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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G45300
Z-value: 2.17
Transcription factors associated with AT5G45300
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G45300
|
AT5G45300 | beta-amylase 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BMY2 | arTal_v1_Chr5_+_18353525_18353610 | 0.79 | 5.7e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 12.95 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr2_+_12600914_12601033 Show fit | 12.89 |
AT2G29350.2
AT2G29350.1 AT2G29350.3 |
senescence-associated gene 13 |
|
| arTal_v1_Chr2_+_10906460_10906460 Show fit | 12.73 |
AT2G25625.2
|
histone deacetylase-like protein |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 12.58 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 12.43 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr2_+_10906215_10906215 Show fit | 12.35 |
AT2G25625.1
|
histone deacetylase-like protein |
|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 12.04 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr1_-_1559917_1559917 Show fit | 11.91 |
AT1G05340.1
|
cysteine-rich TM module stress tolerance protein |
|
| arTal_v1_Chr1_-_24433165_24433165 Show fit | 11.86 |
AT1G65690.1
|
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
|
| arTal_v1_Chr5_-_17166032_17166032 Show fit | 11.33 |
AT5G42800.1
|
dihydroflavonol 4-reductase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G45300
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 29.1 | GO:0009615 | response to virus(GO:0009615) |
| 1.9 | 24.3 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.5 | 23.5 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.2 | 21.7 | GO:0006470 | protein dephosphorylation(GO:0006470) |
| 0.1 | 19.9 | GO:0009414 | response to water deprivation(GO:0009414) |
| 0.6 | 19.1 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.1 | 13.0 | GO:0006812 | cation transport(GO:0006812) |
| 2.5 | 12.6 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.2 | 12.6 | GO:0009734 | auxin-activated signaling pathway(GO:0009734) |
| 1.2 | 12.4 | GO:0016584 | nucleosome positioning(GO:0016584) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 213.9 | GO:0005634 | nucleus(GO:0005634) |
| 0.1 | 63.9 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.1 | 34.4 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 1.4 | 20.7 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.9 | 17.4 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.8 | 12.4 | GO:0000786 | nucleosome(GO:0000786) |
| 1.4 | 12.2 | GO:0045252 | oxoglutarate dehydrogenase complex(GO:0045252) |
| 0.0 | 11.6 | GO:0098791 | Golgi subcompartment(GO:0098791) |
| 1.6 | 11.3 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.2 | 11.0 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 53.5 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 1.3 | 23.3 | GO:0004022 | alcohol dehydrogenase (NAD) activity(GO:0004022) |
| 0.0 | 21.9 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.6 | 20.2 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.1 | 19.8 | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616) |
| 0.1 | 17.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 17.2 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.9 | 16.7 | GO:0016844 | strictosidine synthase activity(GO:0016844) |
| 3.8 | 15.2 | GO:0005432 | calcium:sodium antiporter activity(GO:0005432) |
| 0.0 | 15.0 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.9 | PID CDC42 PATHWAY | CDC42 signaling events |
| 0.3 | 2.2 | PID P73PATHWAY | p73 transcription factor network |
| 0.4 | 1.1 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.6 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.4 | 0.4 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 6.5 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.8 | 3.9 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.3 | 2.3 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.5 | 2.2 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.4 | 1.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 0.9 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| 0.1 | 0.7 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.2 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |