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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G52660
Z-value: 0.93
Transcription factors associated with AT5G52660
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G52660
|
AT5G52660 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G52660 | arTal_v1_Chr5_-_21362160_21362273 | 0.38 | 4.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 1.96 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr1_-_5133860_5133860 Show fit | 1.58 |
AT1G14880.1
|
PLANT CADMIUM RESISTANCE 1 |
|
| arTal_v1_Chr3_+_11033665_11033665 Show fit | 1.57 |
AT3G29035.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr5_-_9247540_9247540 Show fit | 1.52 |
AT5G26340.1
|
Major facilitator superfamily protein |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 1.44 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr2_-_11295918_11295918 Show fit | 1.41 |
AT2G26560.1
|
phospholipase A 2A |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 1.40 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr5_-_7828724_7828724 Show fit | 1.35 |
AT5G23240.1
|
DNAJ heat shock N-terminal domain-containing protein |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 1.34 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr1_-_3756998_3756998 Show fit | 1.33 |
AT1G11210.1
|
cotton fiber protein, putative (DUF761) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G52660
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.6 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.0 | 6.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.6 | 3.0 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.2 | 2.2 | GO:0001676 | long-chain fatty acid metabolic process(GO:0001676) |
| 0.2 | 1.9 | GO:0006878 | cellular copper ion homeostasis(GO:0006878) |
| 0.1 | 1.9 | GO:0010120 | camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317) |
| 0.0 | 1.9 | GO:0009734 | auxin-activated signaling pathway(GO:0009734) |
| 0.4 | 1.8 | GO:1901336 | lactone metabolic process(GO:1901334) lactone biosynthetic process(GO:1901336) strigolactone metabolic process(GO:1901600) strigolactone biosynthetic process(GO:1901601) |
| 0.2 | 1.8 | GO:0045836 | positive regulation of meiotic nuclear division(GO:0045836) |
| 0.1 | 1.8 | GO:0015749 | monosaccharide transport(GO:0015749) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.6 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 3.2 | GO:0016604 | nuclear body(GO:0016604) |
| 0.0 | 2.2 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 1.6 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.1 | 1.4 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.0 | 1.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 1.2 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.0 | 1.1 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 1.0 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.0 | 1.0 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.9 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.0 | 3.6 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.0 | 3.5 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.0 | 2.7 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.1 | 2.1 | GO:0016597 | amino acid binding(GO:0016597) |
| 0.0 | 2.0 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 1.9 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.5 | 1.8 | GO:0052578 | alpha-farnesene synthase activity(GO:0052578) |
| 0.3 | 1.5 | GO:0005355 | glucose transmembrane transporter activity(GO:0005355) |
| 0.4 | 1.4 | GO:0003852 | 2-isopropylmalate synthase activity(GO:0003852) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.2 | 1.2 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 1.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.3 | 0.8 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.7 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.1 | 0.4 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.1 | 0.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.0 | 0.2 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.0 | 0.1 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.4 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.1 | 1.1 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.3 | 0.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.5 | REACTOME METABOLISM OF RNA | Genes involved in Metabolism of RNA |
| 0.1 | 0.4 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.1 | 0.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.2 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.1 | 0.2 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.1 | 0.2 | REACTOME SIGNAL ATTENUATION | Genes involved in Signal attenuation |