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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G64060
Z-value: 0.56
Transcription factors associated with AT5G64060
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G64060
|
AT5G64060 | NAC domain containing protein 103 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC103 | arTal_v1_Chr5_-_25635789_25635789 | -0.14 | 4.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 1.10 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 1.01 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr5_+_20130752_20130752 Show fit | 0.99 |
AT5G49600.1
|
plant/protein (Protein of unknown function, DUF538) |
|
| arTal_v1_Chr1_+_27538190_27538190 Show fit | 0.97 |
AT1G73220.1
|
organic cation/carnitine transporter1 |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 0.96 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr1_+_21652988_21652988 Show fit | 0.88 |
AT1G58340.1
|
MATE efflux family protein |
|
| arTal_v1_Chr2_-_19291632_19291632 Show fit | 0.88 |
AT2G46950.2
AT2G46950.1 |
cytochrome P450, family 709, subfamily B, polypeptide 2 |
|
| arTal_v1_Chr1_+_10537648_10537648 Show fit | 0.86 |
AT1G30040.2
|
gibberellin 2-oxidase |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 0.84 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr1_+_10537457_10537457 Show fit | 0.83 |
AT1G30040.1
|
gibberellin 2-oxidase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G64060
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.6 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 2.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 1.9 | GO:0006623 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.2 | 1.7 | GO:0045487 | diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487) |
| 0.0 | 1.5 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.1 | 1.4 | GO:0046834 | lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854) |
| 0.0 | 1.3 | GO:0071230 | cellular response to amino acid stimulus(GO:0071230) |
| 0.0 | 1.3 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.4 | 1.2 | GO:0007098 | centrosome cycle(GO:0007098) centriole replication(GO:0007099) centrosome organization(GO:0051297) centrosome duplication(GO:0051298) centriole assembly(GO:0098534) |
| 0.1 | 1.1 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 1.5 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 1.3 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.4 | 1.2 | GO:0005814 | centrosome(GO:0005813) centriole(GO:0005814) |
| 0.0 | 1.1 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 1.0 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.0 | 0.9 | GO:0016592 | mediator complex(GO:0016592) |
| 0.2 | 0.7 | GO:0034702 | ion channel complex(GO:0034702) cation channel complex(GO:0034703) |
| 0.1 | 0.6 | GO:0090395 | plant cell papilla(GO:0090395) |
| 0.0 | 0.6 | GO:0031012 | extracellular matrix(GO:0031012) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.9 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.3 | 1.8 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.2 | 1.7 | GO:0045543 | gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634) |
| 0.1 | 1.6 | GO:0047893 | flavonol 3-O-glucosyltransferase activity(GO:0047893) |
| 0.0 | 1.6 | GO:0080044 | quercetin 7-O-glucosyltransferase activity(GO:0080044) |
| 0.1 | 1.4 | GO:0070290 | phospholipase D activity(GO:0004630) N-acylphosphatidylethanolamine-specific phospholipase D activity(GO:0070290) |
| 0.0 | 1.4 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.1 | 1.3 | GO:0008066 | glutamate receptor activity(GO:0008066) |
| 0.0 | 1.3 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.1 | 1.2 | GO:0047372 | acylglycerol lipase activity(GO:0047372) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.4 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.3 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.2 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.0 | 0.1 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.0 | 0.1 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.0 | 0.1 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.0 | 0.1 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.0 | 0.0 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.1 | 0.4 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.1 | 0.3 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.1 | 0.2 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.2 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.1 | 0.2 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
| 0.0 | 0.2 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.0 | 0.2 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.0 | 0.2 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.0 | 0.0 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |