Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT5G39610
Z-value: 1.66
Transcription factors associated with AT5G39610
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G39610
|
AT5G39610 | NAC domain containing protein 6 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC6 | arTal_v1_Chr5_-_15859911_15859911 | -0.89 | 1.5e-10 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 12.66 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 12.63 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 12.59 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 11.98 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr1_-_10475969_10475969 Show fit | 9.99 |
AT1G29920.1
|
chlorophyll A/B-binding protein 2 |
|
| arTal_v1_Chr3_+_17228642_17228642 Show fit | 9.69 |
AT3G46780.1
|
plastid transcriptionally active 16 |
|
| arTal_v1_Chr4_+_18291218_18291218 Show fit | 9.65 |
AT4G39330.1
AT4G39330.2 |
cinnamyl alcohol dehydrogenase 9 |
|
| arTal_v1_Chr1_-_25049424_25049424 Show fit | 8.89 |
AT1G67090.2
|
ribulose bisphosphate carboxylase small chain 1A |
|
| arTal_v1_Chr1_-_25049667_25049667 Show fit | 8.89 |
AT1G67090.1
|
ribulose bisphosphate carboxylase small chain 1A |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 8.85 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G39610
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 53.3 | GO:0015979 | photosynthesis(GO:0015979) |
| 1.4 | 26.1 | GO:0006949 | syncytium formation(GO:0006949) |
| 2.2 | 23.7 | GO:0010196 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 0.8 | 21.8 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.8 | 17.6 | GO:0045493 | xylan catabolic process(GO:0045493) |
| 2.3 | 16.1 | GO:0019464 | glycine decarboxylation via glycine cleavage system(GO:0019464) |
| 1.4 | 13.6 | GO:0010088 | phloem development(GO:0010088) |
| 0.7 | 13.2 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.2 | 12.1 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 11.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 81.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 69.0 | GO:0005576 | extracellular region(GO:0005576) |
| 0.6 | 35.0 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.2 | 34.0 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.4 | 23.1 | GO:0010287 | plastoglobule(GO:0010287) |
| 2.2 | 19.6 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.1 | 17.6 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.8 | 15.5 | GO:0009986 | cell surface(GO:0009986) |
| 0.1 | 14.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 11.8 | GO:0022626 | cytosolic ribosome(GO:0022626) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 7.2 | 43.0 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 6.5 | 19.6 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.1 | 19.6 | GO:0042626 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
| 0.2 | 17.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.2 | 15.2 | GO:0043621 | protein self-association(GO:0043621) |
| 1.2 | 14.4 | GO:0031176 | endo-1,4-beta-xylanase activity(GO:0031176) |
| 0.1 | 13.7 | GO:0008168 | methyltransferase activity(GO:0008168) |
| 0.9 | 13.2 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.2 | 13.1 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 11.2 | GO:0008134 | transcription factor binding(GO:0008134) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.5 | 10.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 1.1 | 3.4 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.4 | 2.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.3 | 2.4 | NABA MATRISOME | Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins |
| 0.3 | 1.9 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.5 | 1.5 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.5 | 1.4 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.4 | 1.3 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.2 | 0.7 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 8.7 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.3 | 5.9 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 1.4 | 4.1 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.5 | 3.9 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.7 | 3.4 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.6 | 1.9 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.2 | 0.9 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.3 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |