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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G62000
Z-value: 2.42
Transcription factors associated with AT5G62000
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G62000
|
AT5G62000 | auxin response factor 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ARF2 | arTal_v1_Chr5_+_24910191_24910358 | -0.67 | 1.1e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 8.40 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 7.82 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 7.62 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 7.44 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 7.23 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 6.99 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 6.91 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 6.85 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 6.85 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 6.69 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G62000
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 48.4 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.7 | 44.3 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.8 | 32.3 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 1.7 | 31.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 1.6 | 28.1 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.9 | 27.2 | GO:0042335 | cuticle development(GO:0042335) |
| 0.5 | 25.8 | GO:0019684 | photosynthesis, light reaction(GO:0019684) |
| 0.4 | 24.9 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.3 | 23.4 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.2 | 21.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 195.2 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 122.5 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.4 | 114.0 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.3 | 46.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 1.3 | 44.3 | GO:0009523 | photosystem II(GO:0009523) |
| 0.2 | 38.7 | GO:0044434 | chloroplast part(GO:0044434) |
| 1.2 | 34.3 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.6 | 34.3 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.2 | 34.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.2 | 30.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 37.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.3 | 31.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 1.3 | 29.1 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.4 | 26.4 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.7 | 23.0 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 1.6 | 22.9 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.9 | 22.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 21.9 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.3 | 19.6 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.3 | 17.0 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 8.0 | PID ATR PATHWAY | ATR signaling pathway |
| 2.0 | 7.9 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 1.0 | 7.0 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.4 | 4.1 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 1.0 | 2.9 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.3 | 1.9 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.4 | 1.7 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.3 | 1.5 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.3 | 1.3 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.2 | 1.2 | PID FANCONI PATHWAY | Fanconi anemia pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.2 | 13.0 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.7 | 9.1 | REACTOME ORC1 REMOVAL FROM CHROMATIN | Genes involved in Orc1 removal from chromatin |
| 0.2 | 5.7 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 1.2 | 4.7 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 1.1 | 3.2 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.9 | 2.8 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.6 | 2.5 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.5 | 2.3 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.2 | 2.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.6 | 1.9 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |