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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G51990
Z-value: 2.21
Transcription factors associated with AT5G51990
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G51990
|
AT5G51990 | C-repeat-binding factor 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| CBF4 | arTal_v1_Chr5_-_21117860_21117860 | 0.16 | 4.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 12.21 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 10.57 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 10.44 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 10.23 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_8392825_8392825 Show fit | 10.02 |
AT4G14630.1
|
germin-like protein 9 |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 9.88 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 9.81 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 9.77 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 9.52 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 9.44 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G51990
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 128.6 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 51.9 | GO:0032446 | protein modification by small protein conjugation(GO:0032446) |
| 0.8 | 31.7 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.6 | 30.7 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.7 | 29.0 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 25.9 | GO:0000398 | mRNA splicing, via spliceosome(GO:0000398) |
| 0.2 | 25.4 | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process(GO:0043161) |
| 0.5 | 19.5 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 3.2 | 19.0 | GO:0009413 | response to flooding(GO:0009413) |
| 0.5 | 18.6 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 53.7 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.0 | 48.2 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 48.1 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.2 | 31.2 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.2 | 23.8 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.2 | 18.4 | GO:0016604 | nuclear body(GO:0016604) |
| 0.4 | 16.6 | GO:0005764 | lysosome(GO:0005764) |
| 0.2 | 16.4 | GO:0005681 | spliceosomal complex(GO:0005681) |
| 0.7 | 14.6 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.2 | 14.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 119.4 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 74.8 | GO:0001067 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.3 | 38.0 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 36.5 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.2 | 23.9 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 3.4 | 23.8 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 2.0 | 21.9 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.2 | 19.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.3 | 19.7 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 18.9 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 5.7 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 1.1 | 5.5 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.8 | 4.1 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.2 | 1.8 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.8 | 1.6 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
| 0.3 | 1.6 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.4 | 1.2 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.6 | 1.1 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.3 | 0.8 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.2 | 0.7 | PID MYC PATHWAY | C-MYC pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 7.2 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 1.3 | 5.1 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 1.0 | 4.2 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 1.0 | 4.1 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.4 | 4.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.4 | 3.9 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.7 | 3.5 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.5 | 3.0 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.7 | 2.9 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.7 | 2.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |