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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT5G45300

Z-value: 2.17

Transcription factors associated with AT5G45300

Gene Symbol Gene ID Gene Info
AT5G45300
AT5G45300 beta-amylase 2

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
BMY2arTal_v1_Chr5_+_18353525_183536100.795.7e-07Click!

Activity profile of AT5G45300 motif

Sorted Z-values of AT5G45300 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_+_18641563 12.95 AT2G45210.1
SAUR36
SAUR-like auxin-responsive protein family
Chr2_+_12600914 12.89 AT2G29350.2
AT2G29350.1
AT2G29350.3
SAG13
senescence-associated gene 13
Chr2_+_10906460 12.73 AT2G25625.2
AT2G25625
histone deacetylase-like protein
Chr3_+_5234457 12.58 AT3G15500.1
NAC3
NAC domain containing protein 3
Chr2_+_7845923 12.43 AT2G18050.2
AT2G18050.1
HIS1-3
histone H1-3
Chr2_+_10906215 12.35 AT2G25625.1
AT2G25625
histone deacetylase-like protein
Chr3_-_21189859 12.04 AT3G57260.1
AT3G57260.2
BGL2
beta-1,3-glucanase 2
Chr1_-_1559917 11.91 AT1G05340.1
AT1G05340
cysteine-rich TM module stress tolerance protein
Chr1_-_24433165 11.86 AT1G65690.1
AT1G65690
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr5_-_17166032 11.33 AT5G42800.1
DFR
dihydroflavonol 4-reductase
Chr3_-_4762457 10.71 AT3G14280.1
AT3G14280
LL-diaminopimelate aminotransferase
Chr1_-_19698482 10.57 AT1G52890.1
NAC019
NAC domain containing protein 19
Chr4_+_12461907 10.48 AT4G24000.1
CSLG2
cellulose synthase like G2
Chr1_+_3066674 10.37 AT1G09500.1
AT1G09500.2
AT1G09500.3
AT1G09500
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_+_19239305 10.35 AT3G51860.1
AT3G51860.2
CAX3
cation exchanger 3
Chr5_-_23896702 10.34 AT5G59220.2
HAI1
PP2C protein (Clade A protein phosphatases type 2C)
Chr4_-_7026224 10.32 AT4G11650.1
OSM34
osmotin 34
Chr4_+_10974456 10.22 AT4G20320.2
AT4G20320.4
AT4G20320.3
AT4G20320.1
AT4G20320.5
AT4G20320.6
AT4G20320
CTP synthase family protein
Chr5_-_23896939 10.14 AT5G59220.1
HAI1
PP2C protein (Clade A protein phosphatases type 2C)
Chr3_-_4657723 9.87 AT3G14060.1
AT3G14060
hypothetical protein
Chr3_-_1063103 9.79 AT3G04070.2
AT3G04070.1
NAC047
NAC domain containing protein 47
Chr2_-_19166949 9.61 AT2G46680.2
AT2G46680.1
HB-7
homeobox 7
Chr2_+_8097420 9.57 AT2G18690.2
AT2G18690.1
AT2G18690
transmembrane protein
Chr4_+_13653579 9.32 AT4G27260.1
WES1
Auxin-responsive GH3 family protein
Chr3_+_19089026 9.09 AT3G51440.1
AT3G51440
Calcium-dependent phosphotriesterase superfamily protein
Chr2_-_16014991 8.82 AT2G38240.1
AT2G38240
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr4_+_12463312 8.81 AT4G24000.2
CSLG2
cellulose synthase like G2
Chr4_+_10398857 8.77 AT4G18980.1
AtS40-3
AtS40-3
Chr1_+_23072222 8.66 AT1G62370.1
AT1G62370
RING/U-box superfamily protein
Chr2_+_12871984 8.52 AT2G30140.1
AT2G30140.2
UGT87A2
UDP-Glycosyltransferase superfamily protein
Chr1_+_3288087 8.37 AT1G10070.3
AT1G10070.2
AT1G10070.1
BCAT-2
branched-chain amino acid transaminase 2
Chr5_-_763322 8.36 AT5G03210.1
DIP2
E3 ubiquitin-protein ligase
Chr3_+_19086344 8.35 AT3G51430.1
AT3G51430.2
YLS2
Calcium-dependent phosphotriesterase superfamily protein
Chr4_+_7304323 8.06 AT4G12290.2
AT4G12290
Copper amine oxidase family protein
Chr2_-_9538963 8.03 AT2G22470.1
AGP2
arabinogalactan protein 2
Chr4_+_7303985 8.00 AT4G12290.1
AT4G12290
Copper amine oxidase family protein
Chr4_-_7686873 7.98 AT4G13250.2
AT4G13250.1
NYC1
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_-_2652535 7.88 AT5G08240.1
AT5G08240
transmembrane protein
Chr5_-_21265460 7.88 AT5G52390.1
AT5G52390
PAR1 protein
Chr5_-_5904380 7.61 AT5G17860.2
CAX7
calcium exchanger 7
Chr5_-_24836933 7.61 AT5G61820.1
AT5G61820.2
AT5G61820
stress up-regulated Nod 19 protein
Chr5_-_5904532 7.54 AT5G17860.1
CAX7
calcium exchanger 7
Chr1_+_8720309 7.52 AT1G24600.1
AT1G24600
hypothetical protein
Chr3_-_8119490 7.51 AT3G22910.1
AT3G22910
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
Chr5_+_20764096 7.45 AT5G51070.1
ERD1
Clp ATPase
Chr5_-_3405571 7.44 AT5G10770.1
AT5G10770
Eukaryotic aspartyl protease family protein
Chr3_+_18465318 7.44 AT3G49780.1
PSK4
phytosulfokine 4 precursor
Chr1_-_28318362 7.41 AT1G75450.1
AT1G75450.2
CKX5
cytokinin oxidase 5
Chr1_+_28291698 7.39 AT1G75390.1
AT1G75390.2
bZIP44
basic leucine-zipper 44
Chr2_-_17806073 7.36 AT2G42790.1
CSY3
citrate synthase 3
Chr5_-_763480 7.35 AT5G03210.2
DIP2
E3 ubiquitin-protein ligase
Chr5_-_19735489 7.34 AT5G48657.6
AT5G48657.5
AT5G48657.1
AT5G48657
defense protein-like protein
Chr1_-_17706460 7.30 AT1G48000.1
MYB112
myb domain protein 112
Chr2_+_17640546 7.17 AT2G42360.1
AT2G42360
RING/U-box superfamily protein
Chr5_-_19735669 7.13 AT5G48657.3
AT5G48657.2
AT5G48657.4
AT5G48657
defense protein-like protein
Chr3_+_512220 7.13 AT3G02480.1
AT3G02480
Late embryogenesis abundant protein (LEA) family protein
Chr5_-_18804056 6.97 AT5G46350.1
WRKY8
WRKY DNA-binding protein 8
Chr1_+_20617313 6.97 AT1G55265.1
AT1G55265
DUF538 family protein, putative (Protein of unknown function, DUF538)
Chr1_-_2282828 6.94 AT1G07430.1
HAI2
highly ABA-induced PP2C protein 2
Chr3_+_815550 6.89 AT3G03440.1
AT3G03440
ARM repeat superfamily protein
Chr2_-_7910040 6.72 AT2G18170.1
MPK7
MAP kinase 7
Chr1_+_3945584 6.71 AT1G11700.1
AT1G11700
senescence regulator (Protein of unknown function, DUF584)
Chr1_+_26038905 6.68 AT1G69260.1
AFP1
ABI five binding protein
Chr1_+_11774484 6.57 AT1G32560.1
AtLEA4-1
Late embryogenesis abundant protein, group 1 protein
Chr5_-_26096114 6.53 AT5G65300.1
AT5G65300
hypothetical protein
Chr3_-_829926 6.47 AT3G03480.1
CHAT
acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase
Chr2_-_243649 6.35 AT2G01540.1
AT2G01540
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr1_-_2305031 6.33 AT1G07500.1
AT1G07500
hypothetical protein
Chr5_+_20090648 6.25 AT5G49520.1
WRKY48
WRKY DNA-binding protein 48
Chr3_-_21303230 6.23 AT3G57540.1
AT3G57540
Remorin family protein
Chr5_+_18651265 6.23 AT5G45990.2
AT5G45990.1
AT5G45990
crooked neck protein, putative / cell cycle protein
Chr3_+_5243432 6.23 AT3G15510.1
NAC2
NAC domain containing protein 2
Chr1_-_23637577 6.22 AT1G63720.1
AT1G63720
hydroxyproline-rich glycoprotein family protein
Chr1_+_30135024 6.20 AT1G80110.1
PP2-B11
phloem protein 2-B11
Chr1_+_22198266 6.10 AT1G60190.1
PUB19
ARM repeat superfamily protein
Chr4_-_17559104 6.01 AT4G37310.1
CYP81H1
cytochrome P450, family 81, subfamily H, polypeptide 1
Chr5_-_4933620 6.00 AT5G15190.2
AT5G15190.1
AT5G15190
hypothetical protein
Chr3_-_11384145 5.98 AT3G29575.1
AT3G29575.4
AT3G29575.3
AFP3
ABI five binding protein 3
Chr4_+_15230008 5.93 AT4G31380.1
FLP1
flowering-promoting factor-like protein
Chr2_+_17639001 5.92 AT2G42350.1
AT2G42350
RING/U-box superfamily protein
Chr1_+_27462983 5.90 AT1G73000.1
PYL3
PYR1-like 3
Chr4_+_9385119 5.90 AT4G16670.2
AT4G16670.3
AT4G16670.1
AT4G16670
auxin canalization protein (DUF828)
Chr4_-_10714745 5.88 AT4G19700.1
RING
SBP (S-ribonuclease binding protein) family protein
Chr5_+_25908247 5.85 AT5G64810.1
WRKY51
WRKY DNA-binding protein 51
Chr1_+_21207537 5.84 AT1G56600.1
GolS2
galactinol synthase 2
Chr5_-_18506382 5.81 AT5G45630.1
AT5G45630
senescence regulator (Protein of unknown function, DUF584)
Chr2_-_852321 5.76 AT2G02930.1
GSTF3
glutathione S-transferase F3
Chr1_+_2025544 5.72 AT1G06620.1
AT1G06620.2
AT1G06620
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr2_+_6758430 5.68 AT2G15480.1
UGT73B5
UDP-glucosyl transferase 73B5
Chr1_-_9140439 5.65 AT1G26410.1
AT1G26410
FAD-binding Berberine family protein
Chr5_+_25322975 5.64 AT5G63130.2
AT5G63130.1
AT5G63130
Octicosapeptide/Phox/Bem1p family protein
Chr5_-_2090430 5.60 AT5G06760.1
LEA4-5
Late Embryogenesis Abundant 4-5
Chr1_+_5090809 5.52 AT1G14780.1
AT1G14780
MAC/Perforin domain-containing protein
Chr2_+_18698592 5.51 AT2G45360.1
AT2G45360
ankyrin repeat/KH domain protein (DUF1442)
Chr1_-_26481630 5.47 AT1G70300.1
KUP6
K+ uptake permease 6
Chr2_+_837801 5.44 AT2G02870.3
AT2G02870.1
AT2G02870.2
AT2G02870
Galactose oxidase/kelch repeat superfamily protein
Chr3_+_3442237 5.43 AT3G10985.1
SAG20
senescence associated gene 20
Chr2_-_16368570 5.33 AT2G39210.1
AT2G39210
Major facilitator superfamily protein
Chr1_-_28587927 5.26 AT1G76180.1
AT1G76180.2
ERD14
Dehydrin family protein
Chr1_-_3419691 5.24 AT1G10410.1
AT1G10410
CW14 protein (DUF1336)
Chr3_-_9464676 5.23 AT3G25870.1
AT3G25870
hypothetical protein
Chr2_+_19000180 5.23 AT2G46270.2
AT2G46270.1
AT2G46270.4
AT2G46270.3
GBF3
G-box binding factor 3
Chr1_-_8537780 5.21 AT1G24140.1
AT1G24140
Matrixin family protein
Chr3_-_1039603 5.20 AT3G04010.1
AT3G04010
O-Glycosyl hydrolases family 17 protein
Chr5_-_17534796 5.16 AT5G43650.1
AT5G43650.2
BHLH92
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_-_17041131 5.15 AT4G36010.2
AT4G36010
Pathogenesis-related thaumatin superfamily protein
Chr1_+_29099839 5.11 AT1G77450.1
NAC032
NAC domain containing protein 32
Chr4_-_17041326 5.10 AT4G36010.1
AT4G36010
Pathogenesis-related thaumatin superfamily protein
Chr1_-_26117955 5.05 AT1G69480.1
AT1G69480
EXS (ERD1/XPR1/SYG1) family protein
Chr1_+_29073840 5.03 AT1G77370.1
AT1G77370.2
AT1G77370
Glutaredoxin family protein
Chr1_-_4892332 5.02 AT1G14330.1
AT1G14330
Galactose oxidase/kelch repeat superfamily protein
Chr1_-_1547798 5.02 AT1G05300.2
AT1G05300.1
ZIP5
zinc transporter 5 precursor
Chr1_-_13365172 4.98 AT1G35910.1
TPPD
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_-_26117765 4.96 AT1G69480.2
AT1G69480
EXS (ERD1/XPR1/SYG1) family protein
Chr2_-_7919345 4.93 AT2G18193.1
AT2G18193
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_+_29815470 4.92 AT1G79270.1
AT1G79270.3
AT1G79270.2
AT1G79270.4
ECT8
evolutionarily conserved C-terminal region 8
Chr2_-_1379130 4.91 AT2G04100.1
AT2G04100.2
AT2G04100
MATE efflux family protein
Chr1_-_20563269 4.91 AT1G55110.2
AT1G55110.1
AT1G55110.3
IDD7
indeterminate(ID)-domain 7
Chr2_+_17909007 4.90 AT2G43060.1
IBH1
ILI1 binding bHLH 1
Chr4_+_13275200 4.90 AT4G26200.1
ACS7
1-amino-cyclopropane-1-carboxylate synthase 7
Chr4_-_16562931 4.89 AT4G34710.2
AT4G34710.1
ADC2
arginine decarboxylase 2
Chr1_-_2175038 4.89 AT1G07090.1
LSH6
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Chr5_+_20644525 4.85 AT5G50760.1
AT5G50760
SAUR-like auxin-responsive protein family
Chr5_+_16733663 4.83 AT5G41800.1
AT5G41800
Transmembrane amino acid transporter family protein
Chr5_+_21771811 4.83 AT5G53590.1
AT5G53590
SAUR-like auxin-responsive protein family
Chr5_+_332330 4.82 AT5G01850.2
AT5G01850.1
AT5G01850
Protein kinase superfamily protein
Chr1_-_29187932 4.81 AT1G77660.1
AT1G77660
Histone H3 K4-specific methyltransferase SET7/9 family protein
Chr1_+_7337819 4.79 AT1G21000.2
AT1G21000
PLATZ transcription factor family protein
Chr4_+_2816317 4.77 AT4G05530.1
IBR1
indole-3-butyric acid response 1
Chr5_+_20192159 4.76 AT5G49700.1
AT5G49700
Putative AT-hook DNA-binding family protein
Chr1_-_575085 4.72 AT1G02660.1
AT1G02660
alpha/beta-Hydrolases superfamily protein
Chr3_+_7906521 4.71 AT3G22370.1
AOX1A
alternative oxidase 1A
Chr5_+_7379187 4.71 AT5G22300.1
AT5G22300.2
NIT4
nitrilase 4
Chr5_-_19163918 4.71 AT5G47180.2
AT5G47180.1
AT5G47180
Plant VAMP (vesicle-associated membrane protein) family protein
Chr1_+_7337605 4.70 AT1G21000.1
AT1G21000
PLATZ transcription factor family protein
Chr1_-_9337759 4.69 AT1G26930.2
AT1G26930
Galactose oxidase/kelch repeat superfamily protein
Chr5_-_22030060 4.66 AT5G54250.2
AT5G54250.1
AT5G54250.4
AT5G54250.3
CNGC4
cyclic nucleotide-gated cation channel 4
Chr1_+_7496998 4.65 AT1G21410.1
AT1G21410.2
SKP2A
F-box/RNI-like superfamily protein
Chr5_+_19608490 4.65 AT5G48385.1
AT5G48385
FRIGIDA-like protein
Chr3_+_2003393 4.63 AT3G06490.1
MYB108
myb domain protein 108
Chr1_+_99865 4.63 AT1G01240.4
AT1G01240.2
AT1G01240.1
AT1G01240.3
AT1G01240.5
AT1G01240
transmembrane protein
Chr1_+_20210772 4.63 AT1G54130.1
RSH3
RELA/SPOT homolog 3
Chr5_+_26705785 4.62 AT5G66870.1
ASL1
ASYMMETRIC LEAVES 2-like 1
Chr2_+_6758681 4.62 AT2G15480.2
UGT73B5
UDP-glucosyl transferase 73B5
Chr3_+_8641181 4.59 AT3G23920.1
BAM1
beta-amylase 1
Chr5_-_16570275 4.57 AT5G41400.1
AT5G41400
RING/U-box superfamily protein
Chr1_-_9778043 4.55 AT1G28050.1
BBX13
B-box type zinc finger protein with CCT domain-containing protein
Chr1_-_2931841 4.54 AT1G09080.1
AT1G09080.2
BIP3
Heat shock protein 70 (Hsp 70) family protein
Chr5_-_20506578 4.54 AT5G50361.1
AT5G50361
hypothetical protein
Chr1_-_9337938 4.52 AT1G26930.1
AT1G26930
Galactose oxidase/kelch repeat superfamily protein
Chr5_-_2458502 4.52 AT5G07730.1
AT5G07730
transmembrane protein
Chr3_-_23040570 4.48 AT3G62260.2
AT3G62260.3
AT3G62260.1
AT3G62260
Protein phosphatase 2C family protein
Chr1_-_26163715 4.48 AT1G69570.1
AT1G69570
Dof-type zinc finger DNA-binding family protein
Chr3_+_22434864 4.46 AT3G60690.1
AT3G60690
SAUR-like auxin-responsive protein family
Chr2_+_15831854 4.45 AT2G37760.3
AT2G37760.4
AT2G37760.5
AKR4C8
NAD(P)-linked oxidoreductase superfamily protein
Chr3_-_3585850 4.45 AT3G11410.1
PP2CA
protein phosphatase 2CA
Chr1_-_19690589 4.42 AT1G52880.1
NAM
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr2_+_15831656 4.39 AT2G37760.1
AT2G37760.2
AT2G37760.6
AKR4C8
NAD(P)-linked oxidoreductase superfamily protein
Chr4_+_14894073 4.37 AT4G30470.1
AT4G30470
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_+_3524677 4.35 AT5G11090.1
AT5G11090
serine-rich protein-like protein
Chr1_+_807361 4.34 AT1G03290.2
AT1G03290.3
AT1G03290.4
AT1G03290.5
AT1G03290.6
AT1G03290.1
AT1G03290
ELKS/Rab6-interacting/CAST family protein
Chr2_-_11685342 4.32 AT2G27310.1
AT2G27310
F-box family protein
Chr1_+_9668508 4.31 AT1G27760.3
AT1G27760.1
AT1G27760.2
SAT32
interferon-related developmental regulator family protein / IFRD protein family
Chr3_+_3239180 4.30 AT3G10420.1
SPD1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_22804998 4.30 AT3G61630.1
CRF6
cytokinin response factor 6
Chr3_+_3238996 4.29 AT3G10420.2
SPD1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_8295617 4.23 AT3G23240.1
ERF1
ethylene response factor 1
Chr2_-_9056481 4.22 AT2G21130.1
AT2G21130
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr5_-_23450933 4.22 AT5G57900.1
SKIP1
SKP1 interacting partner 1
Chr1_+_26939567 4.20 AT1G71530.2
AT1G71530.1
AT1G71530
Protein kinase superfamily protein
Chr4_-_9834859 4.18 AT4G17670.1
AT4G17670
senescence-associated family protein (DUF581)
Chr4_+_15067028 4.17 AT4G30960.1
SIP3
SOS3-interacting protein 3
Chr5_+_4196256 4.17 AT5G13180.1
NAC083
NAC domain containing protein 83
Chr1_-_27407540 4.16 AT1G72830.2
NF-YA3
nuclear factor Y, subunit A3
Chr1_+_25442404 4.12 AT1G67856.1
AT1G67856
RING/U-box superfamily protein
Chr4_-_12560944 4.12 AT4G24200.1
AT4G24200.2
AT4G24200
Transcription elongation factor (TFIIS) family protein
Chr3_+_4544364 4.11 AT3G13810.5
AT3G13810.3
AT3G13810.4
AT3G13810.6
AT3G13810.2
AT3G13810.1
IDD11
indeterminate(ID)-domain 11
Chr4_-_810574 4.10 AT4G01870.1
AT4G01870.2
AT4G01870
tolB protein-like protein
Chr5_-_23367063 4.10 AT5G57685.1
GDU3
glutamine dumper 3
Chr1_-_12351229 4.08 AT1G33970.1
AT1G33970.2
AT1G33970.5
AT1G33970.4
AT1G33970.3
AT1G33970
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_-_16800307 4.05 AT1G44170.2
AT1G44170.1
ALDH3H1
aldehyde dehydrogenase 3H1
Chr3_+_4889063 4.05 AT3G14560.1
AT3G14560
hypothetical protein
Chr1_+_25041833 4.04 AT1G67070.1
AT1G67070.2
DIN9
Mannose-6-phosphate isomerase, type I
Chr5_-_20506354 4.03 AT5G50360.1
AT5G50360
von willebrand factor A domain protein
Chr3_-_1533361 4.01 AT3G05360.1
RLP30
receptor like protein 30
Chr4_-_16686818 4.01 AT4G35060.1
HIPP25
Heavy metal transport/detoxification superfamily protein
Chr5_-_7973995 3.99 AT5G23660.1
SWEET12
bidirectional sugar transporter SWEET12-like protein
Chr3_-_3554843 3.98 AT3G11330.1
PIRL9
plant intracellular ras group-related LRR 9
Chr5_-_22133688 3.98 AT5G54510.1
DFL1
Auxin-responsive GH3 family protein
Chr2_+_14253212 3.98 AT2G33700.1
PP2CG1
Protein phosphatase 2C family protein
Chr5_-_3395999 3.97 AT5G10740.2
AT5G10740
Protein phosphatase 2C family protein
Chr1_+_2274926 3.97 AT1G07400.1
AT1G07400
HSP20-like chaperones superfamily protein
Chr2_+_9840456 3.97 AT2G23110.1
AT2G23110.2
AT2G23110
Late embryogenesis abundant protein, group 6
Chr3_-_1002083 3.96 AT3G03890.2
AT3G03890
FMN binding protein
Chr3_-_1002595 3.96 AT3G03890.1
AT3G03890
FMN binding protein
Chr3_+_6958509 3.96 AT3G19970.1
AT3G19970.2
AT3G19970.3
AT3G19970.5
AT3G19970.4
AT3G19970
alpha/beta-Hydrolases superfamily protein
Chr5_-_7496990 3.95 AT5G22570.1
WRKY38
WRKY DNA-binding protein 38
Chr1_-_27407968 3.92 AT1G72830.3
NF-YA3
nuclear factor Y, subunit A3
Chr3_-_22375822 3.90 AT3G60540.3
AT3G60540.1
AT3G60540.2
AT3G60540
Preprotein translocase Sec, Sec61-beta subunit protein
Chr3_-_20910623 3.89 AT3G56400.1
WRKY70
WRKY DNA-binding protein 70

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G45300

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
3.3 9.8 GO:0033240 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
3.1 12.2 GO:0019477 lysine catabolic process(GO:0006554) L-lysine catabolic process to acetyl-CoA(GO:0019474) L-lysine catabolic process(GO:0019477) L-lysine catabolic process to acetyl-CoA via saccharopine(GO:0033512) L-lysine metabolic process(GO:0046440)
2.7 10.7 GO:0097438 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438)
2.6 10.4 GO:0010351 lithium ion transport(GO:0010351)
2.5 7.6 GO:0000032 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506)
2.5 12.6 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
2.3 9.3 GO:0051176 positive regulation of sulfur metabolic process(GO:0051176) positive regulation of secondary metabolite biosynthetic process(GO:1900378)
2.2 6.5 GO:0010597 green leaf volatile biosynthetic process(GO:0010597)
1.9 24.3 GO:1900057 positive regulation of leaf senescence(GO:1900057)
1.3 4.0 GO:0032491 detection of molecule of fungal origin(GO:0032491)
1.2 3.7 GO:1900111 positive regulation of histone H3-K9 dimethylation(GO:1900111)
1.2 12.4 GO:0016584 nucleosome positioning(GO:0016584)
1.2 4.9 GO:0006527 arginine catabolic process(GO:0006527)
1.2 7.2 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
1.2 3.6 GO:1904580 regulation of intracellular mRNA localization(GO:1904580)
1.2 8.4 GO:0009099 valine biosynthetic process(GO:0009099)
1.2 4.7 GO:0019499 cyanide metabolic process(GO:0019499)
1.0 3.0 GO:0046203 spermidine catabolic process(GO:0046203)
1.0 3.9 GO:0035865 cellular response to potassium ion(GO:0035865)
1.0 4.8 GO:0080024 indolebutyric acid metabolic process(GO:0080024)
0.9 9.4 GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.9 2.7 GO:0080040 positive regulation of cellular response to phosphate starvation(GO:0080040)
0.9 10.6 GO:0048317 seed morphogenesis(GO:0048317)
0.9 8.0 GO:0010304 PSII associated light-harvesting complex II catabolic process(GO:0010304)
0.9 7.0 GO:1901002 positive regulation of response to salt stress(GO:1901002)
0.8 4.1 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.8 3.2 GO:0010731 protein glutathionylation(GO:0010731)
0.8 2.4 GO:0000349 generation of catalytic spliceosome for first transesterification step(GO:0000349)
0.8 4.6 GO:0034035 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.8 2.3 GO:0006474 N-terminal protein amino acid acetylation(GO:0006474) N-terminal peptidyl-methionine acetylation(GO:0017196)
0.7 2.0 GO:0042787 protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0042787) regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:2000058)
0.7 2.6 GO:0070676 intralumenal vesicle formation(GO:0070676)
0.6 3.9 GO:0080151 positive regulation of salicylic acid mediated signaling pathway(GO:0080151) floral organ senescence(GO:0080187)
0.6 3.2 GO:0009590 detection of gravity(GO:0009590)
0.6 9.6 GO:0048496 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.6 3.8 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.6 2.4 GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress(GO:0043618)
0.6 19.1 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.6 2.4 GO:0060860 regulation of floral organ abscission(GO:0060860) negative regulation of floral organ abscission(GO:0060862)
0.6 5.9 GO:0010951 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.6 1.7 GO:0006493 protein O-linked glycosylation(GO:0006493)
0.6 8.5 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.5 2.7 GO:0019336 phenol-containing compound catabolic process(GO:0019336)
0.5 4.7 GO:0010230 alternative respiration(GO:0010230)
0.5 3.1 GO:0048530 fruit morphogenesis(GO:0048530)
0.5 2.5 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.5 2.0 GO:0016598 protein arginylation(GO:0016598)
0.5 2.0 GO:0001112 DNA-templated transcriptional open complex formation(GO:0001112) transcriptional open complex formation at RNA polymerase II promoter(GO:0001113) protein-DNA complex remodeling(GO:0001120) macromolecular complex remodeling(GO:0034367)
0.5 12.2 GO:0006817 phosphate ion transport(GO:0006817)
0.5 3.4 GO:1902222 L-phenylalanine catabolic process(GO:0006559) plastoquinone biosynthetic process(GO:0010236) erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process(GO:1902222)
0.5 3.4 GO:0043666 regulation of phosphoprotein phosphatase activity(GO:0043666)
0.5 4.7 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.5 0.5 GO:0080171 lytic vacuole organization(GO:0080171)
0.5 1.4 GO:0010507 negative regulation of autophagy(GO:0010507)
0.5 23.5 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.5 3.2 GO:0015909 long-chain fatty acid transport(GO:0015909)
0.4 1.3 GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.4 4.8 GO:0009954 proximal/distal pattern formation(GO:0009954)
0.4 3.0 GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly(GO:0070072)
0.4 1.7 GO:0052746 inositol phosphorylation(GO:0052746)
0.4 2.9 GO:0045899 regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045898) positive regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045899)
0.4 3.3 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.4 2.0 GO:1901001 negative regulation of response to salt stress(GO:1901001)
0.4 2.4 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.4 1.6 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.4 2.4 GO:0010255 glucose mediated signaling pathway(GO:0010255)
0.4 1.2 GO:0007019 microtubule depolymerization(GO:0007019)
0.4 2.3 GO:0010396 rhamnogalacturonan II biosynthetic process(GO:0010306) rhamnogalacturonan II metabolic process(GO:0010396)
0.4 2.6 GO:0030104 water homeostasis(GO:0030104)
0.4 0.7 GO:0035264 multicellular organism growth(GO:0035264)
0.4 1.1 GO:0045905 positive regulation of translational elongation(GO:0045901) positive regulation of translational termination(GO:0045905)
0.4 1.5 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.4 9.1 GO:0051260 protein homooligomerization(GO:0051260)
0.4 7.1 GO:0000165 MAPK cascade(GO:0000165)
0.4 1.4 GO:0015785 UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.3 29.1 GO:0009615 response to virus(GO:0009615)
0.3 2.2 GO:0019079 viral genome replication(GO:0019079)
0.3 1.3 GO:0034471 rRNA 5'-end processing(GO:0000967) ncRNA 5'-end processing(GO:0034471)
0.3 1.3 GO:0060866 leaf abscission(GO:0060866)
0.3 2.5 GO:0033617 respiratory chain complex IV assembly(GO:0008535) mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034)
0.3 7.3 GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter(GO:0032968)
0.3 3.7 GO:0051865 protein autoubiquitination(GO:0051865)
0.3 1.5 GO:0048455 stamen formation(GO:0048455)
0.3 2.9 GO:0002758 pattern recognition receptor signaling pathway(GO:0002221) immune response-activating signal transduction(GO:0002757) innate immune response-activating signal transduction(GO:0002758)
0.3 2.9 GO:0009610 response to symbiotic fungus(GO:0009610)
0.3 1.2 GO:0019322 pentose biosynthetic process(GO:0019322) arabinose biosynthetic process(GO:0019567)
0.3 1.2 GO:0006651 diacylglycerol biosynthetic process(GO:0006651)
0.3 2.0 GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000479)
0.3 5.4 GO:0002238 response to molecule of fungal origin(GO:0002238)
0.3 2.8 GO:0033619 membrane protein proteolysis(GO:0033619)
0.3 6.7 GO:0009269 response to desiccation(GO:0009269)
0.3 11.3 GO:0009816 defense response to bacterium, incompatible interaction(GO:0009816)
0.3 3.5 GO:1902074 response to salt(GO:1902074)
0.3 5.1 GO:0009641 shade avoidance(GO:0009641)
0.3 5.9 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.3 6.7 GO:0002213 defense response to insect(GO:0002213)
0.3 3.1 GO:0048280 vesicle fusion with Golgi apparatus(GO:0048280)
0.3 9.0 GO:0009718 anthocyanin-containing compound biosynthetic process(GO:0009718)
0.2 1.7 GO:0046085 adenosine metabolic process(GO:0046085)
0.2 1.2 GO:0010136 ureide metabolic process(GO:0010135) ureide catabolic process(GO:0010136)
0.2 2.3 GO:0009942 longitudinal axis specification(GO:0009942)
0.2 0.9 GO:0042178 xenobiotic catabolic process(GO:0042178)
0.2 5.7 GO:0008361 regulation of cell size(GO:0008361)
0.2 10.7 GO:0034050 plant-type hypersensitive response(GO:0009626) host programmed cell death induced by symbiont(GO:0034050)
0.2 0.7 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.2 7.4 GO:0006635 fatty acid beta-oxidation(GO:0006635)
0.2 0.8 GO:0042939 glutathione transport(GO:0034635) tripeptide transport(GO:0042939)
0.2 1.0 GO:0010506 regulation of autophagy(GO:0010506)
0.2 0.8 GO:0046621 negative regulation of organ growth(GO:0046621)
0.2 3.1 GO:0046685 response to arsenic-containing substance(GO:0046685)
0.2 3.2 GO:0006896 Golgi to vacuole transport(GO:0006896)
0.2 1.2 GO:0010071 root meristem specification(GO:0010071)
0.2 1.2 GO:0009720 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.2 0.6 GO:0008334 histone mRNA metabolic process(GO:0008334)
0.2 2.6 GO:0006521 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238)
0.2 1.1 GO:0033356 UDP-L-arabinose metabolic process(GO:0033356)
0.2 4.8 GO:0006012 galactose metabolic process(GO:0006012)
0.2 6.6 GO:0002239 response to oomycetes(GO:0002239)
0.2 0.7 GO:0006501 C-terminal protein lipidation(GO:0006501) C-terminal protein amino acid modification(GO:0018410)
0.2 7.0 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.2 6.4 GO:0070588 calcium ion transmembrane transport(GO:0070588)
0.2 3.7 GO:0008285 negative regulation of cell proliferation(GO:0008285)
0.2 12.6 GO:0009734 auxin-activated signaling pathway(GO:0009734)
0.2 21.7 GO:0006470 protein dephosphorylation(GO:0006470)
0.2 1.6 GO:0009652 thigmotropism(GO:0009652)
0.2 2.7 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)
0.2 11.0 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.2 7.2 GO:0010431 seed maturation(GO:0010431)
0.1 0.4 GO:0042353 fucose biosynthetic process(GO:0042353)
0.1 6.0 GO:0009867 jasmonic acid mediated signaling pathway(GO:0009867)
0.1 0.7 GO:0048871 multicellular organismal homeostasis(GO:0048871)
0.1 0.7 GO:0042218 1-aminocyclopropane-1-carboxylate metabolic process(GO:0018871) 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.1 5.4 GO:0016482 cytosolic transport(GO:0016482)
0.1 0.7 GO:1901269 lipid A biosynthetic process(GO:0009245) lipid A metabolic process(GO:0046493) lipooligosaccharide metabolic process(GO:1901269) lipooligosaccharide biosynthetic process(GO:1901271)
0.1 7.1 GO:0008283 cell proliferation(GO:0008283)
0.1 3.0 GO:0016236 macroautophagy(GO:0016236)
0.1 0.4 GO:0010117 photoprotection(GO:0010117)
0.1 5.7 GO:0042538 hyperosmotic salinity response(GO:0042538)
0.1 0.5 GO:0032889 regulation of vacuole fusion, non-autophagic(GO:0032889) vacuole fusion, non-autophagic(GO:0042144) vacuole fusion(GO:0097576)
0.1 3.0 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.1 1.6 GO:0010093 specification of floral organ identity(GO:0010093)
0.1 2.1 GO:0046838 phosphorylated carbohydrate dephosphorylation(GO:0046838) inositol phosphate dephosphorylation(GO:0046855) inositol phosphate catabolic process(GO:0071545)
0.1 7.6 GO:0045454 cell redox homeostasis(GO:0045454)
0.1 0.7 GO:0010018 far-red light signaling pathway(GO:0010018)
0.1 6.8 GO:1900140 regulation of seed germination(GO:0010029) regulation of seedling development(GO:1900140)
0.1 1.5 GO:0034765 regulation of transmembrane transport(GO:0034762) regulation of ion transmembrane transport(GO:0034765)
0.1 1.0 GO:0009094 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.1 5.6 GO:0043484 regulation of RNA splicing(GO:0043484)
0.1 1.8 GO:0043044 ATP-dependent chromatin remodeling(GO:0043044)
0.1 1.5 GO:0048829 root cap development(GO:0048829)
0.1 0.8 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 1.0 GO:0006646 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.1 3.7 GO:0009749 response to glucose(GO:0009749)
0.1 3.4 GO:0071804 cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)
0.1 8.5 GO:0010150 leaf senescence(GO:0010150) organ senescence(GO:0010260)
0.1 2.1 GO:0007568 aging(GO:0007568)
0.1 2.7 GO:0009863 salicylic acid mediated signaling pathway(GO:0009863)
0.1 4.3 GO:0006888 ER to Golgi vesicle-mediated transport(GO:0006888)
0.1 1.1 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.1 2.2 GO:0051084 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.1 2.9 GO:0036503 ER-associated ubiquitin-dependent protein catabolic process(GO:0030433) ERAD pathway(GO:0036503)
0.1 19.9 GO:0009414 response to water deprivation(GO:0009414)
0.1 6.4 GO:0016579 protein deubiquitination(GO:0016579)
0.1 5.1 GO:0009845 seed germination(GO:0009845)
0.1 1.4 GO:0046341 CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341)
0.1 3.0 GO:0010119 regulation of stomatal movement(GO:0010119)
0.1 1.7 GO:0034314 Arp2/3 complex-mediated actin nucleation(GO:0034314)
0.1 0.9 GO:0090351 seedling development(GO:0090351)
0.1 2.5 GO:0048235 pollen sperm cell differentiation(GO:0048235)
0.1 6.3 GO:0018105 peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209)
0.1 0.7 GO:0035196 production of miRNAs involved in gene silencing by miRNA(GO:0035196)
0.1 0.5 GO:0042776 mitochondrial ATP synthesis coupled proton transport(GO:0042776)
0.1 1.4 GO:0031124 mRNA 3'-end processing(GO:0031124)
0.1 1.0 GO:0050779 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.1 1.4 GO:0055046 microgametogenesis(GO:0055046)
0.1 0.8 GO:0048015 phosphatidylinositol-mediated signaling(GO:0048015)
0.1 7.8 GO:0009909 regulation of flower development(GO:0009909)
0.1 2.8 GO:0006997 nucleus organization(GO:0006997)
0.1 2.7 GO:0048193 Golgi vesicle transport(GO:0048193)
0.1 2.0 GO:0045489 pectin biosynthetic process(GO:0045489)
0.1 1.6 GO:0007031 peroxisome organization(GO:0007031)
0.1 13.0 GO:0006812 cation transport(GO:0006812)
0.1 1.0 GO:0007064 mitotic sister chromatid cohesion(GO:0007064)
0.1 0.6 GO:0080060 integument development(GO:0080060)
0.1 10.8 GO:0016192 vesicle-mediated transport(GO:0016192)
0.1 0.9 GO:0034033 coenzyme A biosynthetic process(GO:0015937) nucleoside bisphosphate biosynthetic process(GO:0033866) ribonucleoside bisphosphate biosynthetic process(GO:0034030) purine nucleoside bisphosphate biosynthetic process(GO:0034033)
0.1 0.5 GO:0098869 cellular oxidant detoxification(GO:0098869)
0.1 8.8 GO:0009651 response to salt stress(GO:0009651)
0.0 0.8 GO:0060548 negative regulation of cell death(GO:0060548)
0.0 4.2 GO:0000209 protein polyubiquitination(GO:0000209)
0.0 4.3 GO:0006457 protein folding(GO:0006457)
0.0 1.9 GO:0006475 internal protein amino acid acetylation(GO:0006475) histone acetylation(GO:0016573) internal peptidyl-lysine acetylation(GO:0018393) peptidyl-lysine acetylation(GO:0018394)
0.0 0.9 GO:0009846 pollen germination(GO:0009846)
0.0 1.1 GO:0006506 GPI anchor metabolic process(GO:0006505) GPI anchor biosynthetic process(GO:0006506)
0.0 0.7 GO:0000162 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.0 1.2 GO:0030490 maturation of SSU-rRNA(GO:0030490)
0.0 0.5 GO:0006074 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.0 0.4 GO:0035999 tetrahydrofolate interconversion(GO:0035999)
0.0 1.4 GO:0071367 cellular response to brassinosteroid stimulus(GO:0071367)
0.0 0.1 GO:0090056 regulation of chlorophyll metabolic process(GO:0090056)
0.0 0.5 GO:0044744 protein import into nucleus(GO:0006606) protein targeting to nucleus(GO:0044744)
0.0 0.2 GO:0015770 sucrose transport(GO:0015770)
0.0 0.3 GO:0030091 protein repair(GO:0030091)
0.0 0.1 GO:2001289 lipid X metabolic process(GO:2001289)
0.0 0.1 GO:1902101 positive regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032436) positive regulation of mitotic nuclear division(GO:0045840) positive regulation of mitotic metaphase/anaphase transition(GO:0045842) positive regulation of proteolysis(GO:0045862) positive regulation of chromosome segregation(GO:0051984) positive regulation of proteasomal protein catabolic process(GO:1901800) positive regulation of mitotic sister chromatid separation(GO:1901970) positive regulation of metaphase/anaphase transition of cell cycle(GO:1902101) positive regulation of proteolysis involved in cellular protein catabolic process(GO:1903052) positive regulation of cellular protein catabolic process(GO:1903364)
0.0 3.3 GO:0046907 intracellular transport(GO:0046907)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 11.3 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
1.4 20.7 GO:0005801 cis-Golgi network(GO:0005801)
1.4 12.2 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
1.2 5.9 GO:0001673 male germ cell nucleus(GO:0001673)
1.1 4.5 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.9 17.4 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.8 12.4 GO:0000786 nucleosome(GO:0000786)
0.8 2.3 GO:0031414 N-terminal protein acetyltransferase complex(GO:0031414) NatC complex(GO:0031417)
0.6 6.0 GO:0030014 CCR4-NOT complex(GO:0030014)
0.5 4.1 GO:0005834 heterotrimeric G-protein complex(GO:0005834)
0.5 8.6 GO:0031970 organelle envelope lumen(GO:0031970)
0.4 7.4 GO:0031012 extracellular matrix(GO:0031012)
0.4 1.6 GO:0097550 transcriptional preinitiation complex(GO:0097550)
0.4 2.3 GO:0000164 protein phosphatase type 1 complex(GO:0000164)
0.4 1.9 GO:0030906 retromer, cargo-selective complex(GO:0030906)
0.4 3.2 GO:0017119 Golgi transport complex(GO:0017119)
0.3 4.2 GO:0031902 late endosome membrane(GO:0031902)
0.3 3.4 GO:0031011 Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202)
0.3 2.4 GO:0071006 U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012)
0.3 2.0 GO:0005673 transcription factor TFIIE complex(GO:0005673)
0.3 9.1 GO:0098562 cytoplasmic side of membrane(GO:0098562)
0.3 1.5 GO:0031907 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.3 4.3 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.3 1.5 GO:0034425 etioplast envelope(GO:0034425) etioplast membrane(GO:0034426)
0.3 2.9 GO:0090544 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.3 4.4 GO:0008540 proteasome regulatory particle, base subcomplex(GO:0008540)
0.3 1.1 GO:0033185 mannosyltransferase complex(GO:0031501) dolichol-phosphate-mannose synthase complex(GO:0033185)
0.3 2.6 GO:0010168 ER body(GO:0010168)
0.3 10.0 GO:1902493 protein acetyltransferase complex(GO:0031248) acetyltransferase complex(GO:1902493)
0.2 6.0 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.2 0.9 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.2 0.7 GO:0034274 Atg12-Atg5-Atg16 complex(GO:0034274)
0.2 2.0 GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275)
0.2 2.0 GO:0030688 preribosome, small subunit precursor(GO:0030688)
0.2 3.9 GO:0031304 intrinsic component of mitochondrial inner membrane(GO:0031304)
0.2 0.9 GO:0019897 extrinsic component of plasma membrane(GO:0019897)
0.2 2.0 GO:0016471 vacuolar proton-transporting V-type ATPase complex(GO:0016471)
0.2 11.0 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.2 0.5 GO:0000015 phosphopyruvate hydratase complex(GO:0000015)
0.2 3.4 GO:0005736 DNA-directed RNA polymerase I complex(GO:0005736)
0.1 3.4 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.1 5.0 GO:0000137 Golgi cis cisterna(GO:0000137)
0.1 2.8 GO:0008023 transcription elongation factor complex(GO:0008023)
0.1 4.5 GO:0005764 lysosome(GO:0005764)
0.1 1.7 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.1 34.4 GO:0005777 peroxisome(GO:0005777) microbody(GO:0042579)
0.1 0.5 GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276)
0.1 0.5 GO:0044613 nuclear pore central transport channel(GO:0044613)
0.1 9.0 GO:0009705 plant-type vacuole membrane(GO:0009705)
0.1 1.3 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.1 0.7 GO:0005677 chromatin silencing complex(GO:0005677)
0.1 0.6 GO:0005847 mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.1 0.5 GO:0031082 BLOC complex(GO:0031082) BLOC-1 complex(GO:0031083)
0.1 0.5 GO:0035145 exon-exon junction complex(GO:0035145)
0.1 63.9 GO:0005783 endoplasmic reticulum(GO:0005783)
0.1 3.2 GO:0016592 mediator complex(GO:0016592)
0.1 2.5 GO:0000145 exocyst(GO:0000145)
0.1 3.9 GO:0010008 endosome membrane(GO:0010008)
0.1 2.0 GO:0009504 cell plate(GO:0009504)
0.1 0.9 GO:0005744 mitochondrial inner membrane presequence translocase complex(GO:0005744)
0.1 2.1 GO:0000932 cytoplasmic mRNA processing body(GO:0000932)
0.1 1.2 GO:0005819 spindle(GO:0005819)
0.0 2.0 GO:0000151 ubiquitin ligase complex(GO:0000151)
0.0 3.8 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 1.4 GO:0000139 Golgi membrane(GO:0000139)
0.0 11.6 GO:0098791 Golgi subcompartment(GO:0098791)
0.0 2.7 GO:0005768 endosome(GO:0005768)
0.0 1.4 GO:0016591 DNA-directed RNA polymerase II, holoenzyme(GO:0016591)
0.0 0.5 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.0 0.2 GO:0016281 eukaryotic translation initiation factor 4F complex(GO:0016281)
0.0 0.2 GO:0005687 U4 snRNP(GO:0005687)
0.0 213.9 GO:0005634 nucleus(GO:0005634)
0.0 0.9 GO:0090406 pollen tube(GO:0090406)
0.0 3.5 GO:0005774 vacuolar membrane(GO:0005774)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
3.8 15.2 GO:0005432 calcium:sodium antiporter activity(GO:0005432)
3.1 12.3 GO:0070401 NADP+ binding(GO:0070401)
3.1 12.2 GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity(GO:0004149) succinyltransferase activity(GO:0016748) S-succinyltransferase activity(GO:0016751)
2.5 7.6 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
1.9 13.3 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
1.8 12.4 GO:0031492 nucleosomal DNA binding(GO:0031492)
1.7 10.4 GO:0015369 calcium:cation antiporter activity(GO:0015368) calcium:proton antiporter activity(GO:0015369)
1.6 7.9 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
1.5 7.4 GO:0036440 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
1.4 8.4 GO:0052654 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
1.3 23.3 GO:0004022 alcohol dehydrogenase (NAD) activity(GO:0004022)
1.2 3.5 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
1.1 3.4 GO:0001056 RNA polymerase I activity(GO:0001054) RNA polymerase III activity(GO:0001056)
1.1 11.8 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
1.1 3.2 GO:0004046 aminoacylase activity(GO:0004046)
1.0 9.4 GO:0030291 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291)
1.0 7.2 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
1.0 3.0 GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901)
1.0 4.9 GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity(GO:0003857)
0.9 16.7 GO:0016844 strictosidine synthase activity(GO:0016844)
0.8 2.5 GO:0034596 phosphatidylinositol phosphate 4-phosphatase activity(GO:0034596) phosphatidylinositol-4-phosphate phosphatase activity(GO:0043812)
0.8 3.2 GO:0015245 fatty acid transporter activity(GO:0015245)
0.8 2.3 GO:0019136 deoxynucleoside kinase activity(GO:0019136)
0.8 3.9 GO:0003959 NADPH dehydrogenase activity(GO:0003959)
0.8 4.6 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.7 4.7 GO:0000257 nitrilase activity(GO:0000257) hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles(GO:0016815) nitrile hydratase activity(GO:0018822) indole-3-acetonitrile nitrilase activity(GO:0080061)
0.6 5.8 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.6 1.9 GO:0008517 folic acid transporter activity(GO:0008517)
0.6 20.2 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.6 4.7 GO:0009916 alternative oxidase activity(GO:0009916)
0.6 1.7 GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity(GO:0052725)
0.6 1.7 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.6 5.0 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.6 9.5 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.5 3.2 GO:0004848 ureidoglycolate hydrolase activity(GO:0004848)
0.5 3.1 GO:0005483 soluble NSF attachment protein activity(GO:0005483)
0.5 2.0 GO:0004057 arginyltransferase activity(GO:0004057)
0.5 9.3 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.5 53.5 GO:0004722 protein serine/threonine phosphatase activity(GO:0004722)
0.4 3.1 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.4 1.7 GO:0097363 protein O-GlcNAc transferase activity(GO:0097363)
0.4 3.0 GO:0004834 tryptophan synthase activity(GO:0004834)
0.4 8.5 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.4 1.2 GO:0080132 fatty acid alpha-hydroxylase activity(GO:0080132)
0.4 2.0 GO:0034511 U3 snoRNA binding(GO:0034511)
0.4 1.5 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
0.4 1.2 GO:0047874 dolichyldiphosphatase activity(GO:0047874)
0.4 7.3 GO:0015020 glucuronosyltransferase activity(GO:0015020)
0.4 2.7 GO:0051748 UTP-monosaccharide-1-phosphate uridylyltransferase activity(GO:0051748)
0.3 4.5 GO:0004714 transmembrane receptor protein tyrosine kinase activity(GO:0004714)
0.3 7.3 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.3 2.1 GO:0016312 inositol bisphosphate phosphatase activity(GO:0016312)
0.3 6.1 GO:0008515 sucrose transmembrane transporter activity(GO:0008515)
0.3 3.4 GO:0035198 miRNA binding(GO:0035198)
0.3 1.7 GO:0004594 pantothenate kinase activity(GO:0004594)
0.3 1.6 GO:0098599 palmitoyl hydrolase activity(GO:0098599)
0.3 1.6 GO:0001664 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.3 1.3 GO:0004534 5'-3' exoribonuclease activity(GO:0004534)
0.3 3.5 GO:0052745 inositol phosphate phosphatase activity(GO:0052745)
0.3 2.8 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.3 5.9 GO:0004564 beta-fructofuranosidase activity(GO:0004564)
0.3 2.4 GO:0005536 glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.3 5.8 GO:0043295 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.3 4.5 GO:0017025 TBP-class protein binding(GO:0017025)
0.3 1.1 GO:0004582 dolichyl-phosphate beta-D-mannosyltransferase activity(GO:0004582)
0.3 1.0 GO:0004307 ethanolaminephosphotransferase activity(GO:0004307)
0.3 6.4 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.3 1.5 GO:0004664 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.3 1.5 GO:0015288 porin activity(GO:0015288) wide pore channel activity(GO:0022829)
0.2 1.6 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.2 1.2 GO:0052691 UDP-arabinopyranose mutase activity(GO:0052691)
0.2 2.5 GO:0016161 beta-amylase activity(GO:0016161)
0.2 0.9 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.2 3.4 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.2 2.0 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.2 12.9 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.2 1.5 GO:0001653 peptide receptor activity(GO:0001653)
0.2 1.4 GO:0005459 UDP-galactose transmembrane transporter activity(GO:0005459)
0.2 4.2 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.2 1.2 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.2 3.1 GO:0016018 cyclosporin A binding(GO:0016018)
0.2 2.9 GO:0031491 nucleosome binding(GO:0031491)
0.2 0.9 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.2 4.2 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.2 4.5 GO:0051787 misfolded protein binding(GO:0051787)
0.2 0.5 GO:0004634 phosphopyruvate hydratase activity(GO:0004634)
0.2 1.4 GO:0004366 glycerol-3-phosphate O-acyltransferase activity(GO:0004366)
0.1 17.2 GO:0046982 protein heterodimerization activity(GO:0046982)
0.1 3.4 GO:0043424 protein histidine kinase binding(GO:0043424)
0.1 3.6 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.1 0.9 GO:0017110 nucleoside-diphosphatase activity(GO:0017110)
0.1 19.8 GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616)
0.1 0.1 GO:0016229 steroid dehydrogenase activity(GO:0016229)
0.1 6.9 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.1 0.7 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.1 0.4 GO:0004477 methenyltetrahydrofolate cyclohydrolase activity(GO:0004477) methylenetetrahydrofolate dehydrogenase (NADP+) activity(GO:0004488)
0.1 2.0 GO:0035064 methylated histone binding(GO:0035064)
0.1 6.7 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.1 2.6 GO:0016864 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.1 2.5 GO:0031386 protein tag(GO:0031386)
0.1 0.6 GO:0004766 spermidine synthase activity(GO:0004766)
0.1 1.5 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.1 3.4 GO:0019888 protein phosphatase regulator activity(GO:0019888)
0.1 3.0 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.1 6.4 GO:0036459 thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459)
0.1 0.4 GO:0003913 DNA photolyase activity(GO:0003913)
0.1 6.3 GO:0042910 xenobiotic transporter activity(GO:0042910)
0.1 5.0 GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706)
0.1 3.0 GO:0004707 MAP kinase activity(GO:0004707)
0.1 2.5 GO:0003714 transcription corepressor activity(GO:0003714)
0.1 0.8 GO:0010997 anaphase-promoting complex binding(GO:0010997)
0.1 3.2 GO:0005048 signal sequence binding(GO:0005048)
0.1 1.6 GO:0031625 ubiquitin protein ligase binding(GO:0031625) ubiquitin-like protein ligase binding(GO:0044389)
0.1 2.0 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 4.0 GO:0016831 carboxy-lyase activity(GO:0016831)
0.1 1.1 GO:0003746 translation elongation factor activity(GO:0003746)
0.1 14.5 GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981)
0.1 0.2 GO:0052629 phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.1 2.8 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.1 17.5 GO:0004842 ubiquitin-protein transferase activity(GO:0004842)
0.0 1.1 GO:0004568 chitinase activity(GO:0004568)
0.0 0.4 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 0.2 GO:0003909 DNA ligase activity(GO:0003909) DNA ligase (ATP) activity(GO:0003910)
0.0 0.6 GO:0008134 transcription factor binding(GO:0008134)
0.0 0.5 GO:0008536 Ran GTPase binding(GO:0008536)
0.0 15.0 GO:0000976 regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212)
0.0 0.3 GO:0008113 peptide-methionine (S)-S-oxide reductase activity(GO:0008113)
0.0 2.0 GO:0000149 SNARE binding(GO:0000149)
0.0 0.3 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.0 0.5 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.0 21.9 GO:0003700 nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700)
0.0 1.2 GO:0008080 N-acetyltransferase activity(GO:0008080)
0.0 1.2 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)
0.0 1.7 GO:0051015 actin filament binding(GO:0051015)
0.0 0.1 GO:0005093 Rab GDP-dissociation inhibitor activity(GO:0005093)
0.0 0.5 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.6 GO:0005347 ATP transmembrane transporter activity(GO:0005347)
0.0 0.5 GO:0050897 cobalt ion binding(GO:0050897)
0.0 1.1 GO:0015171 amino acid transmembrane transporter activity(GO:0015171)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 0.4 PID ERBB1 INTERNALIZATION PATHWAY Internalization of ErbB1
0.4 2.9 PID CDC42 PATHWAY CDC42 signaling events
0.4 1.1 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks
0.3 2.2 PID P73PATHWAY p73 transcription factor network
0.1 0.6 PID REG GR PATHWAY Glucocorticoid receptor regulatory network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 6.5 REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS Genes involved in Glycerophospholipid biosynthesis
0.8 3.9 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.5 2.2 REACTOME INTRINSIC PATHWAY FOR APOPTOSIS Genes involved in Intrinsic Pathway for Apoptosis
0.4 1.6 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.3 2.3 REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION Genes involved in Platelet activation, signaling and aggregation
0.2 0.9 REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
0.1 0.7 REACTOME INNATE IMMUNE SYSTEM Genes involved in Innate Immune System
0.0 0.2 REACTOME PI METABOLISM Genes involved in PI Metabolism