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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G62020
Z-value: 0.72
Transcription factors associated with AT5G62020
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G62020
|
AT5G62020 | heat shock transcription factor B2A |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HSFB2A | arTal_v1_Chr5_+_24915807_24915807 | -0.52 | 4.8e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_5237970_5238178 Show fit | 1.36 |
AT5G16030.1
AT5G16030.4 AT5G16030.2 AT5G16030.3 |
mental retardation GTPase activating protein |
|
| arTal_v1_Chr5_+_5238502_5238502 Show fit | 1.28 |
AT5G16030.5
|
mental retardation GTPase activating protein |
|
| arTal_v1_Chr3_+_251868_251868 Show fit | 1.27 |
AT3G01680.1
|
sieve element occlusion amino-terminus protein |
|
| arTal_v1_Chr5_+_2803833_2803957 Show fit | 1.12 |
AT5G08640.1
AT5G08640.2 |
flavonol synthase 1 |
|
| arTal_v1_Chr5_+_152446_152446 Show fit | 1.06 |
AT5G01370.1
|
ALC-interacting protein 1 |
|
| arTal_v1_Chr4_+_14192569_14192569 Show fit | 1.03 |
AT4G28720.1
|
Flavin-binding monooxygenase family protein |
|
| arTal_v1_Chr1_-_28603932_28603932 Show fit | 1.02 |
AT1G76240.1
|
DUF241 domain protein (DUF241) |
|
| arTal_v1_Chr3_+_18049571_18049571 Show fit | 1.02 |
AT3G48730.1
|
glutamate-1-semialdehyde 2,1-aminomutase 2 |
|
| arTal_v1_Chr3_-_17337733_17337733 Show fit | 1.02 |
AT3G47070.1
|
thylakoid soluble phosphoprotein |
|
| arTal_v1_Chr1_-_15607966_15607966 Show fit | 0.93 |
AT1G41830.1
|
SKU5-similar 6 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G62020
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.8 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.1 | 1.6 | GO:0046501 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
| 0.0 | 1.6 | GO:0010017 | red or far-red light signaling pathway(GO:0010017) |
| 0.3 | 1.3 | GO:0009806 | lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807) |
| 0.1 | 1.3 | GO:0010088 | phloem development(GO:0010088) |
| 0.2 | 1.2 | GO:0048533 | sporocyte differentiation(GO:0048533) |
| 0.0 | 1.2 | GO:0010268 | brassinosteroid homeostasis(GO:0010268) |
| 0.1 | 1.1 | GO:0016045 | detection of bacterium(GO:0016045) |
| 0.1 | 1.1 | GO:0010047 | fruit dehiscence(GO:0010047) |
| 0.1 | 1.1 | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0019288) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.2 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 1.0 | GO:0005875 | microtubule associated complex(GO:0005875) |
| 0.1 | 0.9 | GO:0009360 | DNA polymerase III complex(GO:0009360) |
| 0.0 | 0.9 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.1 | 0.7 | GO:0030892 | nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991) |
| 0.1 | 0.7 | GO:0031209 | SCAR complex(GO:0031209) |
| 0.0 | 0.7 | GO:0019897 | extrinsic component of plasma membrane(GO:0019897) |
| 0.0 | 0.6 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.1 | 0.4 | GO:0048476 | Holliday junction resolvase complex(GO:0048476) |
| 0.0 | 0.4 | GO:0005677 | chromatin silencing complex(GO:0005677) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.8 | GO:0004350 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.0 | 1.5 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.0 | 1.5 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.1 | 1.3 | GO:0016161 | beta-amylase activity(GO:0016161) |
| 0.0 | 1.3 | GO:0051536 | iron-sulfur cluster binding(GO:0051536) metal cluster binding(GO:0051540) |
| 0.0 | 1.3 | GO:0008483 | transaminase activity(GO:0008483) |
| 0.1 | 1.2 | GO:0103075 | indole-3-pyruvate monooxygenase activity(GO:0103075) |
| 0.3 | 1.0 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
| 0.2 | 1.0 | GO:0045431 | flavonol synthase activity(GO:0045431) |
| 0.0 | 1.0 | GO:0030247 | pattern binding(GO:0001871) polysaccharide binding(GO:0030247) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 0.5 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
| 0.1 | 0.4 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.0 | 0.2 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |