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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G41570
Z-value: 0.92
Transcription factors associated with AT5G41570
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G41570
|
AT5G41570 | WRKY DNA-binding protein 24 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY24 | arTal_v1_Chr5_+_16624157_16624157 | 0.58 | 1.1e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 5.20 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 4.13 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_+_18066960_18066960 Show fit | 4.07 |
AT2G43510.1
|
trypsin inhibitor protein 1 |
|
| arTal_v1_Chr3_+_9208861_9208941 Show fit | 3.81 |
AT3G25290.1
AT3G25290.2 |
Auxin-responsive family protein |
|
| arTal_v1_Chr2_-_13101371_13101371 Show fit | 3.78 |
AT2G30750.1
|
cytochrome P450 family 71 polypeptide |
|
| arTal_v1_Chr3_-_2849686_2849686 Show fit | 3.70 |
AT3G09270.1
|
glutathione S-transferase TAU 8 |
|
| arTal_v1_Chr1_-_24433165_24433165 Show fit | 3.64 |
AT1G65690.1
|
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
|
| arTal_v1_Chr1_-_30053936_30053936 Show fit | 3.60 |
AT1G79900.1
|
Mitochondrial substrate carrier family protein |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 3.60 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr2_+_7606728_7606905 Show fit | 3.53 |
AT2G17500.2
AT2G17500.1 AT2G17500.3 AT2G17500.4 |
Auxin efflux carrier family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G41570
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 20.0 | GO:0036294 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.4 | 16.0 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.2 | 12.2 | GO:0072665 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.1 | 11.5 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 0.2 | 10.3 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.0 | 9.5 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.2 | 8.7 | GO:0007033 | vacuole organization(GO:0007033) |
| 0.2 | 8.4 | GO:1901420 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) negative regulation of response to alcohol(GO:1901420) |
| 0.1 | 8.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 7.2 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 58.2 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 9.6 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.1 | 7.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.5 | 6.8 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.4 | 6.7 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.2 | 6.2 | GO:0009504 | cell plate(GO:0009504) |
| 0.1 | 6.2 | GO:0005770 | late endosome(GO:0005770) |
| 0.6 | 5.8 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.2 | 5.1 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.0 | 5.1 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 36.1 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 13.6 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 0.1 | 13.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 12.4 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.2 | 10.6 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.1 | 10.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 10.4 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
| 0.1 | 9.9 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.1 | 9.1 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.1 | 7.9 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.4 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.3 | 2.0 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.3 | 1.7 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.1 | 0.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 0.8 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.7 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.6 | PID P73PATHWAY | p73 transcription factor network |
| 0.2 | 0.5 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.2 | 0.5 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.2 | 0.5 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 4.9 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.4 | 3.6 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.7 | 2.9 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.2 | 1.5 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.4 | 1.3 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.3 | 1.0 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.3 | 1.0 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.2 | 1.0 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 1.0 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 0.3 | 0.9 | REACTOME APOPTOSIS | Genes involved in Apoptosis |