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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G61380
Z-value: 0.52
Transcription factors associated with AT5G61380
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G61380
|
AT5G61380 | CCT motif -containing response regulator protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TOC1 | arTal_v1_Chr5_+_24674963_24674963 | 0.20 | 3.1e-01 | Click! |
Activity profile of AT5G61380 motif
Sorted Z-values of AT5G61380 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| Chr1_-_467873 | 1.52 |
AT1G02340.2
AT1G02340.1 |
HFR1
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Chr1_-_37757 | 0.91 |
AT1G01060.3
AT1G01060.2 AT1G01060.4 AT1G01060.1 AT1G01060.6 AT1G01060.7 AT1G01060.5 |
LHY
|
Homeodomain-like superfamily protein |
| Chr4_+_9449114 | 0.89 |
AT4G16780.1
|
HB-2
|
homeobox protein 2 |
| Chr5_+_206432 | 0.88 |
AT5G01520.2
AT5G01520.1 |
AIRP2
|
RING/U-box superfamily protein |
| Chr1_-_37230 | 0.75 |
AT1G01060.8
|
LHY
|
Homeodomain-like superfamily protein |
| Chr1_+_11827359 | 0.73 |
AT1G32700.1
AT1G32700.2 |
AT1G32700
|
PLATZ transcription factor family protein |
| Chr1_-_156011 | 0.73 |
AT1G01420.1
|
UGT72B3
|
UDP-glucosyl transferase 72B3 |
| Chr1_-_156178 | 0.73 |
AT1G01420.2
|
UGT72B3
|
UDP-glucosyl transferase 72B3 |
| Chr3_+_151725 | 0.60 |
AT3G01400.1
|
AT3G01400
|
ARM repeat superfamily protein |
| Chr3_+_22804998 | 0.57 |
AT3G61630.1
|
CRF6
|
cytokinin response factor 6 |
| Chr1_-_28318362 | 0.54 |
AT1G75450.1
AT1G75450.2 |
CKX5
|
cytokinin oxidase 5 |
| Chr4_-_9598282 | 0.42 |
AT4G17070.1
|
AT4G17070
|
peptidyl-prolyl cis-trans isomerase |
| Chr2_+_19246681 | 0.42 |
AT2G46830.3
|
CCA1
|
circadian clock associated 1 |
| Chr1_+_2152798 | 0.42 |
AT1G07010.1
AT1G07010.2 AT1G07010.3 |
SLP1
|
Calcineurin-like metallo-phosphoesterase superfamily protein |
| Chr2_+_19245591 | 0.41 |
AT2G46830.1
AT2G46830.2 |
CCA1
|
circadian clock associated 1 |
| Chr1_+_26612359 | 0.40 |
AT1G70580.2
AT1G70580.1 |
AOAT2
|
alanine-2-oxoglutarate aminotransferase 2 |
| Chr1_+_26612999 | 0.39 |
AT1G70580.3
|
AOAT2
|
alanine-2-oxoglutarate aminotransferase 2 |
| Chr4_-_9779939 | 0.39 |
AT4G17550.1
|
G3Pp4
|
Major facilitator superfamily protein |
| Chr1_+_26612768 | 0.39 |
AT1G70580.4
|
AOAT2
|
alanine-2-oxoglutarate aminotransferase 2 |
| Chr5_+_579744 | 0.36 |
AT5G02580.1
AT5G02580.3 AT5G02580.2 |
AT5G02580
|
argininosuccinate lyase |
| Chr5_-_19218007 | 0.32 |
AT5G47370.1
|
HAT2
|
Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
| Chr5_+_4394283 | 0.31 |
AT5G13640.3
|
PDAT
|
phospholipid:diacylglycerol acyltransferase |
| Chr5_+_25113948 | 0.29 |
AT5G62570.4
AT5G62570.1 AT5G62570.3 |
AT5G62570
|
Calmodulin binding protein-like protein |
| Chr2_+_13381767 | 0.29 |
AT2G31380.1
|
STH
|
salt tolerance homologue |
| Chr4_-_6840036 | 0.28 |
AT4G11220.1
|
BTI2
|
VIRB2-interacting protein 2 |
| Chr4_+_15583332 | 0.27 |
AT4G32280.1
AT4G32280.2 AT4G32280.3 |
IAA29
|
indole-3-acetic acid inducible 29 |
| Chr3_-_21830207 | 0.27 |
AT3G59060.3
|
PIL6
|
phytochrome interacting factor 3-like 6 |
| Chr5_+_4392937 | 0.27 |
AT5G13640.1
AT5G13640.2 |
PDAT
|
phospholipid:diacylglycerol acyltransferase |
| Chr3_-_21830507 | 0.26 |
AT3G59060.1
AT3G59060.4 |
PIL6
|
phytochrome interacting factor 3-like 6 |
| Chr5_-_25920254 | 0.26 |
AT5G64840.1
|
ABCF5
|
general control non-repressible 5 |
| Chr3_-_21830837 | 0.25 |
AT3G59060.2
|
PIL6
|
phytochrome interacting factor 3-like 6 |
| Chr1_-_5955037 | 0.23 |
AT1G17370.2
AT1G17370.1 |
UBP1B
|
oligouridylate binding protein 1B |
| Chr3_+_22733243 | 0.22 |
AT3G61430.1
AT3G61430.2 |
PIP1A
|
plasma membrane intrinsic protein 1A |
| Chr5_+_25114421 | 0.22 |
AT5G62570.2
|
AT5G62570
|
Calmodulin binding protein-like protein |
| Chr4_+_9601348 | 0.20 |
AT4G17080.1
|
AT4G17080
|
Histone H3 K4-specific methyltransferase SET7/9 family protein |
| Chr4_-_18077369 | 0.18 |
AT4G38700.1
|
AT4G38700
|
Disease resistance-responsive (dirigent-like protein) family protein |
| Chr3_-_21471694 | 0.18 |
AT3G57990.1
|
AT3G57990
|
hypothetical protein |
| Chr2_-_19297529 | 0.17 |
AT2G46970.2
AT2G46970.3 |
PIL1
|
phytochrome interacting factor 3-like 1 |
| Chr1_-_27595142 | 0.17 |
AT1G73390.4
AT1G73390.3 AT1G73390.5 AT1G73390.2 |
AT1G73390
|
Endosomal targeting BRO1-like domain-containing protein |
| Chr5_-_24953232 | 0.15 |
AT5G62130.2
AT5G62130.3 AT5G62130.1 AT5G62130.4 |
AT5G62130
|
Per1-like family protein |
| Chr5_+_20192159 | 0.14 |
AT5G49700.1
|
AT5G49700
|
Putative AT-hook DNA-binding family protein |
| Chr1_-_27594510 | 0.12 |
AT1G73390.1
AT1G73390.7 |
AT1G73390
|
Endosomal targeting BRO1-like domain-containing protein |
| Chr5_-_265633 | 0.11 |
AT5G01710.1
|
AT5G01710
|
methyltransferase |
| Chr4_-_16950620 | 0.09 |
AT4G35780.1
|
STY17
|
ACT-like protein tyrosine kinase family protein |
| Chr3_+_9867652 | 0.08 |
AT3G26810.1
|
AFB2
|
auxin signaling F-box 2 |
| Chr5_+_437365 | 0.08 |
AT5G02200.2
AT5G02200.1 |
FHL
|
far-red-elongated hypocotyl1-like protein |
| Chr4_+_14192569 | 0.06 |
AT4G28720.1
|
YUC8
|
Flavin-binding monooxygenase family protein |
| Chr4_-_11956918 | 0.06 |
AT4G22756.1
|
SMO1-2
|
sterol C4-methyl oxidase 1-2 |
| Chr4_+_2618372 | 0.05 |
AT4G05100.1
|
MYB74
|
myb domain protein 74 |
| Chr2_+_385171 | 0.04 |
AT2G01850.1
|
EXGT-A3
|
endoxyloglucan transferase A3 |
| Chr2_-_19297858 | 0.03 |
AT2G46970.1
|
PIL1
|
phytochrome interacting factor 3-like 1 |
| Chr1_-_27595752 | 0.01 |
AT1G73390.6
|
AT1G73390
|
Endosomal targeting BRO1-like domain-containing protein |
| Chr5_+_18835605 | 0.01 |
AT5G46450.2
AT5G46450.1 AT5G46450.3 |
AT5G46450
|
Disease resistance protein (TIR-NBS-LRR class) family |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G61380
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.5 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
| 0.1 | 1.2 | GO:0009080 | alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) L-alanine metabolic process(GO:0042851) L-alanine catabolic process(GO:0042853) |
| 0.1 | 0.9 | GO:0080190 | lateral growth(GO:0080190) |
| 0.1 | 0.5 | GO:0042447 | cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447) |
| 0.1 | 2.3 | GO:0009585 | phototransduction(GO:0007602) red, far-red light phototransduction(GO:0009585) |
| 0.1 | 0.3 | GO:0071786 | endoplasmic reticulum tubular network organization(GO:0071786) |
| 0.0 | 0.4 | GO:0072506 | phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506) |
| 0.0 | 0.6 | GO:0019432 | triglyceride biosynthetic process(GO:0019432) |
| 0.0 | 0.3 | GO:0010100 | negative regulation of photomorphogenesis(GO:0010100) |
| 0.0 | 0.1 | GO:0051457 | maintenance of protein location in nucleus(GO:0051457) |
| 0.0 | 0.9 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
| 0.0 | 0.4 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | GO:0098827 | endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | GO:0047958 | glycine:2-oxoglutarate aminotransferase activity(GO:0047958) |
| 0.2 | 0.6 | GO:0046027 | phospholipid:diacylglycerol acyltransferase activity(GO:0046027) |
| 0.2 | 1.1 | GO:0019904 | protein domain specific binding(GO:0019904) |
| 0.1 | 0.5 | GO:0019139 | cytokinin dehydrogenase activity(GO:0019139) |
| 0.0 | 1.5 | GO:0080043 | quercetin 3-O-glucosyltransferase activity(GO:0080043) |
| 0.0 | 0.2 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.0 | 0.1 | GO:0010011 | auxin binding(GO:0010011) |