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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G23930
Z-value: 1.42
Transcription factors associated with AT5G23930
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G23930
|
AT5G23930 | Mitochondrial transcription termination factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G23930 | arTal_v1_Chr5_-_8076193_8076193 | 0.15 | 4.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_17907638_17907638 Show fit | 4.56 |
AT5G44420.1
|
plant defensin 1.2 |
|
| arTal_v1_Chr5_+_24608605_24608605 Show fit | 4.02 |
AT5G61160.1
|
anthocyanin 5-aromatic acyltransferase 1 |
|
| arTal_v1_Chr5_-_17909507_17909507 Show fit | 3.88 |
AT5G44430.1
|
plant defensin 1.2C |
|
| arTal_v1_Chr2_+_11089123_11089123 Show fit | 3.73 |
AT2G26020.1
|
plant defensin 1.2b |
|
| arTal_v1_Chr1_+_5204312_5204433 Show fit | 3.15 |
AT1G15125.1
AT1G15125.2 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr4_-_9201643_9201643 Show fit | 2.86 |
AT4G16260.2
AT4G16260.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr1_+_1882907_1882907 Show fit | 2.68 |
AT1G06160.1
|
octadecanoid-responsive AP2/ERF 59 |
|
| arTal_v1_Chr1_+_28177670_28177670 Show fit | 2.62 |
AT1G75040.1
|
pathogenesis-related protein 5 |
|
| arTal_v1_Chr5_-_3402389_3402389 Show fit | 2.54 |
AT5G10760.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr2_+_1966806_1966816 Show fit | 2.44 |
AT2G05380.1
AT2G05380.2 |
glycine-rich protein 3 short isoform |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G23930
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.4 | GO:0071369 | cellular response to ethylene stimulus(GO:0071369) |
| 0.3 | 7.2 | GO:0009861 | jasmonic acid and ethylene-dependent systemic resistance(GO:0009861) |
| 0.1 | 5.6 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.2 | 4.4 | GO:0043069 | negative regulation of programmed cell death(GO:0043069) |
| 0.4 | 4.3 | GO:0010044 | response to aluminum ion(GO:0010044) |
| 0.1 | 4.2 | GO:0006635 | fatty acid beta-oxidation(GO:0006635) |
| 1.2 | 3.7 | GO:0002215 | defense response to nematode(GO:0002215) |
| 0.1 | 3.7 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 0.3 | 3.3 | GO:0048317 | seed morphogenesis(GO:0048317) |
| 0.0 | 3.3 | GO:0045454 | cell redox homeostasis(GO:0045454) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 34.8 | GO:0005739 | mitochondrion(GO:0005739) |
| 0.0 | 15.2 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 4.8 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.2 | 4.3 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 3.7 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 3.7 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 2.7 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 2.7 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 2.1 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 1.9 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 15.2 | GO:0044212 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.0 | 11.4 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.0 | 7.2 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.0 | 5.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 4.9 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 4.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.7 | 4.0 | GO:0016453 | acetyl-CoA C-acetyltransferase activity(GO:0003985) C-acetyltransferase activity(GO:0016453) |
| 0.1 | 4.0 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.2 | 3.8 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
| 0.0 | 3.7 | GO:0019900 | kinase binding(GO:0019900) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 1.9 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.3 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 0.3 | PID SHP2 PATHWAY | SHP2 signaling |
| 0.1 | 0.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.6 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.1 | 1.3 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.2 | 0.8 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 0.4 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.1 | 0.3 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.1 | 0.3 | REACTOME FRS2 MEDIATED CASCADE | Genes involved in FRS2-mediated cascade |
| 0.1 | 0.3 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.3 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.0 | 0.3 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.0 | 0.3 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |