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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G65310
Z-value: 1.29
Transcription factors associated with AT5G65310
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G65310
|
AT5G65310 | homeobox protein 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB5 | arTal_v1_Chr5_-_26104614_26104614 | -0.36 | 6.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 6.51 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 6.18 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 6.14 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 5.98 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 5.84 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr4_+_8392825_8392825 Show fit | 5.10 |
AT4G14630.1
|
germin-like protein 9 |
|
| arTal_v1_Chr3_-_8007836_8007836 Show fit | 5.09 |
AT3G22600.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 5.03 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr1_+_23887809_23887809 Show fit | 5.00 |
AT1G64360.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 4.94 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G65310
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 71.7 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 41.7 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.2 | 25.7 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.6 | 23.0 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.5 | 22.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.4 | 18.6 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
| 0.2 | 17.1 | GO:0031667 | response to nutrient levels(GO:0031667) |
| 3.1 | 15.3 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.2 | 14.8 | GO:0010150 | leaf senescence(GO:0010150) organ senescence(GO:0010260) |
| 0.2 | 14.8 | GO:0016579 | protein deubiquitination(GO:0016579) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 49.0 | GO:0005829 | cytosol(GO:0005829) |
| 0.2 | 30.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 24.6 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.3 | 19.0 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.2 | 15.9 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.3 | 15.5 | GO:0000323 | lytic vacuole(GO:0000323) |
| 0.1 | 14.3 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.7 | 14.2 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 14.1 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 14.1 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 83.2 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.1 | 55.3 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 29.1 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.4 | 21.0 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.4 | 18.2 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.3 | 17.8 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.3 | 16.3 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.1 | 15.5 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.2 | 14.2 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 1.8 | 12.8 | GO:0080061 | nitrilase activity(GO:0000257) hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles(GO:0016815) nitrile hydratase activity(GO:0018822) indole-3-acetonitrile nitrilase activity(GO:0080061) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 3.3 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.3 | 3.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.3 | 3.0 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.7 | 2.1 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 1.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 1.0 | 1.0 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.3 | 1.0 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.2 | 1.0 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.3 | 0.9 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.3 | 0.8 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 7.2 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.2 | 6.4 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.4 | 3.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.9 | 2.7 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.5 | 2.6 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.5 | 2.4 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.5 | 2.2 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.2 | 1.7 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.2 | 1.5 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.2 | 1.5 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |