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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G56840
Z-value: 1.63
Transcription factors associated with AT5G56840
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G56840
|
AT5G56840 | myb-like transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G56840 | arTal_v1_Chr5_+_22980638_22980638 | -0.42 | 2.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 3.25 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 2.99 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 2.98 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 2.95 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 2.88 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 2.80 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 2.79 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr5_+_625254_625254 Show fit | 2.74 |
AT5G02760.1
|
Protein phosphatase 2C family protein |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 2.51 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 2.49 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G56840
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 16.1 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.6 | 13.4 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.5 | 8.9 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 1.0 | 8.7 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.2 | 6.4 | GO:0042335 | cuticle development(GO:0042335) |
| 0.3 | 5.6 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.1 | 5.0 | GO:0019762 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.4 | 4.9 | GO:0010206 | photosystem II repair(GO:0010206) |
| 0.4 | 4.9 | GO:0032544 | plastid translation(GO:0032544) |
| 0.2 | 4.7 | GO:0006949 | syncytium formation(GO:0006949) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 42.5 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.0 | 37.3 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 17.2 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 16.0 | GO:0048046 | apoplast(GO:0048046) |
| 0.2 | 13.0 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.2 | 10.5 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 10.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 9.7 | GO:0009579 | thylakoid(GO:0009579) |
| 0.3 | 8.4 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.8 | 7.4 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 13.9 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.0 | 10.3 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.6 | 8.9 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.9 | 7.8 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 1.2 | 7.4 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.2 | 5.9 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.2 | 5.4 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.3 | 5.1 | GO:0010329 | auxin efflux transmembrane transporter activity(GO:0010329) |
| 0.1 | 4.6 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 4.0 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.1 | PID ATR PATHWAY | ATR signaling pathway |
| 0.4 | 1.1 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.1 | 0.9 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.2 | 0.8 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.8 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.2 | 0.7 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.6 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.6 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.6 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 4.4 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.4 | 2.7 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.4 | 2.1 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.4 | 1.3 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.4 | 1.1 | REACTOME SPRY REGULATION OF FGF SIGNALING | Genes involved in Spry regulation of FGF signaling |
| 0.3 | 0.8 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.2 | 0.6 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.2 | 0.5 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 0.5 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.1 | 0.5 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |