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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G62380
Z-value: 1.46
Transcription factors associated with AT5G62380
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G62380
|
AT5G62380 | NAC-domain protein 101 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC101 | arTal_v1_Chr5_+_25050679_25050679 | 0.61 | 6.4e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 9.08 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 8.78 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 8.16 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 7.70 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 7.68 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 7.44 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 7.13 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 6.95 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr5_-_15382071_15382071 Show fit | 6.92 |
AT5G38420.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 6.90 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G62380
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 86.6 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.9 | 35.2 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.5 | 31.7 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.9 | 26.0 | GO:0042335 | cuticle development(GO:0042335) |
| 0.3 | 24.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.4 | 24.0 | GO:0045491 | xylan metabolic process(GO:0045491) |
| 0.4 | 21.0 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.4 | 20.6 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 2.0 | 19.5 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
| 3.0 | 18.1 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 174.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.3 | 95.9 | GO:0031976 | plastid thylakoid(GO:0031976) |
| 0.1 | 54.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 45.1 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 43.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.3 | 40.1 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.8 | 38.0 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 3.3 | 30.0 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 1.2 | 29.1 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 1.4 | 11.4 | GO:0009538 | photosystem I reaction center(GO:0009538) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 39.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 6.5 | 39.0 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.5 | 35.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 22.9 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 1.0 | 22.4 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 1.0 | 19.4 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 0.3 | 18.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 2.2 | 17.4 | GO:0019137 | thioglucosidase activity(GO:0019137) |
| 0.2 | 14.5 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 1.6 | 14.1 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.7 | 6.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.8 | 5.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.7 | 4.1 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.6 | 3.9 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.6 | 2.5 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.5 | 1.6 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.4 | 1.6 | PID TCR PATHWAY | TCR signaling in naïve CD4+ T cells |
| 0.2 | 1.4 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.3 | 1.3 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.1 | 1.3 | PID FANCONI PATHWAY | Fanconi anemia pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.0 | 12.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.4 | 6.5 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.3 | 5.1 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.7 | 3.6 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.8 | 2.5 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.3 | 2.3 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
| 0.7 | 2.2 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.6 | 2.2 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.3 | 1.9 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.5 | 1.6 | REACTOME GAB1 SIGNALOSOME | Genes involved in GAB1 signalosome |