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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G46830
Z-value: 0.72
Transcription factors associated with AT5G46830
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G46830
|
AT5G46830 | calcium-binding transcription factor NIG1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NIG1 | arTal_v1_Chr5_+_19002564_19002564 | 0.11 | 5.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 1.87 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr1_+_27538190_27538190 Show fit | 1.61 |
AT1G73220.1
|
organic cation/carnitine transporter1 |
|
| arTal_v1_Chr5_+_1153740_1153740 Show fit | 1.61 |
AT5G04200.1
|
metacaspase 9 |
|
| arTal_v1_Chr4_+_9407611_9407611 Show fit | 1.53 |
AT4G16740.4
AT4G16740.3 AT4G16740.1 |
terpene synthase 03 |
|
| arTal_v1_Chr3_+_5471735_5471735 Show fit | 1.49 |
AT3G16150.1
|
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 1.46 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 1.42 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr1_+_10537648_10537648 Show fit | 1.41 |
AT1G30040.2
|
gibberellin 2-oxidase |
|
| arTal_v1_Chr1_-_25662276_25662276 Show fit | 1.38 |
AT1G68450.1
|
VQ motif-containing protein |
|
| arTal_v1_Chr1_+_10537457_10537457 Show fit | 1.37 |
AT1G30040.1
|
gibberellin 2-oxidase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G46830
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.7 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 3.5 | GO:0016024 | CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341) |
| 0.1 | 3.4 | GO:0010252 | auxin homeostasis(GO:0010252) |
| 0.4 | 3.3 | GO:0016103 | diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487) |
| 0.3 | 2.8 | GO:0045836 | positive regulation of meiotic nuclear division(GO:0045836) |
| 0.1 | 2.8 | GO:0009083 | branched-chain amino acid catabolic process(GO:0009083) |
| 0.0 | 2.6 | GO:0070646 | protein modification by small protein removal(GO:0070646) |
| 0.6 | 2.5 | GO:0042759 | long-chain fatty acid biosynthetic process(GO:0042759) |
| 0.1 | 2.5 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.1 | 2.2 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.4 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 2.6 | GO:0005681 | spliceosomal complex(GO:0005681) |
| 0.0 | 2.5 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.4 | 2.2 | GO:0030062 | mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
| 0.0 | 2.0 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 1.8 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 1.8 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 1.7 | GO:0016592 | mediator complex(GO:0016592) |
| 0.0 | 1.7 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 1.6 | GO:0015629 | actin cytoskeleton(GO:0015629) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 6.4 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.0 | 3.6 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.9 | 3.5 | GO:0052578 | alpha-farnesene synthase activity(GO:0052578) |
| 0.4 | 3.5 | GO:0004366 | glycerol-3-phosphate O-acyltransferase activity(GO:0004366) |
| 0.1 | 3.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 3.5 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.4 | 3.2 | GO:0045543 | gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634) |
| 0.1 | 3.2 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.3 | 2.9 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.1 | 2.9 | GO:0010427 | abscisic acid binding(GO:0010427) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.4 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.4 | PID P73PATHWAY | p73 transcription factor network |
| 0.1 | 0.3 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 0.2 | PID MYC PATHWAY | C-MYC pathway |
| 0.1 | 0.2 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.2 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.0 | 0.1 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.9 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.1 | 0.4 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.1 | 0.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.3 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
| 0.1 | 0.2 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.1 | 0.2 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.0 | 0.2 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |