3.3 | GO:0048825 | cotyledon development(GO:0048825) |
| 0.0 | 2.9 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.3 | 2.8 | GO:1990066 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 0.5 | 2.7 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.2 | 2.2 | GO:0010158 | abaxial cell fate specification(GO:0010158) |
| 0.1 | 2.1 | GO:0006284 | base-excision repair(GO:0006284) |
| 0.1 | 2.1 | GO:0016128 | phytosteroid metabolic process(GO:0016128) brassinosteroid metabolic process(GO:0016131) |
| 0.0 | 2.1 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.1 | 1.9 | GO:0009913 | epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.1 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 8.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.6 | 5.2 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.0 | 4.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 2.6 | GO:0009986 | cell surface(GO:0009986) |
| 0.1 | 2.5 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 2.0 | GO:0015934 | large ribosomal subunit(GO:0015934) |
| 0.2 | 1.9 | GO:0009522 | photosystem I(GO:0009522) |
| 0.1 | 1.7 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.2 | 1.6 | GO:0010168 | ER body(GO:0010168) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.9 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.2 | 3.4 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.0 | 3.4 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 3.4 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.0 | 3.3 | GO:0004857 | enzyme inhibitor activity(GO:0004857) |
| 0.1 | 2.5 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.0 | 2.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.0 | 2.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.8 | 2.3 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.1 | 2.0 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 0.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.6 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.4 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.3 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.2 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.1 | 0.2 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.0 | 0.1 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.0 | 0.1 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 0.8 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 0.4 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.3 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.1 | 0.3 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.2 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.0 | 0.2 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.0 | 0.2 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.0 | 0.2 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.2 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |