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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G47230
Z-value: 0.40
Transcription factors associated with AT5G47230
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G47230
|
AT5G47230 | ethylene responsive element binding factor 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF5 | arTal_v1_Chr5_+_19179881_19179881 | 0.03 | 8.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_5448611_5448726 Show fit | 0.54 |
AT1G15830.1
AT1G15830.3 |
hypothetical protein |
|
| arTal_v1_Chr4_-_18275017_18275216 Show fit | 0.48 |
AT4G39260.4
AT4G39260.3 AT4G39260.2 AT4G39260.1 |
cold, circadian rhythm, and RNA binding 1 |
|
| arTal_v1_Chr2_-_9767_9767 Show fit | 0.40 |
AT2G01023.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_5448060_5448060 Show fit | 0.40 |
AT1G15830.2
|
hypothetical protein |
|
| arTal_v1_Chr3_-_8902835_8902835 Show fit | 0.39 |
AT3G24480.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr1_+_23953099_23953099 Show fit | 0.37 |
AT1G64500.1
|
Glutaredoxin family protein |
|
| arTal_v1_Chr3_+_18634546_18634546 Show fit | 0.37 |
AT3G50260.1
|
cooperatively regulated by ethylene and jasmonate 1 |
|
| arTal_v1_Chr4_+_7758275_7758275 Show fit | 0.33 |
AT4G13340.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr5_+_3253122_3253122 Show fit | 0.32 |
AT5G10340.1
|
F-box family protein |
|
| arTal_v1_Chr4_+_9759203_9759203 Show fit | 0.28 |
AT4G17500.1
|
ethylene responsive element binding factor 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G47230
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0061572 | actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572) |
| 0.0 | 0.3 | GO:0031118 | rRNA pseudouridine synthesis(GO:0031118) |
| 0.1 | 0.2 | GO:0051973 | positive regulation of telomerase activity(GO:0051973) |
| 0.0 | 0.2 | GO:0019218 | regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030) |
| 0.0 | 0.2 | GO:0072334 | UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334) |
| 0.0 | 0.2 | GO:0009864 | induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864) |
| 0.0 | 0.2 | GO:0016584 | nucleosome positioning(GO:0016584) |
| 0.0 | 0.1 | GO:0010501 | RNA secondary structure unwinding(GO:0010501) |
| 0.0 | 0.1 | GO:0097054 | L-glutamate biosynthetic process(GO:0097054) |
| 0.0 | 0.1 | GO:0006386 | termination of RNA polymerase III transcription(GO:0006386) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0005884 | actin filament(GO:0005884) |
| 0.0 | 0.3 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.0 | 0.2 | GO:0072588 | box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588) |
| 0.0 | 0.1 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.0 | 0.0 | GO:0009514 | glyoxysome(GO:0009514) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.7 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.1 | 0.5 | GO:0016621 | cinnamoyl-CoA reductase activity(GO:0016621) |
| 0.1 | 0.3 | GO:1901982 | disaccharide binding(GO:0048030) maltose binding(GO:1901982) |
| 0.1 | 0.2 | GO:0034513 | box H/ACA snoRNA binding(GO:0034513) |
| 0.0 | 0.2 | GO:0005460 | UDP-glucose transmembrane transporter activity(GO:0005460) |
| 0.0 | 0.1 | GO:0015930 | glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181) |
| 0.0 | 0.1 | GO:0004751 | ribose-5-phosphate isomerase activity(GO:0004751) |
| 0.0 | 0.1 | GO:0019166 | trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166) |
| 0.0 | 0.1 | GO:0016426 | tRNA (adenine) methyltransferase activity(GO:0016426) |
| 0.0 | 0.1 | GO:0031492 | nucleosomal DNA binding(GO:0031492) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |