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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G45580
Z-value: 0.75
Transcription factors associated with AT5G45580
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G45580
|
AT5G45580 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G45580 | arTal_v1_Chr5_-_18483008_18483044 | 0.07 | 7.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 1.57 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 1.13 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr5_+_625254_625254 Show fit | 1.11 |
AT5G02760.1
|
Protein phosphatase 2C family protein |
|
| arTal_v1_Chr3_-_16448844_16448844 Show fit | 1.07 |
AT3G44990.1
|
xyloglucan endo-transglycosylase-related 8 |
|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 1.06 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 1.01 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 0.95 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 0.94 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr1_+_26141726_26141836 Show fit | 0.93 |
AT1G69530.2
AT1G69530.1 AT1G69530.3 AT1G69530.5 AT1G69530.4 |
expansin A1 |
|
| arTal_v1_Chr5_-_14562863_14562863 Show fit | 0.93 |
AT5G36910.1
|
thionin 2.2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G45580
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.4 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.4 | 4.0 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.1 | 3.6 | GO:0048825 | cotyledon development(GO:0048825) |
| 0.1 | 3.5 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 3.0 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.0 | 2.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 2.3 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 2.3 | GO:0009765 | photosynthesis, light harvesting(GO:0009765) |
| 0.1 | 2.2 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.0 | 2.2 | GO:0045454 | cell redox homeostasis(GO:0045454) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 26.0 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 20.3 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 6.1 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 5.5 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.0 | 4.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 3.5 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 2.5 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 0.2 | 2.4 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.2 | 1.5 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.2 | 1.4 | GO:0009533 | chloroplast stromal thylakoid(GO:0009533) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 3.4 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 3.2 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 2.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 2.3 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 2.3 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 2.2 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.3 | 1.9 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.2 | 1.9 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.2 | 1.7 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | PID E2F PATHWAY | E2F transcription factor network |
| 0.2 | 0.8 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.5 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.4 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.1 | 0.3 | PID NECTIN PATHWAY | Nectin adhesion pathway |
| 0.1 | 0.3 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.3 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 1.0 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.6 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.1 | 0.6 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.1 | 0.5 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.5 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.1 | 0.4 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.1 | 0.3 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
| 0.0 | 0.3 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |