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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G56110
Z-value: 0.96
Transcription factors associated with AT5G56110
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G56110
|
AT5G56110 | myb domain protein 103 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB80 | arTal_v1_Chr5_+_22719191_22719191 | 0.38 | 4.9e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 1.58 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_4488476_4488476 Show fit | 1.23 |
AT5G13930.1
|
Chalcone and stilbene synthase family protein |
|
| arTal_v1_Chr2_-_9062093_9062093 Show fit | 1.19 |
AT2G21140.1
|
proline-rich protein 2 |
|
| arTal_v1_Chr3_-_19643276_19643282 Show fit | 1.15 |
AT3G52970.1
AT3G52970.2 |
cytochrome P450, family 76, subfamily G, polypeptide 1 |
|
| arTal_v1_Chr1_+_175706_175706 Show fit | 1.14 |
AT1G01480.1
|
1-amino-cyclopropane-1-carboxylate synthase 2 |
|
| arTal_v1_Chr1_+_176141_176141 Show fit | 1.14 |
AT1G01480.2
|
1-amino-cyclopropane-1-carboxylate synthase 2 |
|
| arTal_v1_Chr1_+_10537648_10537648 Show fit | 1.12 |
AT1G30040.2
|
gibberellin 2-oxidase |
|
| arTal_v1_Chr1_-_20385380_20385380 Show fit | 1.09 |
AT1G54570.1
|
Esterase/lipase/thioesterase family protein |
|
| arTal_v1_Chr4_+_14215473_14215473 Show fit | 1.08 |
AT4G28780.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_+_10537457_10537457 Show fit | 1.08 |
AT1G30040.1
|
gibberellin 2-oxidase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G56110
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.3 | GO:0009808 | lignin metabolic process(GO:0009808) |
| 0.1 | 3.1 | GO:0010252 | auxin homeostasis(GO:0010252) |
| 0.0 | 3.0 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.3 | 2.6 | GO:0016103 | diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487) |
| 0.1 | 2.6 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.1 | 2.5 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 2.5 | GO:0009553 | embryo sac development(GO:0009553) |
| 0.0 | 2.4 | GO:0006631 | fatty acid metabolic process(GO:0006631) |
| 0.4 | 2.2 | GO:0042218 | 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218) |
| 0.0 | 2.2 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 2.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.7 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 1.8 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 1.5 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 1.3 | GO:0005875 | microtubule associated complex(GO:0005875) |
| 0.0 | 1.1 | GO:0090406 | pollen tube(GO:0090406) |
| 0.2 | 0.9 | GO:0009331 | glycerol-3-phosphate dehydrogenase complex(GO:0009331) |
| 0.1 | 0.9 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.1 | 0.9 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 3.3 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.1 | 3.2 | GO:0003993 | acid phosphatase activity(GO:0003993) |
| 0.4 | 3.0 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.3 | 2.6 | GO:0045543 | gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634) |
| 0.1 | 2.6 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 2.5 | GO:0005504 | fatty acid binding(GO:0005504) |
| 0.0 | 2.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 2.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 2.3 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.1 | 2.0 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.6 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.0 | 0.3 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.2 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.1 | 0.2 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.1 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.1 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.0 | 0.1 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.0 | 0.6 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.1 | 0.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.3 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.2 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.2 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.0 | 0.1 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
| 0.0 | 0.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |