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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G58850
Z-value: 1.18
Transcription factors associated with AT5G58850
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G58850
|
AT5G58850 | myb domain protein 119 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB119 | arTal_v1_Chr5_+_23763945_23763945 | 0.60 | 8.2e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_3752780_3752780 Show fit | 3.27 |
AT1G11190.1
|
bifunctional nuclease i |
|
| arTal_v1_Chr3_-_19643276_19643282 Show fit | 3.26 |
AT3G52970.1
AT3G52970.2 |
cytochrome P450, family 76, subfamily G, polypeptide 1 |
|
| arTal_v1_Chr2_-_19291632_19291632 Show fit | 2.92 |
AT2G46950.2
AT2G46950.1 |
cytochrome P450, family 709, subfamily B, polypeptide 2 |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 2.64 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr1_+_21652988_21652988 Show fit | 2.56 |
AT1G58340.1
|
MATE efflux family protein |
|
| arTal_v1_Chr2_+_13581534_13581534 Show fit | 2.53 |
AT2G31945.1
|
transmembrane protein |
|
| arTal_v1_Chr2_-_8447355_8447355 Show fit | 2.49 |
AT2G19500.1
|
cytokinin oxidase 2 |
|
| arTal_v1_Chr3_-_19564195_19564195 Show fit | 2.48 |
AT3G52780.2
|
Purple acid phosphatases superfamily protein |
|
| arTal_v1_Chr3_-_19564350_19564350 Show fit | 2.47 |
AT3G52780.1
|
Purple acid phosphatases superfamily protein |
|
| arTal_v1_Chr5_-_17166032_17166032 Show fit | 2.37 |
AT5G42800.1
|
dihydroflavonol 4-reductase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G58850
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.3 | GO:0071456 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.2 | 7.2 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.1 | 6.7 | GO:0009624 | response to nematode(GO:0009624) |
| 0.3 | 5.2 | GO:0009697 | salicylic acid biosynthetic process(GO:0009697) |
| 0.1 | 5.2 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 5.0 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.3 | 4.8 | GO:0046341 | CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341) |
| 1.5 | 4.6 | GO:0016124 | tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124) |
| 0.7 | 4.2 | GO:0051176 | positive regulation of sulfur metabolic process(GO:0051176) |
| 0.6 | 4.1 | GO:0080187 | floral organ senescence(GO:0080187) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 5.8 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.3 | 5.2 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.1 | 4.2 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 3.4 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 3.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.4 | 2.6 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.3 | 2.6 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.1 | 2.6 | GO:0044463 | cell projection part(GO:0044463) |
| 0.2 | 2.5 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 8.5 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.1 | 7.6 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.8 | 5.6 | GO:0045549 | 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549) |
| 0.7 | 5.1 | GO:1990137 | plant seed peroxidase activity(GO:1990137) |
| 0.0 | 4.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 4.6 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.6 | 4.4 | GO:0004366 | glycerol-3-phosphate O-acyltransferase activity(GO:0004366) |
| 0.5 | 4.2 | GO:0003997 | acyl-CoA oxidase activity(GO:0003997) |
| 0.1 | 4.0 | GO:0003993 | acid phosphatase activity(GO:0003993) |
| 1.3 | 3.9 | GO:0008909 | isochorismate synthase activity(GO:0008909) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.7 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.2 | 1.3 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.2 | 0.7 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 0.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.3 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.0 | 0.2 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.0 | 0.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.0 | 0.1 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.0 | 0.1 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.4 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.4 | 2.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.2 | 1.5 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.4 | 1.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.2 | 0.7 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.2 | 0.6 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.2 | 0.5 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.4 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.1 | 0.3 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |