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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G50670
Z-value: 0.70
Transcription factors associated with AT5G50670
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G50670
|
AT5G50670 | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SPL13B | arTal_v1_Chr5_-_20617538_20617538 | -0.67 | 9.5e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 2.38 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 2.15 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr5_-_25343369_25343369 Show fit | 1.97 |
AT5G63180.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr5_-_21092410_21092410 Show fit | 1.67 |
AT5G51890.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_+_26767599_26767599 Show fit | 1.66 |
AT5G67070.1
|
ralf-like 34 |
|
| arTal_v1_Chr4_-_846792_846814 Show fit | 1.64 |
AT4G01950.1
AT4G01950.2 |
glycerol-3-phosphate acyltransferase 3 |
|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 1.63 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr5_+_21020014_21020014 Show fit | 1.62 |
AT5G51750.1
|
subtilase 1.3 |
|
| arTal_v1_Chr1_+_20614573_20614610 Show fit | 1.49 |
AT1G55260.1
AT1G55260.2 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_1293723_1293723 Show fit | 1.42 |
AT5G04530.1
|
3-ketoacyl-CoA synthase 19 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G50670
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 3.1 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.1 | 2.1 | GO:2000012 | regulation of auxin polar transport(GO:2000012) |
| 0.1 | 1.7 | GO:0046856 | phosphatidylinositol dephosphorylation(GO:0046856) |
| 0.0 | 1.7 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.0 | 1.7 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 1.6 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 1.6 | GO:0009750 | response to fructose(GO:0009750) |
| 0.1 | 1.5 | GO:0044030 | regulation of DNA methylation(GO:0044030) |
| 0.1 | 1.5 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.9 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 4.7 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 4.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 1.2 | GO:0005770 | late endosome(GO:0005770) |
| 0.2 | 0.9 | GO:0009330 | DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330) |
| 0.1 | 0.9 | GO:0009531 | secondary cell wall(GO:0009531) |
| 0.0 | 0.9 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.2 | 0.8 | GO:0009331 | glycerol-3-phosphate dehydrogenase complex(GO:0009331) |
| 0.0 | 0.8 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.1 | 0.7 | GO:0045298 | tubulin complex(GO:0045298) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.9 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.0 | 2.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.5 | 2.0 | GO:0052578 | alpha-farnesene synthase activity(GO:0052578) |
| 0.2 | 1.9 | GO:0009979 | 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979) |
| 0.1 | 1.7 | GO:0034485 | phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485) |
| 0.0 | 1.7 | GO:0005179 | hormone activity(GO:0005179) |
| 0.2 | 1.6 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.3 | 1.5 | GO:0031957 | very long-chain fatty acid-CoA ligase activity(GO:0031957) |
| 0.1 | 1.4 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 1.4 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.1 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.2 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.0 | 0.1 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |