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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G60850
Z-value: 0.69
Transcription factors associated with AT5G60850
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G60850
|
AT5G60850 | OBF binding protein 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| OBP4 | arTal_v1_Chr5_+_24480291_24480291 | -0.47 | 1.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 2.34 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 1.84 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 1.83 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 1.75 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 1.55 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 1.54 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 1.54 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 1.53 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 1.50 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 1.47 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G60850
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.1 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.1 | 9.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 9.3 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.3 | 5.3 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 4.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 3.9 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.1 | 3.9 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 3.2 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.1 | 3.1 | GO:0009690 | cytokinin metabolic process(GO:0009690) |
| 0.1 | 2.6 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 41.3 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 37.9 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 21.6 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 19.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 5.8 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 5.8 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.0 | 5.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 5.0 | GO:0048046 | apoplast(GO:0048046) |
| 0.2 | 3.1 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.0 | 3.1 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 9.3 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 5.8 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.2 | 5.7 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.3 | 5.5 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.0 | 4.7 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.1 | 4.0 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 4.0 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 3.8 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 3.7 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 3.2 | GO:0016168 | chlorophyll binding(GO:0016168) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.8 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.2 | 0.7 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.7 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.5 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.0 | 0.3 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.2 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.2 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
| 0.1 | 0.2 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 0.9 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.3 | 0.8 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.2 | 0.8 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.1 | 0.7 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.2 | 0.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.6 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.4 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.0 | 0.3 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.3 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |