Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT5G47220
Z-value: 0.74
Transcription factors associated with AT5G47220
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G47220
|
AT5G47220 | ethylene responsive element binding factor 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF2 | arTal_v1_Chr5_-_19172956_19172956 | 0.80 | 2.5e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_18634546_18634546 Show fit | 3.66 |
AT3G50260.1
|
cooperatively regulated by ethylene and jasmonate 1 |
|
| arTal_v1_Chr1_+_6100964_6101015 Show fit | 3.24 |
AT1G17745.1
AT1G17745.2 |
D-3-phosphoglycerate dehydrogenase |
|
| arTal_v1_Chr1_-_5645443_5645443 Show fit | 3.24 |
AT1G16510.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr1_+_1469541_1469541 Show fit | 3.14 |
AT1G05100.1
|
mitogen-activated protein kinase kinase kinase 18 |
|
| arTal_v1_Chr4_+_17440177_17440177 Show fit | 2.96 |
AT4G36990.1
|
heat shock factor 4 |
|
| arTal_v1_Chr1_-_17706460_17706460 Show fit | 2.90 |
AT1G48000.1
|
myb domain protein 112 |
|
| arTal_v1_Chr3_-_1776840_1776840 Show fit | 2.88 |
AT3G05937.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_8850111_8850111 Show fit | 2.78 |
AT2G20560.1
|
DNAJ heat shock family protein |
|
| arTal_v1_Chr4_+_7239200_7239200 Show fit | 2.77 |
AT4G12080.1
|
AT-hook motif nuclear-localized protein 1 |
|
| arTal_v1_Chr1_-_23019494_23019494 Show fit | 2.75 |
AT1G62300.1
|
WRKY family transcription factor |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G47220
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.7 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
| 0.4 | 4.3 | GO:0031204 | posttranslational protein targeting to membrane, translocation(GO:0031204) |
| 0.1 | 3.7 | GO:0010941 | regulation of cell death(GO:0010941) |
| 0.1 | 3.3 | GO:0098869 | cellular oxidant detoxification(GO:0098869) |
| 0.6 | 3.2 | GO:0006564 | L-serine biosynthetic process(GO:0006564) |
| 0.8 | 3.1 | GO:1902457 | negative regulation of stomatal opening(GO:1902457) |
| 0.0 | 3.0 | GO:0009414 | response to water deprivation(GO:0009414) |
| 0.7 | 2.8 | GO:0080029 | cellular response to boron-containing substance levels(GO:0080029) |
| 0.3 | 2.6 | GO:0006121 | mitochondrial electron transport, succinate to ubiquinone(GO:0006121) |
| 0.1 | 2.5 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 4.3 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.0 | 3.6 | GO:0042025 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.0 | 2.8 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.2 | 2.6 | GO:0045273 | respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281) |
| 0.0 | 2.6 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.1 | 2.4 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 2.3 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.0 | 2.2 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.7 | 2.0 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.2 | 2.0 | GO:0070062 | extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 5.7 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.4 | 4.3 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
| 0.7 | 3.4 | GO:0004165 | dodecenoyl-CoA delta-isomerase activity(GO:0004165) |
| 0.8 | 3.2 | GO:0004617 | phosphoglycerate dehydrogenase activity(GO:0004617) |
| 0.2 | 3.1 | GO:0004709 | MAP kinase kinase kinase activity(GO:0004709) |
| 0.6 | 2.8 | GO:0003680 | AT DNA binding(GO:0003680) |
| 0.0 | 2.7 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
| 0.4 | 2.6 | GO:0008177 | succinate dehydrogenase (ubiquinone) activity(GO:0008177) |
| 0.1 | 2.5 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 0.5 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.1 | 0.2 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |