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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G26170
Z-value: 3.83
Transcription factors associated with AT5G26170
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G26170
|
AT5G26170 | WRKY DNA-binding protein 50 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY50 | arTal_v1_Chr5_-_9148391_9148391 | 0.86 | 4.2e-09 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 18.36 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 15.44 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 14.68 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 14.38 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 14.02 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 13.99 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 13.94 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr2_+_18066960_18066960 Show fit | 13.71 |
AT2G43510.1
|
trypsin inhibitor protein 1 |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 13.63 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr3_-_8007836_8007836 Show fit | 13.50 |
AT3G22600.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G26170
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 135.9 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.8 | 69.0 | GO:0010260 | organ senescence(GO:0010260) |
| 1.1 | 63.2 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 1.3 | 54.4 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 1.1 | 52.9 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.3 | 52.4 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 1.0 | 44.5 | GO:0006623 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.1 | 44.0 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 3.1 | 39.9 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.2 | 37.1 | GO:0010498 | proteasomal protein catabolic process(GO:0010498) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 317.0 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.4 | 45.5 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.8 | 35.3 | GO:0005770 | late endosome(GO:0005770) |
| 0.7 | 34.8 | GO:0016592 | mediator complex(GO:0016592) |
| 0.2 | 30.8 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.2 | 28.5 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.8 | 28.4 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.1 | 27.9 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 1.5 | 27.6 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.7 | 26.4 | GO:0009504 | cell plate(GO:0009504) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 213.6 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.7 | 85.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.4 | 73.9 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.4 | 62.7 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.5 | 57.6 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
| 0.9 | 55.3 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.7 | 47.4 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.7 | 46.3 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.1 | 40.7 | GO:0005506 | iron ion binding(GO:0005506) |
| 5.2 | 36.2 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.8 | 12.7 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 1.4 | 9.9 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
| 2.9 | 8.7 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.6 | 5.1 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 1.5 | 4.5 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.9 | 4.3 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.6 | 3.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 1.1 | 3.4 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.4 | 1.9 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.3 | 1.8 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.9 | 21.2 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 2.8 | 17.1 | REACTOME BILE ACID AND BILE SALT METABOLISM | Genes involved in Bile acid and bile salt metabolism |
| 1.2 | 10.8 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 1.6 | 9.5 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 3.0 | 8.9 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.8 | 8.3 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 1.9 | 5.8 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.8 | 5.3 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.2 | 5.0 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 1.6 | 4.8 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |