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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G52020
Z-value: 1.18
Transcription factors associated with AT5G52020
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G52020
|
AT5G52020 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G52020 | arTal_v1_Chr5_-_21125065_21125065 | -0.16 | 4.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 6.67 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 6.49 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 6.47 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 6.16 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 6.05 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 6.04 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 5.98 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 5.93 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 5.85 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 5.85 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G52020
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 46.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 30.1 | GO:0015979 | photosynthesis(GO:0015979) |
| 2.3 | 29.5 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 1.6 | 28.9 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.3 | 22.0 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.4 | 21.8 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.9 | 17.2 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.3 | 16.3 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.5 | 13.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.4 | 11.4 | GO:0010025 | wax biosynthetic process(GO:0010025) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 113.1 | GO:0009579 | thylakoid(GO:0009579) |
| 0.5 | 75.5 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 74.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 52.3 | GO:0048046 | apoplast(GO:0048046) |
| 1.2 | 48.7 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 35.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 31.8 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.1 | 24.9 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.4 | 20.8 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 0.4 | 19.5 | GO:0031977 | thylakoid lumen(GO:0031977) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 34.9 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 1.9 | 26.0 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.3 | 21.9 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.8 | 20.9 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.6 | 20.0 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.6 | 18.0 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.1 | 17.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 2.2 | 13.0 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.5 | 13.0 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.5 | 12.0 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.1 | 24.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 1.2 | 4.9 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 1.9 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 1.5 | PID E2F PATHWAY | E2F transcription factor network |
| 0.7 | 1.4 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.5 | 1.4 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 1.4 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.4 | 1.3 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.1 | 0.7 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.1 | 0.7 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.0 | 23.7 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 1.7 | 5.0 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.2 | 3.8 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.2 | 2.6 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.2 | 2.2 | REACTOME M G1 TRANSITION | Genes involved in M/G1 Transition |
| 0.3 | 2.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.3 | 1.6 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.4 | 1.4 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.2 | 1.2 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.4 | 1.1 | REACTOME CELL CYCLE CHECKPOINTS | Genes involved in Cell Cycle Checkpoints |