ISMARA results: AT5G54680

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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT5G54680

Z-value: 0.62

Transcription factors associated with AT5G54680

Gene Symbol	Gene ID	Gene Info
AT5G54680 TAIR	AT5G54680	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
ILR3	arTal_v1_Chr5_+_22216934_22216934	-0.87	2.1e-09	Click!

Activity profile of AT5G54680 motif

Sorted Z-values of AT5G54680 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr5_+_24167996_24168072 Show fit	2.60	AT5G60020.1 AT5G60020.2	LAC17 TAIR Show fit	laccase 17
arTal_v1_Chr5_+_24168245_24168245 Show fit	2.01	AT5G60020.3	LAC17 TAIR Show fit	laccase 17
arTal_v1_Chr4_-_10316886_10316886 Show fit	1.97	AT4G18780.1	IRX1 TAIR Show fit	cellulose synthase family protein
arTal_v1_Chr5_+_17714390_17714390 Show fit	1.68	AT5G44030.2 AT5G44030.1	CESA4 TAIR Show fit	cellulose synthase A4
arTal_v1_Chr5_-_5741500_5741500 Show fit	1.62	AT5G17420.1	IRX3 TAIR Show fit	Cellulose synthase family protein
arTal_v1_Chr5_+_25050679_25050679 Show fit	1.39	AT5G62380.2	NAC101 TAIR Show fit	NAC-domain protein 101
arTal_v1_Chr5_-_24422274_24422274 Show fit	1.31	AT5G60720.1	AT5G60720 TAIR Show fit	electron transporter, putative (Protein of unknown function, DUF547)
arTal_v1_Chr3_+_6744377_6744377 Show fit	1.31	AT3G19450.1	ATCAD4 TAIR Show fit	GroES-like zinc-binding alcohol dehydrogenase family protein
arTal_v1_Chr5_-_19838235_19838235 Show fit	1.27	AT5G48930.1	HCT TAIR Show fit	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
arTal_v1_Chr5_+_25050152_25050152 Show fit	1.25	AT5G62380.1	NAC101 TAIR Show fit	NAC-domain protein 101

Showing 1 to 10 of 23 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G54680

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.2	GO:0009809	lignin biosynthetic process(GO:0009809)
0.1	2.8	GO:0009833	plant-type primary cell wall biogenesis(GO:0009833)
0.9	2.6	GO:0090058	metaxylem development(GO:0090058)
0.2	2.5	GO:0010417	glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.5	2.0	GO:0010116	positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.3	1.6	GO:0010395	rhamnogalacturonan I metabolic process(GO:0010395)
0.1	1.3	GO:0009963	positive regulation of flavonoid biosynthetic process(GO:0009963)
0.1	1.0	GO:0052324	plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.1	0.9	GO:0010192	mucilage biosynthetic process(GO:0010192)
0.2	0.6	GO:0009805	coumarin biosynthetic process(GO:0009805)

Showing 1 to 10 of 11 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	4.7	GO:0005802	trans-Golgi network(GO:0005802)
0.2	2.6	GO:0009531	secondary cell wall(GO:0009531)
0.4	1.6	GO:0010330	cellulose synthase complex(GO:0010330)
0.0	1.1	GO:0000139	Golgi membrane(GO:0000139)

Showing 1 to 4 of 4 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	6.4	GO:0016760	cellulose synthase (UDP-forming) activity(GO:0016760)
0.2	4.6	GO:0052716	hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0	2.6	GO:0042803	protein homodimerization activity(GO:0042803)
0.3	1.4	GO:0047517	1,4-beta-D-xylan synthase activity(GO:0047517)
0.3	1.3	GO:0050734	hydroxycinnamoyltransferase activity(GO:0050734)
0.1	1.3	GO:0052747	sinapyl alcohol dehydrogenase activity(GO:0052747)
0.5	1.1	GO:0080116	glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.2	0.6	GO:0046409	p-coumarate 3-hydroxylase activity(GO:0046409)

Showing 1 to 8 of 8 entries

Results for AT5G54680

Z-value: 0.62

Transcription factors associated with AT5G54680

Activity-expression correlation:

Activity profile of AT5G54680 motif

Sorted Z-values of AT5G54680 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G54680

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: