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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G65410
Z-value: 0.83
Transcription factors associated with AT5G65410
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G65410
|
AT5G65410 | homeobox protein 25 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB25 | arTal_v1_Chr5_+_26136002_26136002 | -0.33 | 8.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 4.97 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 3.64 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 3.55 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 3.45 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 3.19 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 2.98 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 2.92 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 2.89 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 2.87 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 2.86 |
AT1G54575.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G65410
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 33.0 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.4 | 15.5 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 11.1 | GO:0010200 | response to chitin(GO:0010200) |
| 1.4 | 9.8 | GO:0080187 | floral organ senescence(GO:0080187) |
| 0.1 | 9.0 | GO:0016311 | dephosphorylation(GO:0016311) |
| 0.7 | 8.7 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.2 | 8.5 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.0 | 7.4 | GO:0032446 | protein modification by small protein conjugation(GO:0032446) |
| 0.8 | 7.3 | GO:0045836 | positive regulation of meiotic nuclear division(GO:0045836) |
| 0.1 | 6.8 | GO:0009100 | protein glycosylation(GO:0006486) glycoprotein metabolic process(GO:0009100) glycoprotein biosynthetic process(GO:0009101) macromolecule glycosylation(GO:0043413) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 10.8 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 8.2 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 7.8 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.2 | 6.9 | GO:0016592 | mediator complex(GO:0016592) |
| 0.1 | 6.8 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 6.5 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.0 | 5.7 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.2 | 5.6 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 5.6 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.3 | 5.3 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 16.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.2 | 14.1 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 13.6 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.1 | 10.9 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 1.4 | 9.7 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.1 | 8.9 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 8.3 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 8.1 | GO:0019900 | kinase binding(GO:0019900) |
| 0.1 | 7.7 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.0 | 7.5 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 2.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.6 | 1.7 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.5 | 1.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 1.1 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.1 | 0.7 | PID CDC42 PATHWAY | CDC42 signaling events |
| 0.2 | 0.5 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.1 | 0.5 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.1 | 0.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.3 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 5.3 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 4.6 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.6 | 1.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.2 | 1.8 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.3 | 1.1 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.2 | 1.1 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.1 | 0.8 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.1 | 0.8 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 0.1 | 0.7 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.2 | 0.6 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |