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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G29000
Z-value: 1.52
Transcription factors associated with AT5G29000
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G29000
|
AT5G29000 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| PHL1 | arTal_v1_Chr5_-_11024865_11024978 | 0.94 | 7.1e-14 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 11.42 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 8.34 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 8.06 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr4_+_8392825_8392825 Show fit | 7.38 |
AT4G14630.1
|
germin-like protein 9 |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 7.12 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr1_-_30053936_30053936 Show fit | 6.67 |
AT1G79900.1
|
Mitochondrial substrate carrier family protein |
|
| arTal_v1_Chr1_+_2984829_2984829 Show fit | 6.53 |
AT1G09240.1
|
nicotianamine synthase 3 |
|
| arTal_v1_Chr2_+_7606728_7606905 Show fit | 6.37 |
AT2G17500.2
AT2G17500.1 AT2G17500.3 AT2G17500.4 |
Auxin efflux carrier family protein |
|
| arTal_v1_Chr5_+_18390942_18390942 Show fit | 5.88 |
AT5G45380.1
|
urea-proton symporter DEGRADATION OF UREA 3 (DUR3) |
|
| arTal_v1_Chr2_-_18646606_18646606 Show fit | 5.86 |
AT2G45220.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G29000
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 25.2 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 24.1 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
| 1.1 | 18.4 | GO:0019375 | galactolipid biosynthetic process(GO:0019375) |
| 0.1 | 15.7 | GO:0006470 | protein dephosphorylation(GO:0006470) |
| 0.3 | 13.7 | GO:0002239 | response to oomycetes(GO:0002239) |
| 2.2 | 13.0 | GO:0051176 | positive regulation of sulfur metabolic process(GO:0051176) |
| 0.4 | 12.2 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.3 | 10.4 | GO:0072666 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 1.4 | 9.9 | GO:0080187 | floral organ senescence(GO:0080187) |
| 0.2 | 9.8 | GO:0071804 | cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 115.9 | GO:0005634 | nucleus(GO:0005634) |
| 0.0 | 20.7 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.1 | 15.1 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 11.0 | GO:0016604 | nuclear body(GO:0016604) |
| 0.2 | 10.5 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.3 | 10.3 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 8.6 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.4 | 8.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.2 | 7.1 | GO:0005770 | late endosome(GO:0005770) |
| 0.4 | 7.0 | GO:0031970 | organelle envelope lumen(GO:0031970) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 58.1 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.1 | 25.3 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 22.3 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 18.6 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 15.8 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.2 | 10.8 | GO:0061650 | ubiquitin conjugating enzyme activity(GO:0061631) ubiquitin-like protein conjugating enzyme activity(GO:0061650) |
| 0.1 | 10.6 | GO:0005525 | GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561) |
| 0.2 | 10.5 | GO:0004712 | protein serine/threonine/tyrosine kinase activity(GO:0004712) |
| 0.7 | 10.4 | GO:0003978 | UDP-glucose 4-epimerase activity(GO:0003978) |
| 0.2 | 10.2 | GO:0005096 | GTPase activator activity(GO:0005096) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 5.0 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.6 | 3.6 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.6 | 2.9 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.5 | 2.7 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.3 | 2.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 1.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 1.4 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.4 | 1.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.3 | 0.8 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.5 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 4.4 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.8 | 3.3 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.8 | 3.2 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.6 | 3.1 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.8 | 2.3 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.5 | 2.1 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.3 | 1.4 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.3 | 0.8 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.1 | 0.8 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.1 | 0.7 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |