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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G54230
Z-value: 1.46
Transcription factors associated with AT5G54230
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G54230
|
AT5G54230 | myb domain protein 49 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB49 | arTal_v1_Chr5_-_22018061_22018061 | 0.83 | 4.9e-08 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 7.28 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr3_-_8007836_8007836 Show fit | 6.34 |
AT3G22600.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 6.15 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 6.13 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr3_-_2849686_2849686 Show fit | 5.73 |
AT3G09270.1
|
glutathione S-transferase TAU 8 |
|
| arTal_v1_Chr5_-_17166032_17166032 Show fit | 5.53 |
AT5G42800.1
|
dihydroflavonol 4-reductase |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 5.44 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr5_-_15859911_15859911 Show fit | 5.40 |
AT5G39610.1
|
NAC domain containing protein 6 |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 5.28 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr1_+_10892445_10892445 Show fit | 5.25 |
AT1G30700.1
|
FAD-binding Berberine family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G54230
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 30.9 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 20.3 | GO:0071453 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) |
| 0.4 | 18.1 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 14.3 | GO:0016311 | dephosphorylation(GO:0016311) |
| 0.2 | 13.8 | GO:0009615 | response to virus(GO:0009615) |
| 0.3 | 13.4 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.3 | 12.2 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.1 | 10.7 | GO:0006511 | ubiquitin-dependent protein catabolic process(GO:0006511) |
| 2.0 | 10.2 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.9 | 9.7 | GO:0010120 | camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 20.5 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.1 | 11.9 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.1 | 11.9 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 11.7 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 9.6 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.6 | 9.3 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.2 | 9.2 | GO:0090406 | pollen tube(GO:0090406) |
| 0.5 | 9.1 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.4 | 8.5 | GO:0005771 | multivesicular body(GO:0005771) |
| 0.3 | 8.1 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 31.3 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 0.1 | 30.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 23.3 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.2 | 20.7 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 16.4 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.9 | 10.1 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.2 | 9.9 | GO:0017137 | Rab GTPase binding(GO:0017137) |
| 0.0 | 9.9 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.7 | 9.7 | GO:0004709 | MAP kinase kinase kinase activity(GO:0004709) |
| 3.1 | 9.4 | GO:0052626 | 4-aminobenzoate amino acid synthetase activity(GO:0052625) benzoate amino acid synthetase activity(GO:0052626) vanillate amino acid synthetase activity(GO:0052627) 4-hydroxybenzoate amino acid synthetase activity(GO:0052628) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 3.7 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 1.0 | 2.9 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.5 | 2.8 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.6 | 2.5 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
| 0.5 | 2.5 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.6 | 2.3 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
| 0.7 | 2.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 1.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 1.1 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.4 | 0.9 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 3.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.3 | 3.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.7 | 2.7 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.3 | 2.7 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 0.5 | 2.4 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.1 | 2.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.7 | 2.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.3 | 1.9 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.4 | 1.8 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.6 | 1.7 | REACTOME TCR SIGNALING | Genes involved in TCR signaling |