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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G25810
Z-value: 1.10
Transcription factors associated with AT5G25810
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G25810
|
AT5G25810 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| tny | arTal_v1_Chr5_-_8987898_8987898 | -0.28 | 1.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 7.68 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 7.66 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 6.14 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 6.05 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 5.76 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 5.71 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 5.49 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 5.23 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 5.13 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr4_-_17606924_17607050 Show fit | 5.01 |
AT4G37450.1
AT4G37450.2 |
arabinogalactan protein 18 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G25810
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 17.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.8 | 14.4 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 12.4 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.6 | 9.5 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 2.6 | 7.7 | GO:0015840 | urea transport(GO:0015840) |
| 0.1 | 7.7 | GO:0009664 | plant-type cell wall organization(GO:0009664) |
| 0.2 | 6.8 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 5.7 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 1.4 | 5.5 | GO:0080094 | response to trehalose-6-phosphate(GO:0080094) |
| 0.3 | 5.5 | GO:0010315 | auxin efflux(GO:0010315) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 70.5 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 43.1 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 27.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 27.2 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 20.8 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 15.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 11.0 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 10.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.2 | 8.0 | GO:0010319 | stromule(GO:0010319) |
| 0.3 | 7.3 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 11.9 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.4 | 11.1 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.3 | 10.7 | GO:0016759 | cellulose synthase activity(GO:0016759) |
| 0.5 | 10.3 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 10.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.3 | 9.3 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.1 | 9.3 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.4 | 8.9 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 8.7 | GO:0008017 | microtubule binding(GO:0008017) |
| 2.6 | 7.7 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) urea transmembrane transporter activity(GO:0015204) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.3 | 1.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.3 | 1.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 1.1 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.6 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.4 | 2.6 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.5 | 1.6 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.4 | 1.6 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.6 | 1.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.3 | 1.0 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.3 | 0.8 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.2 | 0.6 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.0 | 0.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.2 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |