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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G64750
Z-value: 1.05
Transcription factors associated with AT5G64750
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G64750
|
AT5G64750 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ABR1 | arTal_v1_Chr5_+_25891449_25891449 | -0.76 | 3.1e-06 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 6.79 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 6.33 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 5.95 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 5.74 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr1_-_7531108_7531108 Show fit | 5.64 |
AT1G21500.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 5.62 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_-_3357754_3357754 Show fit | 5.54 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr3_-_11013451_11013451 Show fit | 5.52 |
AT3G29030.1
|
expansin A5 |
|
| arTal_v1_Chr2_+_2199151_2199151 Show fit | 5.47 |
AT2G05790.1
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 5.39 |
AT1G55330.1
|
arabinogalactan protein 21 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G64750
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 19.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.9 | 17.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.3 | 14.6 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.1 | 12.4 | GO:0019684 | photosynthesis, light reaction(GO:0019684) |
| 0.2 | 9.8 | GO:0016485 | protein processing(GO:0016485) |
| 0.4 | 9.7 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.3 | 9.3 | GO:0042335 | cuticle development(GO:0042335) |
| 0.5 | 7.6 | GO:1902183 | regulation of shoot apical meristem development(GO:1902183) |
| 0.4 | 6.1 | GO:0010315 | auxin efflux(GO:0010315) |
| 1.8 | 5.3 | GO:0046166 | glyceraldehyde-3-phosphate biosynthetic process(GO:0046166) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 73.1 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 48.0 | GO:0009579 | thylakoid(GO:0009579) |
| 0.2 | 34.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 24.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.7 | 17.0 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.0 | 10.9 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 1.2 | 9.8 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.1 | 9.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 9.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.3 | 9.2 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 14.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.4 | 12.7 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.2 | 12.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 11.3 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.2 | 10.3 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.4 | 8.8 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.3 | 8.3 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.3 | 8.0 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.3 | 6.9 | GO:0080161 | auxin transmembrane transporter activity(GO:0080161) |
| 0.7 | 6.0 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.8 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 1.8 | PID E2F PATHWAY | E2F transcription factor network |
| 0.4 | 1.7 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 1.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.7 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.0 | 0.1 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.5 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.4 | 2.1 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.4 | 1.8 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 1.6 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.3 | 1.3 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.4 | 1.2 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.2 | 1.2 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.1 | 1.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.6 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.6 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |