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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT5G54680

Z-value: 0.62

Transcription factors associated with AT5G54680

Gene Symbol Gene ID Gene Info
AT5G54680 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ILR3arTal_v1_Chr5_+_22216934_22216934-0.872.1e-09Click!

Activity profile of AT5G54680 motif

Sorted Z-values of AT5G54680 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_+_24167996 2.60 AT5G60020.1
AT5G60020.2
laccase 17
Chr5_+_24168245 2.01 AT5G60020.3
laccase 17
Chr4_-_10316886 1.97 AT4G18780.1
cellulose synthase family protein
Chr5_+_17714390 1.68 AT5G44030.2
AT5G44030.1
cellulose synthase A4
Chr5_-_5741500 1.62 AT5G17420.1
Cellulose synthase family protein
Chr5_+_25050679 1.39 AT5G62380.2
NAC-domain protein 101
Chr5_-_24422274 1.31 AT5G60720.1
electron transporter, putative (Protein of unknown function, DUF547)
Chr3_+_6744377 1.31 AT3G19450.1
GroES-like zinc-binding alcohol dehydrogenase family protein
Chr5_-_19838235 1.27 AT5G48930.1
hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
Chr5_+_25050152 1.25 AT5G62380.1
NAC-domain protein 101
Chr2_-_15589369 1.14 AT2G37090.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr3_-_8217080 1.13 AT3G23090.1
AT3G23090.2
AT3G23090.4
AT3G23090.3
TPX2 (targeting protein for Xklp2) protein family
Chr5_+_17715687 1.10 AT5G44030.3
cellulose synthase A4
Chr4_-_16063070 1.08 AT4G33330.2
AT4G33330.1
AT4G33330.5
AT4G33330.3
AT4G33330.4
plant glycogenin-like starch initiation protein 3
Chr5_+_5084524 1.01 AT5G15630.1
AT5G15630.2
AT5G15630.3
AT5G15630.4
AT5G15630.5
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Chr1_+_23337167 0.86 AT1G62990.1
homeobox knotted-like protein
Chr3_-_8216305 0.65 AT3G23090.5
TPX2 (targeting protein for Xklp2) protein family
Chr2_-_17060652 0.59 AT2G40890.1
cytochrome P450, family 98, subfamily A, polypeptide 3
Chr3_-_2578276 0.46 AT3G08500.1
myb domain protein 83
Chr1_-_9510066 0.36 AT1G27380.2
ROP-interactive CRIB motif-containing protein 2
Chr1_-_9510263 0.33 AT1G27380.1
AT1G27380.3
AT1G27380.4
ROP-interactive CRIB motif-containing protein 2
Chr1_-_9531489 0.25 AT1G27440.1
Exostosin family protein
Chr5_-_4065075 0.10 AT5G12870.1
myb domain protein 46

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G54680

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 2.6 GO:0090058 metaxylem development(GO:0090058)
0.5 2.0 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.3 1.6 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.2 2.5 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.2 0.6 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 2.8 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.1 1.3 GO:0009963 positive regulation of flavonoid biosynthetic process(GO:0009963)
0.1 1.0 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.1 0.9 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.0 3.2 GO:0009809 lignin biosynthetic process(GO:0009809)
0.0 0.2 GO:2000652 regulation of secondary cell wall biogenesis(GO:2000652)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.6 GO:0010330 cellulose synthase complex(GO:0010330)
0.2 2.6 GO:0009531 secondary cell wall(GO:0009531)
0.0 4.7 GO:0005802 trans-Golgi network(GO:0005802)
0.0 1.1 GO:0000139 Golgi membrane(GO:0000139)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.1 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.3 1.4 GO:0047517 1,4-beta-D-xylan synthase activity(GO:0047517)
0.3 1.3 GO:0050734 hydroxycinnamoyltransferase activity(GO:0050734)
0.2 4.6 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.2 0.6 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.2 6.4 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.1 1.3 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.0 2.6 GO:0042803 protein homodimerization activity(GO:0042803)