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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G61850
Z-value: 2.21
Transcription factors associated with AT5G61850
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G61850
|
AT5G61850 | floral meristem identity control protein LEAFY (LFY) |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LFY | arTal_v1_Chr5_+_24844248_24844295 | -0.18 | 3.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_17005510_17005510 Show fit | 5.23 |
AT5G42530.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_3402389_3402389 Show fit | 5.20 |
AT5G10760.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr3_+_11033665_11033665 Show fit | 5.04 |
AT3G29035.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr2_-_18077517_18077517 Show fit | 4.48 |
AT2G43570.1
|
chitinase |
|
| arTal_v1_Chr4_+_8294446_8294452 Show fit | 4.29 |
AT4G14400.2
AT4G14400.3 |
ankyrin repeat family protein |
|
| arTal_v1_Chr3_-_9575215_9575215 Show fit | 4.28 |
AT3G26170.1
|
cytochrome P450, family 71, subfamily B, polypeptide 19 |
|
| arTal_v1_Chr4_+_8294165_8294165 Show fit | 3.78 |
AT4G14400.1
|
ankyrin repeat family protein |
|
| arTal_v1_Chr1_+_8540838_8540838 Show fit | 3.66 |
AT1G24145.1
|
transmembrane protein |
|
| arTal_v1_Chr3_-_9595283_9595283 Show fit | 3.57 |
AT3G26210.1
|
cytochrome P450, family 71, subfamily B, polypeptide 23 |
|
| arTal_v1_Chr4_+_10481619_10481619 Show fit | 3.45 |
AT4G19170.1
|
nine-cis-epoxycarotenoid dioxygenase 4 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G61850
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 9.4 | GO:1902290 | positive regulation of defense response to oomycetes(GO:1902290) |
| 0.1 | 9.3 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 0.1 | 9.2 | GO:0009615 | response to virus(GO:0009615) |
| 0.1 | 9.2 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.3 | 9.0 | GO:0071483 | cellular response to blue light(GO:0071483) |
| 0.2 | 7.9 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 1.4 | 7.0 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.1 | 6.2 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.2 | 5.9 | GO:0007166 | cell surface receptor signaling pathway(GO:0007166) |
| 0.2 | 5.1 | GO:0010072 | primary shoot apical meristem specification(GO:0010072) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 74.7 | GO:0009507 | chloroplast(GO:0009507) |
| 0.2 | 11.0 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
| 0.0 | 6.6 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 5.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 5.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 4.5 | GO:0005654 | nucleoplasm(GO:0005654) |
| 0.0 | 3.6 | GO:0005938 | cell cortex(GO:0005938) cytoplasmic region(GO:0099568) |
| 0.2 | 3.2 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 3.2 | GO:0098590 | plasma membrane region(GO:0098590) |
| 0.2 | 3.0 | GO:0005801 | cis-Golgi network(GO:0005801) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 49.2 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.1 | 17.7 | GO:0005506 | iron ion binding(GO:0005506) |
| 0.0 | 16.8 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 7.4 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 7.1 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 6.7 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 6.4 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.1 | 6.1 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.8 | 5.9 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.2 | 5.9 | GO:0016597 | amino acid binding(GO:0016597) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 3.7 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.5 | 3.2 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.3 | 1.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 1.6 | PID E2F PATHWAY | E2F transcription factor network |
| 0.2 | 0.9 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.3 | 0.8 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.1 | 0.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.2 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.1 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.0 | 0.1 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 3.7 | REACTOME SPRY REGULATION OF FGF SIGNALING | Genes involved in Spry regulation of FGF signaling |
| 0.3 | 2.8 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.3 | 2.3 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.0 | 1.6 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.4 | 1.5 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 1.4 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 0.4 | 1.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.2 | 1.1 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.3 | 0.9 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.0 | 0.9 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |