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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G63260
Z-value: 1.12
Transcription factors associated with AT5G63260
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G63260
|
AT5G63260 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G63260 | arTal_v1_Chr5_+_25361713_25361747 | -0.49 | 7.8e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 3.77 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 2.90 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 2.84 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 2.59 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 2.55 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 2.40 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 2.37 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 2.36 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 2.33 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 2.18 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G63260
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 13.8 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.2 | 12.8 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.7 | 12.7 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 9.1 | GO:0042335 | cuticle development(GO:0042335) |
| 0.1 | 7.1 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 4.4 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.1 | 4.3 | GO:0045454 | cell redox homeostasis(GO:0045454) |
| 0.6 | 4.2 | GO:0010623 | programmed cell death involved in cell development(GO:0010623) |
| 0.1 | 3.9 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.2 | 3.8 | GO:0046501 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 61.5 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 28.2 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.1 | 22.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 22.1 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 20.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 13.3 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 10.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 6.2 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 0.1 | 5.2 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 4.7 | GO:0005871 | kinesin complex(GO:0005871) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 13.7 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.4 | 9.0 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.1 | 7.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 7.1 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.3 | 7.0 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 6.8 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.1 | 5.9 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 5.7 | GO:0008134 | transcription factor binding(GO:0008134) |
| 0.3 | 5.5 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.5 | 4.7 | GO:0051920 | thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.7 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.2 | 1.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 1.2 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.2 | 0.9 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 0.6 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.6 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.2 | 0.5 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.5 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.1 | 0.3 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.8 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.3 | 1.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.3 | 1.1 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 0.8 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.2 | 0.6 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.1 | 0.6 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.2 | 0.5 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.1 | 0.5 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.1 | 0.5 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.1 | 0.5 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |