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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G47390
Z-value: 0.49
Transcription factors associated with AT5G47390
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G47390
|
AT5G47390 | myb-like transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G47390 | arTal_v1_Chr5_+_19226769_19226769 | -0.25 | 1.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 0.64 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 0.63 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr1_-_10475969_10475969 Show fit | 0.60 |
AT1G29920.1
|
chlorophyll A/B-binding protein 2 |
|
| arTal_v1_Chr1_-_10473502_10473502 Show fit | 0.56 |
AT1G29910.1
|
chlorophyll A/B binding protein 3 |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 0.56 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr5_-_15382071_15382071 Show fit | 0.56 |
AT5G38420.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr2_-_1800472_1800472 Show fit | 0.55 |
AT2G05070.1
|
photosystem II light harvesting complex protein 2.2 |
|
| arTal_v1_Chr5_+_17712203_17712203 Show fit | 0.55 |
AT5G44020.1
|
HAD superfamily, subfamily IIIB acid phosphatase |
|
| arTal_v1_Chr1_-_7531108_7531108 Show fit | 0.55 |
AT1G21500.1
|
hypothetical protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 0.55 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G47390
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.0 | GO:0006412 | translation(GO:0006412) |
| 0.1 | 7.9 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.3 | 6.3 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 3.4 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.2 | 2.5 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 2.5 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.0 | 2.3 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 2.2 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 1.9 | GO:0032544 | plastid translation(GO:0032544) |
| 0.1 | 1.9 | GO:1901259 | chloroplast rRNA processing(GO:1901259) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 17.4 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 9.1 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.0 | 5.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 5.3 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.1 | 4.7 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 4.1 | GO:0009523 | photosystem II(GO:0009523) |
| 0.1 | 3.5 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 3.1 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 3.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 2.8 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.6 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 8.5 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.2 | 5.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 2.8 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.5 | 2.7 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.1 | 2.1 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 2.0 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.0 | 2.0 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 1.8 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.0 | 1.4 | GO:0004185 | serine-type carboxypeptidase activity(GO:0004185) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.7 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 1.0 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.3 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 0.3 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.0 | 0.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.2 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.0 | 0.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.0 | 0.2 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.0 | 0.1 | PID ARF 3PATHWAY | Arf1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.7 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.0 | 1.1 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.1 | 0.9 | REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS | Genes involved in Activation of ATR in response to replication stress |
| 0.1 | 0.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.4 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.1 | 0.3 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 0.3 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.1 | 0.3 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.1 | 0.3 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.0 | 0.3 | REACTOME PROTEIN FOLDING | Genes involved in Protein folding |