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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT5G56840

Z-value: 1.63

Transcription factors associated with AT5G56840

Gene Symbol Gene ID Gene Info
AT5G56840 myb-like transcription factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT5G56840arTal_v1_Chr5_+_22980638_22980638-0.422.6e-02Click!

Activity profile of AT5G56840 motif

Sorted Z-values of AT5G56840 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_+_9072708 3.25 AT5G25980.2
AT5G25980.1
AT5G25980.3
glucoside glucohydrolase 2
Chr1_-_4090857 2.99 AT1G12090.1
extensin-like protein
Chr2_-_4312103 2.98 AT2G10940.2
AT2G10940.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_+_8863224 2.95 AT5G25460.1
transmembrane protein, putative (Protein of unknown function, DUF642)
Chr4_+_13391293 2.88 AT4G26530.2
AT4G26530.1
Aldolase superfamily protein
Chr4_+_13390754 2.80 AT4G26530.3
Aldolase superfamily protein
Chr1_-_29635931 2.79 AT1G78820.1
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr5_+_625254 2.74 AT5G02760.1
Protein phosphatase 2C family protein
Chr3_+_5556710 2.51 AT3G16370.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_-_15378416 2.49 AT5G38410.3
AT5G38410.2
Ribulose bisphosphate carboxylase (small chain) family protein
Chr5_-_15378642 2.48 AT5G38410.1
Ribulose bisphosphate carboxylase (small chain) family protein
Chr1_+_6409655 2.46 AT1G18620.3
AT1G18620.1
AT1G18620.4
LONGIFOLIA protein
Chr5_-_15382071 2.43 AT5G38420.1
Ribulose bisphosphate carboxylase (small chain) family protein
Chr3_+_23266227 2.43 AT3G62950.1
Thioredoxin superfamily protein
Chr5_-_8707885 2.33 AT5G25190.1
Integrase-type DNA-binding superfamily protein
Chr5_+_4757856 2.31 AT5G14740.3
AT5G14740.6
AT5G14740.1
AT5G14740.7
AT5G14740.8
AT5G14740.2
AT5G14740.4
AT5G14740.5
carbonic anhydrase 2
Chr3_-_7557969 2.27 AT3G21460.1
Glutaredoxin family protein
Chr2_-_1800472 2.18 AT2G05070.1
photosystem II light harvesting complex protein 2.2
Chr2_+_16476198 2.17 AT2G39470.1
AT2G39470.2
AT2G39470.3
PsbP-like protein 2
Chr5_+_17712203 2.16 AT5G44020.1
HAD superfamily, subfamily IIIB acid phosphatase
Chr1_+_6410947 2.14 AT1G18620.5
LONGIFOLIA protein
Chr2_+_2763449 2.14 AT2G06850.1
AT2G06850.2
xyloglucan endotransglucosylase/hydrolase 4
Chr5_+_4758921 2.11 AT5G14740.9
carbonic anhydrase 2
Chr1_+_6410033 2.10 AT1G18620.2
LONGIFOLIA protein
Chr4_+_18291218 2.06 AT4G39330.1
AT4G39330.2
cinnamyl alcohol dehydrogenase 9
Chr4_+_17243583 2.06 AT4G36540.2
AT4G36540.1
BR enhanced expression 2
Chr3_+_17228642 2.03 AT3G46780.1
plastid transcriptionally active 16
Chr2_+_16130290 2.02 AT2G38540.1
lipid transfer protein 1
Chr5_+_5237970 2.00 AT5G16030.1
AT5G16030.4
AT5G16030.2
AT5G16030.3
mental retardation GTPase activating protein
Chr1_-_7531108 2.00 AT1G21500.1
hypothetical protein
Chr5_+_21009347 1.98 AT5G51720.1
2 iron, 2 sulfur cluster binding protein
Chr1_+_3157501 1.96 AT1G09750.1
Eukaryotic aspartyl protease family protein
Chr3_-_4008018 1.95 AT3G12610.1
Leucine-rich repeat (LRR) family protein
Chr3_-_11013451 1.94 AT3G29030.1
expansin A5
Chr1_-_10475969 1.92 AT1G29920.1
chlorophyll A/B-binding protein 2
Chr4_-_12772438 1.90 AT4G24780.1
AT4G24780.2
Pectin lyase-like superfamily protein
Chr2_+_15059763 1.89 AT2G35860.1
FASCICLIN-like arabinogalactan protein 16 precursor
Chr5_-_18026077 1.88 AT5G44680.1
DNA glycosylase superfamily protein
Chr1_-_59215 1.88 AT1G01120.1
3-ketoacyl-CoA synthase 1
Chr1_+_10371675 1.87 AT1G29660.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_-_7954680 1.87 AT2G18300.1
AT2G18300.3
AT2G18300.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_-_8183570 1.83 AT1G23080.2
AT1G23080.3
AT1G23080.4
AT1G23080.1
Auxin efflux carrier family protein
Chr1_-_19052582 1.83 AT1G51400.1
Photosystem II 5 kD protein
Chr5_+_426226 1.82 AT5G02160.1
transmembrane protein
Chr5_+_5238502 1.82 AT5G16030.5
mental retardation GTPase activating protein
Chr1_+_20614573 1.81 AT1G55260.1
AT1G55260.2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_-_9620533 1.80 AT5G27290.2
AT5G27290.1
stress regulated protein
Chr1_-_23137254 1.80 AT1G62510.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_-_8916856 1.75 AT5G25610.1
BURP domain-containing protein
Chr1_-_28423520 1.74 AT1G75690.1
DnaJ/Hsp40 cysteine-rich domain superfamily protein
Chr5_+_6457026 1.73 AT5G19190.1
hypothetical protein
Chr1_-_4530222 1.72 AT1G13250.1
galacturonosyltransferase-like 3
Chr1_+_24229063 1.72 AT1G65230.1
transmembrane protein, putative (DUF2358)
Chr5_+_25523827 1.71 AT5G63780.1
RING/FYVE/PHD zinc finger superfamily protein
Chr3_-_7377186 1.70 AT3G21055.1
AT3G21055.2
photosystem II subunit T
Chr3_-_4744263 1.70 AT3G14240.1
Subtilase family protein
Chr1_+_11532199 1.69 AT1G32060.1
phosphoribulokinase
Chr3_+_251868 1.69 AT3G01680.1
sieve element occlusion amino-terminus protein
Chr4_+_13388290 1.68 AT4G26520.2
AT4G26520.1
AT4G26520.3
Aldolase superfamily protein
Chr1_+_26687202 1.68 AT1G70760.1
inorganic carbon transport protein-like protein
Chr5_+_25524045 1.68 AT5G63780.2
RING/FYVE/PHD zinc finger superfamily protein
Chr5_+_25016860 1.67 AT5G62280.1
DUF1442 family protein (DUF1442)
Chr4_-_7591259 1.66 AT4G12980.1
Auxin-responsive family protein
Chr2_+_9636346 1.66 AT2G22670.1
AT2G22670.4
AT2G22670.2
AT2G22670.5
AT2G22670.3
indoleacetic acid-induced protein 8
Chr3_-_8623214 1.65 AT3G23880.1
F-box and associated interaction domains-containing protein
Chr4_-_13398307 1.65 AT4G26540.1
Leucine-rich repeat receptor-like protein kinase family protein
Chr3_+_247192 1.64 AT3G01670.2
AT3G01670.1
sieve element occlusion protein
Chr5_+_19825078 1.64 AT5G48900.1
Pectin lyase-like superfamily protein
Chr5_+_22175461 1.63 AT5G54585.1
hypothetical protein
Chr1_-_7043392 1.61 AT1G20340.1
Cupredoxin superfamily protein
Chr1_-_10473502 1.60 AT1G29910.1
chlorophyll A/B binding protein 3
Chr3_+_2717557 1.60 AT3G08940.2
AT3G08940.1
light harvesting complex photosystem II
Chr4_+_15583332 1.59 AT4G32280.1
AT4G32280.2
AT4G32280.3
indole-3-acetic acid inducible 29
Chr4_+_6408007 1.59 AT4G10340.1
light harvesting complex of photosystem II 5
Chr5_-_20204595 1.58 AT5G49730.1
AT5G49730.2
ferric reduction oxidase 6
Chr3_-_2130451 1.57 AT3G06750.1
hydroxyproline-rich glycoprotein family protein
Chr4_-_16583075 1.56 AT4G34760.1
SAUR-like auxin-responsive protein family
Chr2_-_12173951 1.55 AT2G28470.2
AT2G28470.4
AT2G28470.1
AT2G28470.3
beta-galactosidase 8
Chr5_-_20712386 1.53 AT5G50915.4
AT5G50915.2
AT5G50915.1
AT5G50915.3
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_-_7316871 1.52 AT4G12320.1
cytochrome P450, family 706, subfamily A, polypeptide 6
Chr4_+_13388719 1.51 AT4G26520.4
Aldolase superfamily protein
Chr5_+_18634041 1.51 AT5G45950.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_+_8360996 1.50 AT4G14560.1
indole-3-acetic acid inducible
Chr5_+_15957368 1.49 AT5G39860.1
basic helix-loop-helix (bHLH) DNA-binding family protein
Chr2_+_19191247 1.49 AT2G46710.1
Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein
Chr3_+_17929581 1.48 AT3G48420.1
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_+_10477885 1.47 AT1G29930.1
chlorophyll A/B binding protein 1
Chr3_-_20257916 1.47 AT3G54720.1
Peptidase M28 family protein
Chr1_+_5058583 1.45 AT1G14700.4
AT1G14700.1
AT1G14700.3
AT1G14700.2
purple acid phosphatase 3
Chr1_+_3015237 1.44 AT1G09340.2
AT1G09340.1
chloroplast RNA binding protein
Chr4_+_620691 1.44 AT4G01460.1
AT4G01460.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_+_4899045 1.44 AT1G14345.1
NAD(P)-linked oxidoreductase superfamily protein
Chr4_-_14872267 1.43 AT4G30410.1
AT4G30410.2
sequence-specific DNA binding transcription factor
Chr2_+_8940833 1.43 AT2G20750.2
AT2G20750.1
expansin B1
Chr5_-_23406479 1.43 AT5G57780.1
transcription factor
Chr1_-_15607966 1.41 AT1G41830.1
SKU5-similar 6
Chr1_+_18802552 1.41 AT1G50732.1
transmembrane protein
Chr5_-_25629615 1.41 AT5G64040.2
AT5G64040.1
photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)
Chr4_+_8925571 1.40 AT4G15660.1
Thioredoxin superfamily protein
Chr3_-_19595834 1.39 AT3G52870.1
IQ calmodulin-binding motif family protein
Chr2_+_12589866 1.39 AT2G29310.3
AT2G29310.1
AT2G29310.2
AT2G29310.4
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_+_26572265 1.38 AT5G66580.1
hypothetical protein
Chr1_+_898480 1.38 AT1G03600.1
photosystem II family protein
Chr5_-_7026533 1.36 AT5G20740.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr5_+_26573964 1.36 AT5G66590.1
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr1_-_29518028 1.36 AT1G78450.1
SOUL heme-binding family protein
Chr3_-_23319636 1.35 AT3G63110.1
isopentenyltransferase 3
Chr4_+_15819489 1.34 AT4G32800.1
Integrase-type DNA-binding superfamily protein
Chr2_-_16603059 1.34 AT2G39800.2
AT2G39800.4
AT2G39800.3
delta1-pyrroline-5-carboxylate synthase 1
Chr4_+_7521257 1.34 AT4G12800.2
AT4G12800.1
photosystem I subunit l
Chr1_-_3396953 1.33 AT1G10360.1
glutathione S-transferase TAU 18
Chr4_+_16591179 1.33 AT4G34770.1
SAUR-like auxin-responsive protein family
Chr1_+_28829243 1.32 AT1G76800.1
Vacuolar iron transporter (VIT) family protein
Chr4_-_14724587 1.32 AT4G30110.2
heavy metal atpase 2
Chr5_+_1919080 1.32 AT5G06290.1
AT5G06290.2
2-cysteine peroxiredoxin B
Chr2_-_16603319 1.31 AT2G39800.1
delta1-pyrroline-5-carboxylate synthase 1
Chr4_-_14204061 1.31 AT4G28750.1
Photosystem I reaction centre subunit IV / PsaE protein
Chr2_+_10667898 1.30 AT2G25080.1
glutathione peroxidase 1
Chr4_-_8350030 1.30 AT4G14550.4
indole-3-acetic acid inducible 14
Chr5_-_7026753 1.30 AT5G20740.2
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_-_23165387 1.30 AT3G62630.1
stress response NST1-like protein (DUF1645)
Chr4_-_14725311 1.30 AT4G30110.1
heavy metal atpase 2
Chr3_-_22984566 1.30 AT3G62070.1
hypothetical protein
Chr2_+_6518749 1.30 AT2G15050.3
AT2G15050.1
AT2G15050.2
lipid transfer protein
Chr2_-_15790139 1.29 AT2G37640.1
Barwin-like endoglucanases superfamily protein
Chr4_+_5550404 1.29 AT4G08685.1
Pollen Ole e 1 allergen and extensin family protein
Chr2_-_13797237 1.28 AT2G32500.2
AT2G32500.1
Stress responsive alpha-beta barrel domain protein
Chr4_+_14677661 1.27 AT4G30020.2
AT4G30020.3
PA-domain containing subtilase family protein
Chr5_+_208866 1.27 AT5G01530.1
light harvesting complex photosystem II
Chr4_-_5932475 1.27 AT4G09350.1
Chaperone DnaJ-domain superfamily protein
Chr1_-_29638773 1.27 AT1G78830.1
Curculin-like (mannose-binding) lectin family protein
Chr5_+_7168106 1.27 AT5G21100.1
Plant L-ascorbate oxidase
Chr1_+_29413874 1.27 AT1G78170.1
E3 ubiquitin-protein ligase
Chr2_-_2588448 1.26 AT2G06520.1
photosystem II subunit X
Chr5_-_18588792 1.26 AT5G45820.1
CBL-interacting protein kinase 20
Chr5_+_17722402 1.26 AT5G44050.1
MATE efflux family protein
Chr3_-_5271984 1.25 AT3G15570.1
Phototropic-responsive NPH3 family protein
Chr4_+_13177356 1.25 AT4G25960.1
P-glycoprotein 2
Chr2_-_12277417 1.25 AT2G28630.2
3-ketoacyl-CoA synthase 12
Chr3_+_188321 1.25 AT3G01480.1
AT3G01480.2
cyclophilin 38
Chr4_+_10651744 1.25 AT4G19530.1
AT4G19530.2
disease resistance protein (TIR-NBS-LRR class) family
Chr2_-_15789605 1.25 AT2G37640.2
Barwin-like endoglucanases superfamily protein
Chr3_-_22322661 1.24 AT3G60390.1
homeobox-leucine zipper protein 3
Chr1_+_25401514 1.24 AT1G67750.1
Pectate lyase family protein
Chr1_+_1136078 1.24 AT1G04250.1
AUX/IAA transcriptional regulator family protein
Chr5_+_8365601 1.24 AT5G24490.1
30S ribosomal protein
Chr1_+_26964087 1.24 AT1G71695.1
Peroxidase superfamily protein
Chr1_+_26705420 1.23 AT1G70820.1
AT1G70820.2
phosphoglucomutase, putative / glucose phosphomutase
Chr1_+_20439383 1.23 AT1G54780.1
thylakoid lumen 18.3 kDa protein
Chr4_-_407142 1.23 AT4G00950.1
hypothetical protein (DUF688)
Chr3_+_10017321 1.22 AT3G27160.1
AT3G27160.2
Ribosomal protein S21 family protein
Chr5_-_6842946 1.22 AT5G20270.1
heptahelical transmembrane protein1
Chr4_-_8350263 1.22 AT4G14550.1
AT4G14550.2
AT4G14550.3
indole-3-acetic acid inducible 14
Chr4_+_11907355 1.22 AT4G22620.1
SAUR-like auxin-responsive protein family
Chr2_-_12277245 1.21 AT2G28630.1
3-ketoacyl-CoA synthase 12
Chr5_+_24922802 1.20 AT5G62040.1
PEBP (phosphatidylethanolamine-binding protein) family protein
Chr3_-_1832190 1.20 AT3G06070.1
hypothetical protein
Chr5_+_5078200 1.20 AT5G15600.1
AT5G15600.2
SPIRAL1-like4
Chr2_+_9259511 1.20 AT2G21650.1
Homeodomain-like superfamily protein
Chr2_+_17894796 1.20 AT2G43030.1
Ribosomal protein L3 family protein
Chr1_+_25374072 1.19 AT1G67700.1
AT1G67700.2
AT1G67700.5
AT1G67700.4
AT1G67700.3
multidrug resistance protein
Chr1_+_27991165 1.18 AT1G74470.1
Pyridine nucleotide-disulfide oxidoreductase family protein
Chr5_+_22808641 1.17 AT5G56320.2
AT5G56320.1
AT5G56320.3
expansin A14
Chr2_-_18630779 1.16 AT2G45190.1
Plant-specific transcription factor YABBY family protein
Chr5_+_18530834 1.16 AT5G45680.1
FK506-binding protein 13
Chr4_-_10188981 1.16 AT4G18440.1
L-Aspartase-like family protein
Chr2_-_12962162 1.16 AT2G30420.1
Homeodomain-like superfamily protein
Chr1_-_26515188 1.16 AT1G70370.2
AT1G70370.1
polygalacturonase 2
Chr2_+_1679307 1.15 AT2G04790.10
AT2G04790.6
AT2G04790.5
AT2G04790.7
AT2G04790.9
AT2G04790.8
AT2G04790.13
AT2G04790.12
AT2G04790.11
AT2G04790.14
AT2G04790.15
AT2G04790.16
AT2G04790.4
AT2G04790.3
AT2G04790.1
AT2G04790.2
PTB domain engulfment adapter
Chr3_+_21982989 1.15 AT3G59480.1
pfkB-like carbohydrate kinase family protein
Chr2_-_18630428 1.15 AT2G45190.2
Plant-specific transcription factor YABBY family protein
Chr2_-_1149261 1.14 AT2G03750.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_+_14678096 1.14 AT4G30020.4
PA-domain containing subtilase family protein
Chr2_+_15106940 1.14 AT2G35960.1
NDR1/HIN1-like 12
Chr1_-_28554810 1.14 AT1G76100.1
AT1G76100.2
plastocyanin 1
Chr2_+_12254888 1.14 AT2G28605.1
Photosystem II reaction center PsbP family protein
Chr4_-_12068538 1.14 AT4G23020.2
AT4G23020.1
hypothetical protein
Chr1_+_16871696 1.13 AT1G44575.2
Chlorophyll A-B binding family protein
Chr1_+_16871511 1.13 AT1G44575.3
Chlorophyll A-B binding family protein
Chr1_-_754262 1.13 AT1G03130.1
photosystem I subunit D-2
Chr1_+_16870221 1.12 AT1G44575.1
Chlorophyll A-B binding family protein
Chr1_-_464981 1.12 AT1G02335.1
germin-like protein subfamily 2 member 2 precursor
Chr5_-_4647461 1.12 AT5G14410.1
AT5G14410.2
hypothetical protein
Chr1_-_6072129 1.12 AT1G17650.1
AT1G17650.2
glyoxylate reductase 2
Chr4_-_2118617 1.12 AT4G04330.1
Chaperonin-like RbcX protein
Chr1_+_6942625 1.11 AT1G20020.1
AT1G20020.2
AT1G20020.3
ferredoxin-NADP[+]-oxidoreductase 2
Chr4_-_1230164 1.11 AT4G02770.1
photosystem I subunit D-1
Chr1_+_5722891 1.11 AT1G16720.2
AT1G16720.1
AT1G16720.3
high chlorophyll fluorescence phenotype 173
Chr1_-_29513100 1.11 AT1G78440.1
gibberellin 2-beta-dioxygenase
Chr5_-_3728726 1.11 AT5G11590.1
Integrase-type DNA-binding superfamily protein
Chr1_-_28245453 1.11 AT1G75250.1
AT1G75250.2
RAD-like 6
Chr2_-_17837618 1.11 AT2G42870.1
phy rapidly regulated 1
Chr1_-_26726652 1.11 AT1G70890.1
MLP-like protein 43
Chr1_+_11396402 1.10 AT1G31800.1
cytochrome P450, family 97, subfamily A, polypeptide 3
Chr2_+_11550705 1.10 AT2G27060.1
AT2G27060.2
AT2G27060.3
Leucine-rich repeat protein kinase family protein
Chr4_+_12870006 1.09 AT4G25050.2
AT4G25050.1
acyl carrier protein 4
Chr2_-_1861934 1.09 AT2G05160.3
AT2G05160.1
AT2G05160.2
CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
Chr3_-_2944457 1.09 AT3G09580.1
FAD/NAD(P)-binding oxidoreductase family protein
Chr4_-_2352025 1.09 AT4G04640.1
ATPase, F1 complex, gamma subunit protein
Chr1_-_1455322 1.09 AT1G05065.1
CLAVATA3/ESR-RELATED 20

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G56840

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 8.7 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.7 2.1 GO:0048872 tissue homeostasis(GO:0001894) homeostasis of number of meristem cells(GO:0007639) homeostasis of number of cells(GO:0048872) homeostasis of number of cells within a tissue(GO:0048873)
0.6 13.4 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.5 1.6 GO:0010541 acropetal auxin transport(GO:0010541)
0.5 8.9 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.5 0.5 GO:0009106 lipoate metabolic process(GO:0009106)
0.5 2.3 GO:0010450 inflorescence meristem growth(GO:0010450)
0.5 2.3 GO:0006106 fumarate metabolic process(GO:0006106)
0.5 1.4 GO:1900032 regulation of trichome patterning(GO:1900032) negative regulation of trichome patterning(GO:1900033)
0.4 3.1 GO:0006542 glutamine biosynthetic process(GO:0006542)
0.4 4.9 GO:0010206 photosystem II repair(GO:0010206)
0.4 2.6 GO:0055129 L-proline biosynthetic process(GO:0055129)
0.4 1.3 GO:0002698 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.4 1.3 GO:0009233 menaquinone metabolic process(GO:0009233) menaquinone biosynthetic process(GO:0009234)
0.4 1.2 GO:0045900 negative regulation of translational elongation(GO:0045900)
0.4 4.9 GO:0032544 plastid translation(GO:0032544)
0.4 2.8 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.4 3.9 GO:0010088 phloem development(GO:0010088)
0.4 3.5 GO:0010196 nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066)
0.4 1.1 GO:0006428 isoleucyl-tRNA aminoacylation(GO:0006428)
0.4 1.1 GO:0015717 triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436)
0.4 1.1 GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine(GO:0019279) 'de novo' L-methionine biosynthetic process(GO:0071266)
0.3 1.7 GO:0009772 photosynthetic electron transport in photosystem II(GO:0009772)
0.3 4.0 GO:1902183 regulation of shoot apical meristem development(GO:1902183)
0.3 2.0 GO:0009650 UV protection(GO:0009650)
0.3 1.0 GO:0044208 'de novo' AMP biosynthetic process(GO:0044208)
0.3 0.9 GO:0010275 NAD(P)H dehydrogenase complex assembly(GO:0010275)
0.3 1.2 GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process(GO:0046901)
0.3 0.3 GO:0051341 regulation of oxidoreductase activity(GO:0051341)
0.3 0.9 GO:0090143 nucleoid organization(GO:0090143)
0.3 5.6 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.3 1.1 GO:0001887 selenium compound metabolic process(GO:0001887)
0.3 4.5 GO:0015976 carbon utilization(GO:0015976)
0.3 0.8 GO:0010080 regulation of floral meristem growth(GO:0010080) floral meristem growth(GO:0010451)
0.3 1.4 GO:0019745 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.3 1.3 GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning(GO:0060774)
0.3 1.0 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.3 0.8 GO:0055068 nickel cation transmembrane transport(GO:0035444) cobalt ion homeostasis(GO:0055068)
0.2 1.0 GO:0090308 regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309)
0.2 1.0 GO:0033306 phytol metabolic process(GO:0033306)
0.2 4.7 GO:0006949 syncytium formation(GO:0006949)
0.2 3.2 GO:0045723 positive regulation of fatty acid biosynthetic process(GO:0045723)
0.2 1.2 GO:1904961 quiescent center organization(GO:1904961)
0.2 1.0 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.2 0.7 GO:0033321 homomethionine metabolic process(GO:0033321) glucosinolate biosynthetic process from homomethionine(GO:0033506)
0.2 1.2 GO:0010086 embryonic root morphogenesis(GO:0010086)
0.2 0.7 GO:0009915 phloem sucrose loading(GO:0009915)
0.2 1.6 GO:0080143 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.2 3.5 GO:0010315 auxin efflux(GO:0010315)
0.2 0.9 GO:0080003 thalianol metabolic process(GO:0080003)
0.2 1.4 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.2 0.9 GO:0046741 transport of virus in host, tissue to tissue(GO:0046741)
0.2 0.7 GO:0036292 DNA rewinding(GO:0036292)
0.2 1.1 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.2 0.6 GO:1900364 negative regulation of mRNA 3'-end processing(GO:0031441) negative regulation of mRNA processing(GO:0050686) negative regulation of mRNA polyadenylation(GO:1900364) negative regulation of mRNA metabolic process(GO:1903312)
0.2 0.6 GO:0035404 histone-serine phosphorylation(GO:0035404) histone H3-S10 phosphorylation(GO:0043987)
0.2 1.5 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.2 3.4 GO:0010588 cotyledon vascular tissue pattern formation(GO:0010588)
0.2 0.6 GO:0006557 S-adenosylmethioninamine biosynthetic process(GO:0006557) S-adenosylmethioninamine metabolic process(GO:0046499)
0.2 1.9 GO:0033314 mitotic DNA replication checkpoint(GO:0033314)
0.2 0.6 GO:0006148 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.2 0.6 GO:0090322 regulation of superoxide metabolic process(GO:0090322)
0.2 0.8 GO:0045922 negative regulation of fatty acid metabolic process(GO:0045922)
0.2 1.2 GO:0042360 fat-soluble vitamin metabolic process(GO:0006775) vitamin E biosynthetic process(GO:0010189) vitamin E metabolic process(GO:0042360) fat-soluble vitamin biosynthetic process(GO:0042362)
0.2 0.8 GO:0009647 skotomorphogenesis(GO:0009647)
0.2 1.0 GO:0009806 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.2 0.8 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.2 0.6 GO:0008645 hexose transport(GO:0008645) fructose transport(GO:0015755) vacuolar transmembrane transport(GO:0034486)
0.2 0.7 GO:0032988 ribonucleoprotein complex disassembly(GO:0032988)
0.2 2.8 GO:0055069 zinc ion homeostasis(GO:0055069)
0.2 0.9 GO:0006788 heme oxidation(GO:0006788)
0.2 1.8 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.2 0.5 GO:1904215 regulation of protein import into chloroplast stroma(GO:1904215)
0.2 2.9 GO:0048759 xylem vessel member cell differentiation(GO:0048759)
0.2 2.9 GO:0009299 mRNA transcription(GO:0009299)
0.2 1.1 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.2 1.1 GO:0009643 photosynthetic acclimation(GO:0009643)
0.2 6.4 GO:0042335 cuticle development(GO:0042335)
0.2 1.1 GO:0009090 homoserine biosynthetic process(GO:0009090)
0.2 1.8 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.2 0.7 GO:0006097 glyoxylate cycle(GO:0006097)
0.2 0.7 GO:0010236 plastoquinone biosynthetic process(GO:0010236)
0.2 1.2 GO:0080117 secondary growth(GO:0080117)
0.2 0.9 GO:0010390 histone monoubiquitination(GO:0010390)
0.2 1.2 GO:0015909 long-chain fatty acid transport(GO:0015909)
0.2 3.7 GO:0046688 response to copper ion(GO:0046688)
0.2 0.5 GO:0090549 response to carbon starvation(GO:0090549)
0.2 1.2 GO:0006751 glutathione catabolic process(GO:0006751)
0.2 3.4 GO:0010207 photosystem II assembly(GO:0010207)
0.2 0.6 GO:0010495 long-distance posttranscriptional gene silencing(GO:0010495)
0.2 0.5 GO:0001560 regulation of cell growth by extracellular stimulus(GO:0001560)
0.2 0.6 GO:0009305 protein biotinylation(GO:0009305)
0.2 4.0 GO:0009913 epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855)
0.2 16.1 GO:0015979 photosynthesis(GO:0015979)
0.2 2.7 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.2 0.5 GO:0097056 seryl-tRNA aminoacylation(GO:0006434) selenocysteinyl-tRNA(Sec) biosynthetic process(GO:0097056)
0.2 0.8 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.2 0.8 GO:0090342 regulation of cell aging(GO:0090342)
0.1 3.1 GO:0010492 maintenance of shoot apical meristem identity(GO:0010492)
0.1 3.9 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.1 0.6 GO:0001578 microtubule bundle formation(GO:0001578)
0.1 0.1 GO:0060772 leaf phyllotactic patterning(GO:0060772)
0.1 2.1 GO:0009098 leucine biosynthetic process(GO:0009098)
0.1 0.3 GO:0090227 regulation of red or far-red light signaling pathway(GO:0090227)
0.1 0.4 GO:0048629 trichome patterning(GO:0048629)
0.1 0.5 GO:0009865 pollen tube adhesion(GO:0009865) cell-cell adhesion(GO:0098609) multi organism cell adhesion(GO:0098740)
0.1 0.3 GO:0035264 multicellular organism growth(GO:0035264) regulation of multicellular organism growth(GO:0040014)
0.1 0.9 GO:0010155 regulation of proton transport(GO:0010155)
0.1 1.0 GO:0016045 detection of bacterium(GO:0016045)
0.1 0.8 GO:0000395 mRNA 5'-splice site recognition(GO:0000395)
0.1 0.6 GO:0048871 multicellular organismal homeostasis(GO:0048871)
0.1 0.5 GO:0080094 response to trehalose-6-phosphate(GO:0080094)
0.1 0.4 GO:0043171 peptide catabolic process(GO:0043171)
0.1 0.7 GO:0072337 modified amino acid transport(GO:0072337)
0.1 0.1 GO:0048832 specification of organ number(GO:0048832) specification of floral organ number(GO:0048833)
0.1 0.2 GO:0030174 regulation of DNA-dependent DNA replication initiation(GO:0030174)
0.1 0.5 GO:2000573 positive regulation of DNA biosynthetic process(GO:2000573)
0.1 0.5 GO:0010677 negative regulation of cellular carbohydrate metabolic process(GO:0010677)
0.1 0.6 GO:0033591 response to L-ascorbic acid(GO:0033591)
0.1 0.3 GO:0000050 urea cycle(GO:0000050)
0.1 0.5 GO:0006741 NADP biosynthetic process(GO:0006741)
0.1 0.3 GO:0010198 synergid death(GO:0010198)
0.1 0.6 GO:0005980 glycogen catabolic process(GO:0005980)
0.1 0.3 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.1 0.3 GO:0030104 water homeostasis(GO:0030104)
0.1 0.3 GO:0044380 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.1 0.3 GO:0035864 response to potassium ion(GO:0035864)
0.1 0.8 GO:2000601 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) regulation of actin nucleation(GO:0051125) positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.1 0.4 GO:0048830 adventitious root development(GO:0048830)
0.1 5.0 GO:0019762 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.1 2.8 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.1 0.6 GO:0030308 negative regulation of cell growth(GO:0030308)
0.1 0.3 GO:0035246 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine(GO:0019919) histone arginine methylation(GO:0034969) peptidyl-arginine N-methylation(GO:0035246) peptidyl-arginine omega-N-methylation(GO:0035247)
0.1 1.2 GO:0006857 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.1 0.4 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.1 1.3 GO:0006538 glutamate catabolic process(GO:0006538)
0.1 1.0 GO:1901463 regulation of chlorophyll biosynthetic process(GO:0010380) regulation of tetrapyrrole biosynthetic process(GO:1901463)
0.1 1.1 GO:0018026 peptidyl-lysine monomethylation(GO:0018026)
0.1 0.2 GO:0071492 response to UV-A(GO:0070141) cellular response to UV-A(GO:0071492)
0.1 0.3 GO:0006527 arginine catabolic process(GO:0006527)
0.1 1.3 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.1 0.3 GO:0010444 guard mother cell differentiation(GO:0010444)
0.1 0.6 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.1 2.2 GO:0009612 response to mechanical stimulus(GO:0009612)
0.1 0.4 GO:0007349 cellularization(GO:0007349)
0.1 0.2 GO:0044839 G2/M transition of mitotic cell cycle(GO:0000086) cell cycle G2/M phase transition(GO:0044839)
0.1 0.1 GO:0033566 gamma-tubulin complex localization(GO:0033566)
0.1 0.3 GO:0042539 hypotonic salinity response(GO:0042539)
0.1 1.3 GO:0009641 shade avoidance(GO:0009641)
0.1 0.3 GO:0033194 response to hydroperoxide(GO:0033194)
0.1 0.3 GO:0008153 para-aminobenzoic acid biosynthetic process(GO:0008153)
0.1 0.3 GO:0001672 regulation of chromatin assembly or disassembly(GO:0001672)
0.1 1.9 GO:0009944 polarity specification of adaxial/abaxial axis(GO:0009944) specification of axis polarity(GO:0065001)
0.1 0.3 GO:0009831 plant-type cell wall modification involved in multidimensional cell growth(GO:0009831)
0.1 0.8 GO:0080110 sporopollenin biosynthetic process(GO:0080110)
0.1 2.2 GO:0010166 wax metabolic process(GO:0010166)
0.1 0.4 GO:0046949 fatty-acyl-CoA biosynthetic process(GO:0046949) malonyl-CoA biosynthetic process(GO:2001295)
0.1 0.8 GO:0033619 membrane protein proteolysis(GO:0033619)
0.1 0.3 GO:0006297 nucleotide-excision repair, DNA gap filling(GO:0006297)
0.1 0.6 GO:0046621 negative regulation of organ growth(GO:0046621)
0.1 0.7 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.1 1.0 GO:0005987 sucrose catabolic process(GO:0005987)
0.1 0.2 GO:0071258 cellular response to gravity(GO:0071258)
0.1 0.2 GO:0051101 regulation of DNA binding(GO:0051101)
0.1 0.5 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.1 0.5 GO:0006013 mannose metabolic process(GO:0006013)
0.1 3.2 GO:0045489 pectin biosynthetic process(GO:0045489)
0.1 0.7 GO:1901642 nucleoside transmembrane transport(GO:1901642)
0.1 0.2 GO:0010067 procambium histogenesis(GO:0010067)
0.1 0.7 GO:0044774 mitotic DNA integrity checkpoint(GO:0044774)
0.1 0.3 GO:2000736 regulation of stem cell population maintenance(GO:2000036) regulation of stem cell differentiation(GO:2000736)
0.1 0.2 GO:0035461 thiamine pyrophosphate transport(GO:0030974) vitamin transmembrane transport(GO:0035461) azole transport(GO:0045117)
0.1 0.9 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.1 0.3 GO:0031507 heterochromatin assembly(GO:0031507)
0.1 0.1 GO:0045912 negative regulation of carbohydrate metabolic process(GO:0045912)
0.1 0.5 GO:0070828 heterochromatin organization(GO:0070828)
0.1 0.2 GO:0034389 lipid particle organization(GO:0034389)
0.1 0.3 GO:2000067 positive regulation of cell differentiation(GO:0045597) regulation of root morphogenesis(GO:2000067)
0.1 0.5 GO:0097577 intracellular sequestering of iron ion(GO:0006880) cellular manganese ion homeostasis(GO:0030026) sequestering of iron ion(GO:0097577)
0.1 0.3 GO:0071323 cellular response to chitin(GO:0071323)
0.1 1.1 GO:0042044 water transport(GO:0006833) fluid transport(GO:0042044)
0.1 2.0 GO:0048825 cotyledon development(GO:0048825)
0.1 0.3 GO:0035434 copper ion transmembrane transport(GO:0035434)
0.1 0.2 GO:0042891 tetracycline transport(GO:0015904) antibiotic transport(GO:0042891)
0.1 0.3 GO:0097036 regulation of plasma membrane sterol distribution(GO:0097036)
0.1 0.2 GO:0016572 histone phosphorylation(GO:0016572)
0.1 0.4 GO:0010304 PSII associated light-harvesting complex II catabolic process(GO:0010304)
0.1 1.1 GO:0046501 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.1 1.0 GO:0006722 triterpenoid metabolic process(GO:0006722)
0.1 1.5 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.1 4.5 GO:0007018 microtubule-based movement(GO:0007018)
0.1 0.7 GO:0080086 stamen filament development(GO:0080086)
0.1 0.2 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.1 1.8 GO:0099518 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.1 1.7 GO:0006284 base-excision repair(GO:0006284)
0.1 0.4 GO:0033384 geranyl diphosphate metabolic process(GO:0033383) geranyl diphosphate biosynthetic process(GO:0033384)
0.1 0.2 GO:0072388 FAD biosynthetic process(GO:0006747) flavin adenine dinucleotide biosynthetic process(GO:0072388)
0.1 1.2 GO:0010227 floral organ abscission(GO:0010227)
0.1 0.5 GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299)
0.1 1.0 GO:0006754 ATP biosynthetic process(GO:0006754) energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.1 0.5 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 0.5 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.1 0.2 GO:0010422 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.1 0.2 GO:0010338 leaf formation(GO:0010338)
0.1 0.7 GO:2000104 negative regulation of DNA-dependent DNA replication(GO:2000104)
0.1 0.4 GO:0010158 abaxial cell fate specification(GO:0010158)
0.1 0.3 GO:0009092 homoserine metabolic process(GO:0009092)
0.1 0.5 GO:0042793 transcription from plastid promoter(GO:0042793)
0.1 0.1 GO:0051055 negative regulation of lipid biosynthetic process(GO:0051055)
0.1 0.4 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.0 0.2 GO:0007142 male meiosis II(GO:0007142)
0.0 0.3 GO:0070814 hydrogen sulfide biosynthetic process(GO:0070814)
0.0 0.3 GO:1905177 tracheary element differentiation(GO:1905177)
0.0 0.0 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.0 0.1 GO:1900459 positive regulation of brassinosteroid mediated signaling pathway(GO:1900459)
0.0 0.5 GO:0010262 somatic embryogenesis(GO:0010262)
0.0 1.1 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.0 2.4 GO:0010101 post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102)
0.0 0.1 GO:0010124 phenylacetate catabolic process(GO:0010124)
0.0 0.1 GO:0030834 regulation of actin filament depolymerization(GO:0030834)
0.0 0.9 GO:0019852 L-ascorbic acid metabolic process(GO:0019852) L-ascorbic acid biosynthetic process(GO:0019853)
0.0 0.3 GO:0043486 histone exchange(GO:0043486)
0.0 0.4 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961)
0.0 0.2 GO:0006449 regulation of translational termination(GO:0006449)
0.0 0.1 GO:0043157 response to cation stress(GO:0043157) positive regulation of potassium ion transport(GO:0043268)
0.0 1.1 GO:0009585 phototransduction(GO:0007602) detection of light stimulus(GO:0009583) red, far-red light phototransduction(GO:0009585)
0.0 0.5 GO:0005978 glycogen biosynthetic process(GO:0005978)
0.0 0.5 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)
0.0 0.3 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.0 0.2 GO:0019419 sulfate reduction(GO:0019419)
0.0 0.2 GO:0051096 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.0 1.2 GO:0010218 response to far red light(GO:0010218)
0.0 0.3 GO:0000244 spliceosomal tri-snRNP complex assembly(GO:0000244)
0.0 0.1 GO:0048479 style development(GO:0048479)
0.0 0.5 GO:0031408 oxylipin biosynthetic process(GO:0031408)
0.0 2.3 GO:0009664 plant-type cell wall organization(GO:0009664)
0.0 0.7 GO:0010103 stomatal complex morphogenesis(GO:0010103)
0.0 0.8 GO:0010017 red or far-red light signaling pathway(GO:0010017) cellular response to red or far red light(GO:0071489)
0.0 0.3 GO:0006821 chloride transport(GO:0006821)
0.0 0.2 GO:0015940 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.0 0.1 GO:0090646 mitochondrial tRNA processing(GO:0090646)
0.0 0.4 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 0.3 GO:0015804 neutral amino acid transport(GO:0015804)
0.0 0.1 GO:1990570 GDP-mannose transport(GO:0015784) purine nucleotide-sugar transmembrane transport(GO:0090480) GDP-mannose transmembrane transport(GO:1990570)
0.0 0.1 GO:0061087 positive regulation of histone H3-K27 methylation(GO:0061087)
0.0 2.3 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.0 0.2 GO:0007043 cell-cell junction assembly(GO:0007043)
0.0 0.4 GO:1990937 xylan acetylation(GO:1990937)
0.0 0.1 GO:0010500 transmitting tissue development(GO:0010500)
0.0 0.4 GO:0006465 signal peptide processing(GO:0006465)
0.0 0.1 GO:2001293 fatty-acyl-CoA catabolic process(GO:0036115) malonyl-CoA metabolic process(GO:2001293) malonyl-CoA catabolic process(GO:2001294)
0.0 0.2 GO:1900908 regulation of ethylene biosynthetic process(GO:0010364) regulation of sulfur amino acid metabolic process(GO:0031335) regulation of olefin metabolic process(GO:1900908) regulation of olefin biosynthetic process(GO:1900911)
0.0 0.1 GO:0043693 monoterpene biosynthetic process(GO:0043693)
0.0 2.9 GO:0045490 pectin catabolic process(GO:0045490)
0.0 0.5 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 0.3 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.0 0.7 GO:0009142 nucleoside triphosphate biosynthetic process(GO:0009142)
0.0 0.3 GO:0048645 formation of organ boundary(GO:0010160) organ boundary specification between lateral organs and the meristem(GO:0010199) organ formation(GO:0048645) formation of anatomical boundary(GO:0048859)
0.0 0.7 GO:0010449 root meristem growth(GO:0010449)
0.0 1.0 GO:0019761 S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761)
0.0 0.5 GO:0034314 Arp2/3 complex-mediated actin nucleation(GO:0034314)
0.0 0.3 GO:0000712 resolution of meiotic recombination intermediates(GO:0000712)
0.0 1.0 GO:0032784 regulation of DNA-templated transcription, elongation(GO:0032784)
0.0 0.6 GO:0030041 actin filament polymerization(GO:0030041)
0.0 1.9 GO:0006400 tRNA modification(GO:0006400)
0.0 0.3 GO:0006189 'de novo' IMP biosynthetic process(GO:0006189)
0.0 0.2 GO:0010093 specification of floral organ identity(GO:0010093)
0.0 0.1 GO:0022610 cell adhesion(GO:0007155) biological adhesion(GO:0022610)
0.0 0.4 GO:0006102 isocitrate metabolic process(GO:0006102)
0.0 0.8 GO:0009902 chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667)
0.0 1.7 GO:0048544 cell recognition(GO:0008037) recognition of pollen(GO:0048544)
0.0 0.4 GO:0006032 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.0 0.1 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.0 0.6 GO:0010027 thylakoid membrane organization(GO:0010027)
0.0 0.5 GO:0050821 protein stabilization(GO:0050821)
0.0 0.4 GO:0010152 pollen maturation(GO:0010152)
0.0 1.4 GO:0006906 vesicle fusion(GO:0006906)
0.0 0.2 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0 0.4 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 1.0 GO:0030244 cellulose biosynthetic process(GO:0030244)
0.0 0.5 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.0 1.4 GO:0009630 gravitropism(GO:0009630)
0.0 0.1 GO:2000757 negative regulation of histone acetylation(GO:0035067) negative regulation of protein acetylation(GO:1901984) negative regulation of peptidyl-lysine acetylation(GO:2000757)
0.0 0.2 GO:0033517 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.0 0.3 GO:0006268 DNA unwinding involved in DNA replication(GO:0006268)
0.0 0.3 GO:0000373 Group II intron splicing(GO:0000373)
0.0 0.1 GO:0042908 xenobiotic transport(GO:0042908)
0.0 0.5 GO:0045168 cell-cell signaling involved in cell fate commitment(GO:0045168)
0.0 0.4 GO:0042593 glucose homeostasis(GO:0042593)
0.0 0.4 GO:0006863 purine nucleobase transport(GO:0006863)
0.0 0.2 GO:1902223 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.2 GO:0016109 tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117)
0.0 1.1 GO:0009640 photomorphogenesis(GO:0009640)
0.0 0.1 GO:0015918 sterol transport(GO:0015918)
0.0 0.3 GO:0006298 mismatch repair(GO:0006298)
0.0 0.4 GO:0030148 sphingolipid biosynthetic process(GO:0030148)
0.0 0.1 GO:0030497 fatty acid elongation(GO:0030497)
0.0 0.1 GO:0009610 response to symbiotic fungus(GO:0009610)
0.0 0.1 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.1 GO:0033499 galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499)
0.0 0.0 GO:0051972 regulation of telomerase activity(GO:0051972)
0.0 0.1 GO:0043406 activation of MAPK activity(GO:0000187) positive regulation of MAP kinase activity(GO:0043406)
0.0 0.2 GO:0006415 translational termination(GO:0006415)
0.0 0.1 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.0 1.2 GO:0080167 response to karrikin(GO:0080167)
0.0 0.4 GO:0016575 histone deacetylation(GO:0016575)
0.0 0.2 GO:0010105 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 0.2 GO:0071051 polyadenylation-dependent snoRNA 3'-end processing(GO:0071051)
0.0 0.4 GO:0000028 ribosomal small subunit assembly(GO:0000028)
0.0 0.1 GO:0048441 petal development(GO:0048441) corolla development(GO:0048465)
0.0 0.2 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.0 0.1 GO:0034367 DNA-templated transcriptional open complex formation(GO:0001112) transcriptional open complex formation at RNA polymerase II promoter(GO:0001113) protein-DNA complex remodeling(GO:0001120) macromolecular complex remodeling(GO:0034367)
0.0 0.1 GO:2001289 lipid X metabolic process(GO:2001289)
0.0 0.1 GO:0051131 chaperone-mediated protein complex assembly(GO:0051131)
0.0 0.2 GO:0015693 magnesium ion transport(GO:0015693)
0.0 0.2 GO:0052803 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.0 0.2 GO:0043572 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.0 1.1 GO:0009698 phenylpropanoid metabolic process(GO:0009698)
0.0 0.1 GO:0046578 regulation of Ras protein signal transduction(GO:0046578) regulation of small GTPase mediated signal transduction(GO:0051056)
0.0 0.4 GO:0016485 protein processing(GO:0016485)
0.0 0.1 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.0 0.2 GO:0015743 malate transport(GO:0015743)
0.0 0.1 GO:0015689 molybdate ion transport(GO:0015689)
0.0 0.2 GO:0046246 terpene biosynthetic process(GO:0046246)
0.0 0.1 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655) phosphatidylglycerol metabolic process(GO:0046471)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 7.4 GO:0009503 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.6 4.9 GO:0009538 photosystem I reaction center(GO:0009538)
0.5 1.4 GO:0030093 chloroplast photosystem I(GO:0030093)
0.4 1.3 GO:0009521 photosystem(GO:0009521) photosystem II(GO:0009523)
0.4 1.6 GO:0016461 unconventional myosin complex(GO:0016461)
0.4 6.4 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.4 1.1 GO:0009522 photosystem I(GO:0009522)
0.4 0.4 GO:0031357 intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357)
0.3 7.3 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.3 8.4 GO:0009543 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.3 1.1 GO:0009317 acetyl-CoA carboxylase complex(GO:0009317)
0.2 1.8 GO:0098807 chloroplast thylakoid membrane protein complex(GO:0098807)
0.2 13.0 GO:0010287 plastoglobule(GO:0010287)
0.2 0.7 GO:0016323 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.2 1.0 GO:0034425 etioplast envelope(GO:0034425) etioplast membrane(GO:0034426)
0.2 1.0 GO:0010007 magnesium chelatase complex(GO:0010007)
0.2 42.5 GO:0009535 chloroplast thylakoid membrane(GO:0009535)
0.2 0.5 GO:0070382 exocytic vesicle(GO:0070382)
0.2 1.0 GO:0031209 SCAR complex(GO:0031209)
0.2 0.6 GO:0032133 chromosome passenger complex(GO:0032133)
0.2 2.2 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.2 10.5 GO:0009534 chloroplast thylakoid(GO:0009534)
0.1 2.4 GO:0009531 secondary cell wall(GO:0009531)
0.1 9.7 GO:0009579 thylakoid(GO:0009579)
0.1 0.6 GO:0005719 nuclear euchromatin(GO:0005719)
0.1 0.5 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.1 0.5 GO:0005655 ribonuclease MRP complex(GO:0000172) nucleolar ribonuclease P complex(GO:0005655) multimeric ribonuclease P complex(GO:0030681)
0.1 0.3 GO:0044614 nuclear pore cytoplasmic filaments(GO:0044614)
0.1 0.5 GO:0032044 DSIF complex(GO:0032044)
0.1 0.3 GO:1990752 microtubule end(GO:1990752)
0.1 1.0 GO:0010369 chromocenter(GO:0010369)
0.1 0.8 GO:0098553 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.1 2.9 GO:0005811 lipid particle(GO:0005811)
0.1 0.3 GO:0008622 epsilon DNA polymerase complex(GO:0008622)
0.1 0.2 GO:1990298 bub1-bub3 complex(GO:1990298)
0.1 1.1 GO:0055028 cortical microtubule(GO:0055028)
0.1 0.9 GO:0016459 myosin complex(GO:0016459)
0.1 0.3 GO:0031012 extracellular matrix(GO:0031012)
0.1 16.0 GO:0048046 apoplast(GO:0048046)
0.1 0.8 GO:0045298 tubulin complex(GO:0045298)
0.1 0.4 GO:0005787 signal peptidase complex(GO:0005787)
0.1 1.4 GO:0005871 kinesin complex(GO:0005871)
0.1 0.3 GO:0000812 Swr1 complex(GO:0000812)
0.1 0.2 GO:0042645 mitochondrial nucleoid(GO:0042645)
0.1 0.8 GO:0000792 heterochromatin(GO:0000792)
0.1 0.2 GO:0043186 P granule(GO:0043186) pole plasm(GO:0045495) germ plasm(GO:0060293)
0.0 0.3 GO:0000796 condensin complex(GO:0000796)
0.0 0.3 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.0 0.5 GO:0042555 MCM complex(GO:0042555)
0.0 0.2 GO:0010316 pyrophosphate-dependent phosphofructokinase complex(GO:0010316)
0.0 0.3 GO:0005784 Sec61 translocon complex(GO:0005784)
0.0 17.2 GO:0009570 chloroplast stroma(GO:0009570)
0.0 0.3 GO:0031379 RNA-directed RNA polymerase complex(GO:0031379) nuclear RNA-directed RNA polymerase complex(GO:0031380)
0.0 10.3 GO:0031225 anchored component of membrane(GO:0031225)
0.0 0.2 GO:0030870 Mre11 complex(GO:0030870)
0.0 0.3 GO:0035861 site of double-strand break(GO:0035861)
0.0 0.9 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.0 0.2 GO:0031261 DNA replication preinitiation complex(GO:0031261)
0.0 0.1 GO:0030130 clathrin coat of trans-Golgi network vesicle(GO:0030130)
0.0 0.1 GO:0000783 telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783)
0.0 0.2 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.0 1.9 GO:0005874 microtubule(GO:0005874)
0.0 0.5 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.0 4.9 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.5 GO:0005762 mitochondrial large ribosomal subunit(GO:0005762)
0.0 0.3 GO:0000127 transcription factor TFIIIC complex(GO:0000127)
0.0 0.1 GO:0070505 pollen coat(GO:0070505)
0.0 0.1 GO:0071818 BAT3 complex(GO:0071818)
0.0 0.3 GO:0005801 cis-Golgi network(GO:0005801)
0.0 0.0 GO:0009514 glyoxysome(GO:0009514)
0.0 37.3 GO:0005576 extracellular region(GO:0005576)
0.0 0.6 GO:0031903 peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903)
0.0 4.0 GO:0009941 chloroplast envelope(GO:0009941)
0.0 0.2 GO:0009986 cell surface(GO:0009986)
0.0 0.1 GO:0044545 NSL complex(GO:0044545)
0.0 0.1 GO:0010168 ER body(GO:0010168)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 7.4 GO:0016984 ribulose-bisphosphate carboxylase activity(GO:0016984)
1.1 3.4 GO:0051738 xanthophyll binding(GO:0051738)
0.9 7.8 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.7 2.1 GO:0015026 coreceptor activity(GO:0015026)
0.7 2.7 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
0.7 2.1 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.7 2.6 GO:0004349 glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350)
0.6 8.9 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.6 13.9 GO:0016168 chlorophyll binding(GO:0016168)
0.6 2.2 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.5 2.7 GO:0015434 cadmium-transporting ATPase activity(GO:0015434) zinc-exporting ATPase activity(GO:0016463)
0.5 2.3 GO:0004333 fumarate hydratase activity(GO:0004333)
0.4 3.1 GO:0004356 glutamate-ammonia ligase activity(GO:0004356)
0.4 3.3 GO:0019137 thioglucosidase activity(GO:0019137)
0.4 1.2 GO:0080106 3-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080102) 5-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080104) 7-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080106)
0.4 1.1 GO:0004822 isoleucine-tRNA ligase activity(GO:0004822)
0.4 1.1 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567)
0.4 1.1 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
0.4 1.1 GO:0009374 biotin binding(GO:0009374)
0.4 2.1 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
0.4 1.1 GO:0004528 phosphodiesterase I activity(GO:0004528) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311)
0.4 1.1 GO:0047804 cysteine-S-conjugate beta-lyase activity(GO:0047804)
0.3 1.4 GO:0042299 lupeol synthase activity(GO:0042299)
0.3 1.7 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.3 1.0 GO:0010283 pinoresinol reductase activity(GO:0010283)
0.3 1.0 GO:0016842 amidine-lyase activity(GO:0016842)
0.3 1.2 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.3 1.2 GO:0009784 transmembrane receptor histidine kinase activity(GO:0009784) transmembrane histidine kinase cytokinin receptor activity(GO:0009885)
0.3 1.5 GO:0004127 cytidylate kinase activity(GO:0004127)
0.3 1.1 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.3 5.1 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.3 1.1 GO:0003862 3-isopropylmalate dehydrogenase activity(GO:0003862)
0.3 0.5 GO:0009884 cytokinin receptor activity(GO:0009884)
0.3 0.8 GO:0004563 beta-N-acetylhexosaminidase activity(GO:0004563)
0.3 1.0 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.3 0.8 GO:0015087 cobalt ion transmembrane transporter activity(GO:0015087) nickel cation transmembrane transporter activity(GO:0015099)
0.3 1.0 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.2 1.2 GO:0043024 ribosomal small subunit binding(GO:0043024)
0.2 2.0 GO:0052622 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.2 1.2 GO:0004326 tetrahydrofolylpolyglutamate synthase activity(GO:0004326)
0.2 1.0 GO:0015245 fatty acid transporter activity(GO:0015245)
0.2 5.9 GO:0004565 beta-galactosidase activity(GO:0004565)
0.2 5.4 GO:0102337 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.2 0.7 GO:0009671 nitrate:proton symporter activity(GO:0009671)
0.2 0.7 GO:0010354 homogentisate prenyltransferase activity(GO:0010354)
0.2 1.4 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.2 1.1 GO:0030267 glyoxylate reductase (NADP) activity(GO:0030267)
0.2 1.1 GO:0004324 ferredoxin-NADP+ reductase activity(GO:0004324)
0.2 0.7 GO:0003962 cystathionine gamma-synthase activity(GO:0003962)
0.2 0.6 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.2 1.1 GO:0004072 aspartate kinase activity(GO:0004072)
0.2 0.6 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
0.2 1.0 GO:0036374 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.2 1.0 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
0.2 2.1 GO:0047938 glucose-6-phosphate 1-epimerase activity(GO:0047938)
0.2 1.3 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)
0.2 1.8 GO:0008199 ferric iron binding(GO:0008199)
0.2 2.4 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.2 0.9 GO:0004781 sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.2 2.0 GO:0051537 2 iron, 2 sulfur cluster binding(GO:0051537)
0.2 1.4 GO:0000095 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.2 1.9 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.2 0.9 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.2 1.0 GO:0022829 porin activity(GO:0015288) wide pore channel activity(GO:0022829)
0.2 1.9 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.2 1.0 GO:0016851 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.2 0.8 GO:0035173 histone kinase activity(GO:0035173)
0.2 1.8 GO:0016723 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.2 0.5 GO:0036310 annealing helicase activity(GO:0036310) annealing activity(GO:0097617)
0.2 4.0 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.2 0.8 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.2 0.6 GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity(GO:0004077) biotin-protein ligase activity(GO:0018271)
0.2 0.5 GO:0004828 serine-tRNA ligase activity(GO:0004828)
0.2 0.6 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.1 0.4 GO:0010521 telomerase inhibitor activity(GO:0010521)
0.1 0.4 GO:1990465 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.1 2.9 GO:0022839 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.1 1.6 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 1.1 GO:0004392 heme oxygenase (decyclizing) activity(GO:0004392)
0.1 1.3 GO:0030976 thiamine pyrophosphate binding(GO:0030976)
0.1 0.6 GO:0005353 fructose transmembrane transporter activity(GO:0005353)
0.1 0.6 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.1 0.5 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.1 0.7 GO:0008430 selenium binding(GO:0008430)
0.1 1.6 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.1 0.4 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.1 0.8 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.1 0.5 GO:0010285 L,L-diaminopimelate aminotransferase activity(GO:0010285)
0.1 0.8 GO:0031177 phosphopantetheine binding(GO:0031177)
0.1 2.6 GO:0015250 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.1 3.9 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.1 0.6 GO:0005366 myo-inositol:proton symporter activity(GO:0005366)
0.1 1.1 GO:0010340 carboxyl-O-methyltransferase activity(GO:0010340)
0.1 1.0 GO:0010428 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.1 3.2 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 0.8 GO:0051018 protein kinase A regulatory subunit binding(GO:0034237) protein kinase A binding(GO:0051018) Arp2/3 complex binding(GO:0071933)
0.1 0.6 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.1 2.1 GO:0003688 DNA replication origin binding(GO:0003688)
0.1 0.3 GO:0004044 amidophosphoribosyltransferase activity(GO:0004044)
0.1 0.6 GO:0045431 flavonol synthase activity(GO:0045431)
0.1 0.4 GO:0004075 biotin carboxylase activity(GO:0004075)
0.1 1.0 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.1 0.3 GO:0016277 [myelin basic protein]-arginine N-methyltransferase activity(GO:0016277)
0.1 0.3 GO:0004353 glutamate dehydrogenase [NAD(P)+] activity(GO:0004353)
0.1 0.5 GO:0004001 adenosine kinase activity(GO:0004001)
0.1 0.6 GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides(GO:0016819) adenylylsulfatase activity(GO:0047627)
0.1 0.5 GO:0010334 sesquiterpene synthase activity(GO:0010334)
0.1 0.4 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.1 0.8 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.1 0.7 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.1 0.4 GO:0010313 phytochrome binding(GO:0010313)
0.1 0.3 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
0.1 0.4 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.1 0.8 GO:0008379 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.1 1.9 GO:0080032 methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032)
0.1 0.9 GO:0004784 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.1 0.4 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.1 0.2 GO:0016971 flavin-linked sulfhydryl oxidase activity(GO:0016971) thiol oxidase activity(GO:0016972)
0.1 0.9 GO:0061505 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.1 0.3 GO:0008297 single-stranded DNA exodeoxyribonuclease activity(GO:0008297)
0.1 1.8 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.1 0.4 GO:0005354 galactose transmembrane transporter activity(GO:0005354)
0.1 0.6 GO:0051192 ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process(GO:0000036) ACP phosphopantetheine attachment site binding(GO:0044620) prosthetic group binding(GO:0051192)
0.1 0.7 GO:1904680 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.1 0.2 GO:0046480 galactolipid galactosyltransferase activity(GO:0046480)
0.1 3.8 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.1 0.4 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.1 0.4 GO:0015367 oxoglutarate:malate antiporter activity(GO:0015367)
0.1 0.5 GO:0008878 glucose-1-phosphate adenylyltransferase activity(GO:0008878)
0.1 0.4 GO:0016436 rRNA (uridine) methyltransferase activity(GO:0016436) rRNA (uridine-N3-)-methyltransferase activity(GO:0070042)
0.1 0.9 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.1 0.2 GO:0090422 thiamine pyrophosphate transporter activity(GO:0090422)
0.1 1.6 GO:0016864 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.1 0.4 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.1 0.3 GO:0030742 GTP-dependent protein binding(GO:0030742)
0.1 0.6 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.1 0.5 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.1 1.0 GO:0000250 lanosterol synthase activity(GO:0000250) oxidosqualene cyclase activity(GO:0031559)
0.1 2.3 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.1 2.2 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)
0.1 0.2 GO:0004424 imidazoleglycerol-phosphate dehydratase activity(GO:0004424)
0.1 0.6 GO:0017136 NAD-dependent histone deacetylase activity(GO:0017136) histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) NAD-dependent protein deacetylase activity(GO:0034979)
0.1 4.6 GO:0003777 microtubule motor activity(GO:0003777)
0.1 0.6 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.1 1.8 GO:0000146 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.1 0.4 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.1 0.5 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.1 0.5 GO:0017048 Rho GTPase binding(GO:0017048)
0.1 1.4 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.1 0.5 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.1 1.1 GO:0008146 sulfotransferase activity(GO:0008146)
0.1 0.2 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.1 0.9 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.1 2.1 GO:0045735 nutrient reservoir activity(GO:0045735)
0.1 0.5 GO:0043495 protein anchor(GO:0043495)
0.1 0.4 GO:0002161 aminoacyl-tRNA editing activity(GO:0002161)
0.1 0.2 GO:0009973 adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741)
0.1 0.3 GO:0016464 chloroplast protein-transporting ATPase activity(GO:0016464)
0.1 0.2 GO:0004020 adenylylsulfate kinase activity(GO:0004020)
0.1 0.2 GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0033764)
0.1 0.9 GO:0031418 L-ascorbic acid binding(GO:0031418)
0.1 0.5 GO:0004526 ribonuclease P activity(GO:0004526)
0.1 0.3 GO:0016676 cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)
0.1 0.5 GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity(GO:0003860)
0.1 0.2 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 2.9 GO:0004180 carboxypeptidase activity(GO:0004180)
0.0 0.2 GO:0008493 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.0 0.6 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.0 0.3 GO:0008239 dipeptidyl-peptidase activity(GO:0008239)
0.0 0.4 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.0 0.2 GO:0003680 AT DNA binding(GO:0003680)
0.0 0.6 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.0 0.4 GO:0004161 dimethylallyltranstransferase activity(GO:0004161)
0.0 1.8 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.2 GO:0070182 DNA polymerase binding(GO:0070182)
0.0 0.5 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.0 0.2 GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity(GO:0047334)
0.0 0.2 GO:0003919 FMN adenylyltransferase activity(GO:0003919)
0.0 0.3 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.0 0.7 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.0 0.8 GO:0008266 poly(U) RNA binding(GO:0008266)
0.0 0.3 GO:0001671 ATPase activator activity(GO:0001671)
0.0 2.2 GO:0043621 protein self-association(GO:0043621)
0.0 0.0 GO:0015665 alcohol transmembrane transporter activity(GO:0015665)
0.0 0.3 GO:0003968 RNA-directed RNA polymerase activity(GO:0003968)
0.0 0.1 GO:0004477 methenyltetrahydrofolate cyclohydrolase activity(GO:0004477) methylenetetrahydrofolate dehydrogenase (NADP+) activity(GO:0004488)
0.0 0.3 GO:0004345 glucose-6-phosphate dehydrogenase activity(GO:0004345)
0.0 0.7 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.0 0.3 GO:0015172 acidic amino acid transmembrane transporter activity(GO:0015172)
0.0 1.5 GO:0016759 cellulose synthase activity(GO:0016759)
0.0 0.1 GO:0005458 GDP-mannose transmembrane transporter activity(GO:0005458)
0.0 0.7 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.0 0.1 GO:0052740 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.0 0.1 GO:0004046 aminoacylase activity(GO:0004046)
0.0 10.3 GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981)
0.0 0.2 GO:0043138 3'-5' DNA helicase activity(GO:0043138)
0.0 0.4 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)
0.0 0.5 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.2 GO:0017108 5'-flap endonuclease activity(GO:0017108)
0.0 1.0 GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor(GO:0016655)
0.0 3.7 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.4 GO:0008061 chitin binding(GO:0008061)
0.0 1.5 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.0 0.3 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.0 0.1 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.0 0.3 GO:0004022 alcohol dehydrogenase (NAD) activity(GO:0004022)
0.0 1.1 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.3 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.0 0.6 GO:0008143 poly(A) binding(GO:0008143)
0.0 1.5 GO:0030247 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)
0.0 0.4 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.2 GO:0051117 ATPase binding(GO:0051117)
0.0 0.1 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.0 0.5 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.2 GO:0032977 membrane insertase activity(GO:0032977)
0.0 0.2 GO:0009378 four-way junction helicase activity(GO:0009378)
0.0 0.2 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.0 0.2 GO:0030151 molybdenum ion binding(GO:0030151)
0.0 0.1 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.0 0.2 GO:0002094 polyprenyltransferase activity(GO:0002094)
0.0 0.2 GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713)
0.0 0.2 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.0 0.1 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.0 0.4 GO:0030599 pectinesterase activity(GO:0030599)
0.0 0.0 GO:0015198 peptide transporter activity(GO:0015197) oligopeptide transporter activity(GO:0015198)
0.0 0.3 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 0.3 GO:0016872 intramolecular lyase activity(GO:0016872)
0.0 0.1 GO:0016174 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 0.2 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.0 1.1 GO:0005484 SNAP receptor activity(GO:0005484)
0.0 1.3 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.5 GO:0008810 cellulase activity(GO:0008810)
0.0 0.2 GO:0043539 protein serine/threonine kinase activator activity(GO:0043539)
0.0 0.5 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 1.1 GO:0051015 actin filament binding(GO:0051015)
0.0 2.9 GO:0043531 ADP binding(GO:0043531)
0.0 0.2 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.0 0.3 GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer(GO:0046912)
0.0 0.1 GO:0002151 G-quadruplex RNA binding(GO:0002151)
0.0 0.4 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.0 0.2 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.3 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.0 0.1 GO:0022842 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.0 0.2 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.0 0.1 GO:0010436 carotenoid dioxygenase activity(GO:0010436)
0.0 0.2 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 0.2 GO:0004714 transmembrane receptor protein tyrosine kinase activity(GO:0004714)
0.0 0.7 GO:0005337 nucleoside transmembrane transporter activity(GO:0005337)
0.0 0.1 GO:0043015 gamma-tubulin binding(GO:0043015)
0.0 0.5 GO:0003678 DNA helicase activity(GO:0003678)
0.0 0.5 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.0 0.1 GO:0019825 oxygen binding(GO:0019825)
0.0 0.2 GO:0005375 copper ion transmembrane transporter activity(GO:0005375)
0.0 1.0 GO:0008017 microtubule binding(GO:0008017)
0.0 1.0 GO:0008134 transcription factor binding(GO:0008134)
0.0 0.6 GO:0003993 acid phosphatase activity(GO:0003993)
0.0 0.5 GO:0008483 transaminase activity(GO:0008483)
0.0 0.1 GO:0004567 beta-mannosidase activity(GO:0004567) mannosidase activity(GO:0015923)
0.0 0.1 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.0 0.1 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.0 0.1 GO:0004017 adenylate kinase activity(GO:0004017)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.1 PID IL8 CXCR1 PATHWAY IL8- and CXCR1-mediated signaling events
0.2 0.7 PID IL12 2PATHWAY IL12-mediated signaling events
0.2 2.1 PID ATR PATHWAY ATR signaling pathway
0.2 0.8 PID MYC REPRESS PATHWAY Validated targets of C-MYC transcriptional repression
0.1 0.8 SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES Genes related to the insulin receptor pathway
0.1 0.4 PID LYMPH ANGIOGENESIS PATHWAY VEGFR3 signaling in lymphatic endothelium
0.1 0.6 NABA MATRISOME ASSOCIATED Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors
0.1 0.4 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
0.1 0.6 PID AP1 PATHWAY AP-1 transcription factor network
0.1 0.6 PID E2F PATHWAY E2F transcription factor network
0.1 0.2 PID LYSOPHOSPHOLIPID PATHWAY LPA receptor mediated events
0.1 0.9 PID P53 DOWNSTREAM PATHWAY Direct p53 effectors
0.1 0.5 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.1 0.1 ST ERK1 ERK2 MAPK PATHWAY ERK1/ERK2 MAPK Pathway
0.0 0.2 PID HES HEY PATHWAY Notch-mediated HES/HEY network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 4.4 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
0.4 1.3 REACTOME PURINE METABOLISM Genes involved in Purine metabolism
0.4 2.1 REACTOME PHASE II CONJUGATION Genes involved in Phase II conjugation
0.4 2.7 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1
0.4 1.1 REACTOME SPRY REGULATION OF FGF SIGNALING Genes involved in Spry regulation of FGF signaling
0.3 0.8 REACTOME INTEGRATION OF ENERGY METABOLISM Genes involved in Integration of energy metabolism
0.2 0.5 REACTOME GLYCOSPHINGOLIPID METABOLISM Genes involved in Glycosphingolipid metabolism
0.2 0.6 REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES Genes involved in Recruitment of mitotic centrosome proteins and complexes
0.1 0.4 REACTOME REGULATION OF SIGNALING BY CBL Genes involved in Regulation of signaling by CBL
0.1 0.5 REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT Genes involved in SLC-mediated transmembrane transport
0.1 0.4 REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES Genes involved in Antiviral mechanism by IFN-stimulated genes
0.1 0.4 REACTOME MHC CLASS II ANTIGEN PRESENTATION Genes involved in MHC class II antigen presentation
0.1 0.1 REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA Genes involved in Processing of Capped Intron-Containing Pre-mRNA
0.1 0.5 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.1 0.2 REACTOME INTRINSIC PATHWAY FOR APOPTOSIS Genes involved in Intrinsic Pathway for Apoptosis
0.1 0.4 REACTOME GENERIC TRANSCRIPTION PATHWAY Genes involved in Generic Transcription Pathway
0.0 0.3 REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND Genes involved in Removal of the Flap Intermediate from the C-strand
0.0 0.1 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport