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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT5G23280

Z-value: 0.78

Transcription factors associated with AT5G23280

Gene Symbol Gene ID Gene Info
AT5G23280
AT5G23280 TCP family transcription factor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT5G23280arTal_v1_Chr5_+_7842607_78426070.811.9e-07Click!

Activity profile of AT5G23280 motif

Sorted Z-values of AT5G23280 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_21207537 3.43 AT1G56600.1
GolS2
galactinol synthase 2
Chr3_+_5243432 2.32 AT3G15510.1
NAC2
NAC domain containing protein 2
Chr4_+_6491017 2.30 AT4G10500.1
AT4G10500
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_+_5995479 2.17 AT5G18130.2
AT5G18130
transmembrane protein
Chr5_+_5995323 2.16 AT5G18130.1
AT5G18130
transmembrane protein
Chr5_+_7138762 2.13 AT5G21020.2
AT5G21020
transmembrane protein
Chr1_-_30142697 1.96 AT1G80130.1
AT1G80130
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_9119804 1.74 AT3G25020.1
RLP42
receptor like protein 42
Chr4_-_13998604 1.53 AT4G28240.1
AT4G28240
Wound-responsive family protein
Chr4_-_16942060 1.48 AT4G35750.1
AT4G35750
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Chr1_+_29338530 1.46 AT1G78020.1
AT1G78020
senescence-associated family protein, putative (DUF581)
Chr5_+_4776733 1.44 AT5G14780.1
AT5G14780.3
AT5G14780.2
FDH
formate dehydrogenase
Chr2_-_15092353 1.40 AT2G35940.3
AT2G35940.1
BLH1
BEL1-like homeodomain 1
Chr1_-_28689208 1.39 AT1G76460.1
AT1G76460
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr2_-_15092178 1.36 AT2G35940.2
BLH1
BEL1-like homeodomain 1
Chr2_+_15192480 1.29 AT2G36220.1
AT2G36220
hypothetical protein
Chr1_-_5727406 1.21 AT1G16730.1
UP6
hypothetical protein
Chr2_+_1682856 1.17 AT2G04795.1
AT2G04795
hypothetical protein
Chr4_+_17955110 1.17 AT4G38340.2
AT4G38340
Plant regulator RWP-RK family protein
Chr4_+_744804 1.17 AT4G01720.1
WRKY47
WRKY family transcription factor
Chr5_+_15619691 1.16 AT5G39024.1
AT5G39030.1
AT5G39030.2
AT5G39024
AT5G39030
hypothetical protein
Protein kinase superfamily protein
Chr1_-_7265445 1.13 AT1G20880.3
AT1G20880.1
AT1G20880.2
AT1G20880
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr4_-_13019400 1.12 AT4G25480.1
DREB1A
dehydration response element B1A
Chr4_-_10714745 1.11 AT4G19700.1
RING
SBP (S-ribonuclease binding protein) family protein
Chr4_-_18459257 1.11 AT4G39780.1
AT4G39780
Integrase-type DNA-binding superfamily protein
Chr4_+_17954710 1.10 AT4G38340.1
AT4G38340
Plant regulator RWP-RK family protein
Chr1_+_29759030 1.08 AT1G79110.2
AT1G79110.3
AT1G79110.1
BRG2
zinc ion binding protein
Chr3_+_23289243 1.08 AT3G63010.1
GID1B
alpha/beta-Hydrolases superfamily protein
Chr3_+_8501556 1.08 AT3G23640.3
AT3G23640.2
HGL1
heteroglycan glucosidase 1
Chr4_+_9449114 1.06 AT4G16780.1
HB-2
homeobox protein 2
Chr3_+_7964127 1.06 AT3G22460.1
OASA2
O-acetylserine (thiol) lyase (OAS-TL) isoform A2
Chr3_+_4510965 1.06 AT3G13750.1
BGAL1
beta galactosidase 1
Chr4_+_18530318 1.04 AT4G39955.1
AT4G39955
alpha/beta-Hydrolases superfamily protein
Chr2_+_100484 1.04 AT2G01150.2
AT2G01150.3
AT2G01150.1
RHA2B
RING-H2 finger protein 2B
Chr3_-_9101837 1.03 AT3G24900.1
RLP39
receptor like protein 39
Chr4_-_6679508 1.02 AT4G10860.1
AT4G10860
hypothetical protein
Chr1_+_30241452 1.00 AT1G80440.1
AT1G80440
Galactose oxidase/kelch repeat superfamily protein
Chr3_-_10047453 1.00 AT3G27210.1
AT3G27210
hypothetical protein
Chr1_+_21043348 0.99 AT1G56220.2
AT1G56220.1
AT1G56220
Dormancy/auxin associated family protein
Chr1_+_21042951 0.99 AT1G56220.4
AT1G56220.5
AT1G56220.3
AT1G56220
Dormancy/auxin associated family protein
Chr3_-_9101991 0.98 AT3G24900.2
RLP39
receptor like protein 39
Chr1_-_26042741 0.97 AT1G69270.1
RPK1
receptor-like protein kinase 1
Chr3_+_8501813 0.95 AT3G23640.1
HGL1
heteroglycan glucosidase 1
Chr1_-_1421639 0.93 AT1G04990.2
AT1G04990.6
AT1G04990.4
AT1G04990.5
AT1G04990.3
AT1G04990.1
AT1G04990
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr3_+_19534585 0.92 AT3G52710.1
AT3G52710
hypothetical protein
Chr3_-_4775258 0.89 AT3G14310.1
PME3
pectin methylesterase 3
Chr2_+_19000180 0.89 AT2G46270.2
AT2G46270.1
AT2G46270.4
AT2G46270.3
GBF3
G-box binding factor 3
Chr2_-_17806073 0.89 AT2G42790.1
CSY3
citrate synthase 3
Chr2_+_19641351 0.87 AT2G48010.1
RKF3
receptor-like kinase in in flowers 3
Chr3_+_20714946 0.87 AT3G55830.1
EPC1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr5_-_8181107 0.86 AT5G24155.2
AT5G24155.3
AT5G24155.1
AT5G24155
FAD/NAD(P)-binding oxidoreductase family protein
Chr3_-_6463101 0.86 AT3G18770.1
AT3G18770
Autophagy-related protein 13
Chr1_+_5410908 0.85 AT1G15740.1
AT1G15740
Leucine-rich repeat family protein
Chr4_-_18573084 0.83 AT4G40060.1
HB16
homeobox protein 16
Chr2_-_15922321 0.82 AT2G38050.1
DET2
3-oxo-5-alpha-steroid 4-dehydrogenase family protein
Chr4_+_12594576 0.82 AT4G24290.3
AT4G24290
MAC/Perforin domain-containing protein
Chr5_+_7478860 0.82 AT5G22520.1
AT5G22520
hypothetical protein
Chr3_+_2355174 0.81 AT3G07360.10
AT3G07360.9
PUB9
plant U-box 9
Chr4_+_12594282 0.80 AT4G24290.1
AT4G24290
MAC/Perforin domain-containing protein
Chr4_+_12594045 0.79 AT4G24290.2
AT4G24290
MAC/Perforin domain-containing protein
Chr2_+_10860668 0.79 AT2G25520.1
AT2G25520
Drug/metabolite transporter superfamily protein
Chr1_+_7493213 0.79 AT1G21400.3
AT1G21400.2
AT1G21400.5
AT1G21400.4
AT1G21400.6
AT1G21400.1
AT1G21400
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Chr1_+_4542168 0.78 AT1G13260.1
RAV1
related to ABI3/VP1 1
Chr1_+_29585677 0.76 AT1G78660.3
AT1G78660.1
AT1G78660.2
GGH1
gamma-glutamyl hydrolase 1
Chr5_+_4196256 0.76 AT5G13180.1
NAC083
NAC domain containing protein 83
Chr4_+_13391293 0.76 AT4G26530.2
AT4G26530.1
FBA5
Aldolase superfamily protein
Chr3_-_6788424 0.75 AT3G19550.1
AT3G19550
glutamate racemase
Chr3_+_5234457 0.75 AT3G15500.1
NAC3
NAC domain containing protein 3
Chr5_-_23318177 0.74 AT5G57580.1
AT5G57580
Calmodulin-binding protein
Chr5_-_22777324 0.74 AT5G56260.3
AT5G56260.2
AT5G56260.4
AT5G56260.5
AT5G56260.1
AT5G56260
Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
Chr4_+_10861382 0.72 AT4G20070.1
AT4G20070.2
AAH
allantoate amidohydrolase
Chr5_+_14912659 0.69 AT5G37540.1
AT5G37540
Eukaryotic aspartyl protease family protein
Chr3_+_2354640 0.68 AT3G07360.1
AT3G07360.4
AT3G07360.3
AT3G07360.5
AT3G07360.7
AT3G07360.8
AT3G07360.6
AT3G07360.2
PUB9
plant U-box 9
Chr1_+_28070295 0.68 AT1G74710.1
AT1G74710.2
EDS16
ADC synthase superfamily protein
Chr4_+_15254877 0.67 AT4G31441.1
AT4G31441
hypothetical protein
Chr3_+_4004469 0.67 AT3G12600.1
AT3G12600.2
NUDT16
nudix hydrolase homolog 16
Chr1_-_29897166 0.67 AT1G79470.1
AT1G79470
Aldolase-type TIM barrel family protein
Chr1_-_3038408 0.67 AT1G09415.1
NIMIN-3
NIM1-interacting 3
Chr2_+_16507882 0.66 AT2G39570.1
ACR9
ACT domain-containing protein
Chr1_+_5090809 0.64 AT1G14780.1
AT1G14780
MAC/Perforin domain-containing protein
Chr1_-_6633133 0.64 AT1G19220.1
ARF19
auxin response factor 19
Chr4_+_13390754 0.64 AT4G26530.3
FBA5
Aldolase superfamily protein
Chr3_+_229075 0.64 AT3G01600.1
NAC044
NAC domain containing protein 44
Chr3_-_7412457 0.63 AT3G21140.1
AT3G21140
Pyridoxamine 5'-phosphate oxidase family protein
Chr3_-_4834015 0.62 AT3G14440.1
NCED3
nine-cis-epoxycarotenoid dioxygenase 3
Chr5_+_7156063 0.62 AT5G21070.1
AT5G21070
Fe(3+) dicitrate transport system permease
Chr1_-_23013477 0.62 AT1G62290.5
AT1G62290.6
AT1G62290.1
AT1G62290.3
AT1G62290.4
AT1G62290.2
AT1G62290
Saposin-like aspartyl protease family protein
Chr5_+_5206156 0.61 AT5G15950.2
AT5G15950
Adenosylmethionine decarboxylase family protein
Chr3_+_5121303 0.61 AT3G15210.1
ERF4
ethylene responsive element binding factor 4
Chr1_+_13026206 0.60 AT1G35420.1
AT1G35420.2
AT1G35420.3
AT1G35420
alpha/beta-Hydrolases superfamily protein
Chr1_+_27778984 0.60 AT1G73870.1
BBX16
B-box type zinc finger protein with CCT domain-containing protein
Chr3_+_20644843 0.60 AT3G55646.1
AT3G55646
TPRXL
Chr5_+_5205869 0.60 AT5G15950.1
AT5G15950
Adenosylmethionine decarboxylase family protein
Chr3_-_22990709 0.60 AT3G62090.2
AT3G62090.1
AT3G62090.3
AT3G62090.4
PIL2
phytochrome interacting factor 3-like 2
Chr2_+_17947800 0.59 AT2G43160.1
AT2G43160.3
AT2G43160.5
AT2G43160
ENTH/VHS family protein
Chr2_+_17948062 0.58 AT2G43160.4
AT2G43160.2
AT2G43160
ENTH/VHS family protein
Chr2_+_19245591 0.57 AT2G46830.1
AT2G46830.2
CCA1
circadian clock associated 1
Chr2_-_13756893 0.57 AT2G32400.1
GLR5
glutamate receptor 5
Chr5_+_25537074 0.57 AT5G63810.1
BGAL10
beta-galactosidase 10
Chr2_+_19246681 0.56 AT2G46830.3
CCA1
circadian clock associated 1
Chr2_+_13033418 0.56 AT2G30590.1
WRKY21
WRKY DNA-binding protein 21
Chr1_-_67625 0.56 AT1G01140.2
AT1G01140.3
AT1G01140.1
CIPK9
CBL-interacting protein kinase 9
Chr3_-_23377661 0.55 AT3G63270.1
AT3G63270
nuclease
Chr3_-_23013909 0.55 AT3G62150.2
AT3G62150.1
AT3G62150.3
ABCB21
P-glycoprotein 21
Chr1_-_7086873 0.55 AT1G20440.1
COR47
cold-regulated 47
Chr3_-_22362359 0.54 AT3G60520.2
AT3G60520
zinc ion-binding protein
Chr3_-_5132330 0.53 AT3G15220.1
AT3G15220
Protein kinase superfamily protein
Chr4_+_12741032 0.52 AT4G24690.1
NBR1
ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein
Chr3_+_5748497 0.52 AT3G16850.1
AT3G16850
Pectin lyase-like superfamily protein
Chr3_-_22362579 0.52 AT3G60520.1
AT3G60520
zinc ion-binding protein
Chr3_-_22169984 0.51 AT3G60030.1
SPL12
squamosa promoter-binding protein-like 12
Chr3_+_7963855 0.51 AT3G22460.2
OASA2
O-acetylserine (thiol) lyase (OAS-TL) isoform A2
Chr2_-_19114173 0.50 AT2G46550.3
AT2G46550.1
AT2G46550.2
AT2G46550
transmembrane protein
Chr1_-_29655949 0.50 AT1G78880.1
AT1G78880
Ubiquitin-specific protease family C19-related protein
Chr1_-_1829890 0.50 AT1G06040.2
AT1G06040.1
STO
B-box zinc finger family protein
Chr2_-_6792933 0.50 AT2G15570.2
AT2G15570.1
ATHM3
Thioredoxin superfamily protein
Chr3_+_21121323 0.49 AT3G57062.1
AT3G57062.2
AT3G57062
transmembrane protein
Chr3_-_4340430 0.49 AT3G13360.1
AT3G13360.2
WIP3
WPP domain interacting protein 3
Chr4_+_9558571 0.49 AT4G16990.5
AT4G16990.8
AT4G16990.7
AT4G16990.6
AT4G16990.2
AT4G16990.9
RLM3
disease resistance protein (TIR-NBS class)
Chr4_+_9560078 0.49 AT4G16990.16
AT4G16990.17
AT4G16990.1
AT4G16990.3
AT4G16990.4
RLM3
disease resistance protein (TIR-NBS class)
Chr1_-_8153530 0.49 AT1G23020.2
AT1G23020.7
AT1G23020.6
AT1G23020.5
AT1G23020.4
AT1G23020.3
AT1G23020.1
FRO3
ferric reduction oxidase 3
Chr1_-_3658608 0.49 AT1G10940.2
AT1G10940.1
SNRK2.4
Protein kinase superfamily protein
Chr5_-_24474524 0.49 AT5G60840.1
AT5G60840
hypothetical protein
Chr5_-_4132888 0.49 AT5G13020.2
AT5G13020.1
AT5G13020.3
EML3
Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
Chr1_-_436922 0.48 AT1G02230.1
NAC004
NAC domain containing protein 4
Chr3_-_7082178 0.48 AT3G20300.1
AT3G20300
extracellular ligand-gated ion channel protein (DUF3537)
Chr2_+_9488413 0.48 AT2G22330.2
AT2G22330.1
CYP79B3
cytochrome P450, family 79, subfamily B, polypeptide 3
Chr1_+_20048434 0.48 AT1G53700.1
WAG1
WAG 1
Chr2_+_11263889 0.47 AT2G26480.1
UGT76D1
UDP-glucosyl transferase 76D1
Chr3_-_3862498 0.47 AT3G12120.2
FAD2
fatty acid desaturase 2
Chr2_-_17202848 0.47 AT2G41250.1
AT2G41250
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_-_12421792 0.47 AT1G34110.2
AT1G34110.1
AT1G34110
Leucine-rich receptor-like protein kinase family protein
Chr5_+_26510146 0.47 AT5G66360.2
AT5G66360.1
DIM1B
Ribosomal RNA adenine dimethylase family protein
Chr1_+_21167565 0.47 AT1G56510.1
WRR4
Disease resistance protein (TIR-NBS-LRR class)
Chr1_+_2773941 0.47 AT1G08720.2
AT1G08720.1
EDR1
Protein kinase superfamily protein
Chr3_-_2660970 0.46 AT3G08760.3
AT3G08760.1
ATSIK
Protein kinase superfamily protein
Chr2_+_19336653 0.46 AT2G47070.1
AT2G47070.2
SPL1
squamosa promoter binding protein-like 1
Chr1_+_9481405 0.46 AT1G27290.1
AT1G27290.2
AT1G27290
transmembrane protein
Chr5_+_26253408 0.46 AT5G65670.1
IAA9
indole-3-acetic acid inducible 9
Chr4_-_9834859 0.46 AT4G17670.1
AT4G17670
senescence-associated family protein (DUF581)
Chr5_+_26253947 0.46 AT5G65670.2
IAA9
indole-3-acetic acid inducible 9
Chr4_+_9559738 0.46 AT4G16990.11
AT4G16990.13
AT4G16990.12
RLM3
disease resistance protein (TIR-NBS class)
Chr5_-_22764576 0.45 AT5G56240.1
AT5G56240.3
AT5G56240.2
AT5G56240
hapless protein
Chr1_-_9887478 0.45 AT1G28280.2
AT1G28280.1
AT1G28280
VQ motif-containing protein
Chr1_-_29436659 0.44 AT1G78240.2
AT1G78240.1
TSD2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_2660471 0.44 AT3G08760.2
ATSIK
Protein kinase superfamily protein
Chr4_+_18296388 0.44 AT4G39350.1
CESA2
cellulose synthase A2
Chr5_-_6591305 0.44 AT5G19530.1
AT5G19530.2
ACL5
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_2807055 0.44 AT3G09160.1
AT3G09160
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr3_+_16056297 0.44 AT3G44420.2
AT3G44420

Chr3_+_5183641 0.43 AT3G15355.1
UBC25
ubiquitin-conjugating enzyme 25
Chr4_+_9559908 0.42 AT4G16990.15
AT4G16990.14
RLM3
disease resistance protein (TIR-NBS class)
Chr2_+_1717833 0.42 AT2G04880.2
AT2G04880.1
ZAP1
zinc-dependent activator protein-1
Chr1_-_23807159 0.42 AT1G64140.1
AT1G64140
WRKY transcription factor
Chr3_+_3271217 0.42 AT3G10500.2
AT3G10500.1
NAC053
NAC domain containing protein 53
Chr5_-_7083226 0.42 AT5G20880.1
AT5G20880

Chr3_+_7912905 0.41 AT3G22380.2
AT3G22380.3
AT3G22380.1
TIC
time for coffee
Chr5_-_22410974 0.41 AT5G55250.1
IAMT1
IAA carboxylmethyltransferase 1
Chr4_+_9560633 0.41 AT4G16990.19
AT4G16990.18
RLM3
disease resistance protein (TIR-NBS class)
Chr5_+_6739624 0.41 AT5G19940.2
AT5G19940.1
AT5G19940
Plastid-lipid associated protein PAP / fibrillin family protein
Chr2_-_15247615 0.41 AT2G36360.2
AT2G36360.5
AT2G36360.4
AT2G36360.1
AT2G36360.3
AT2G36360
Galactose oxidase/kelch repeat superfamily protein
Chr5_+_25113948 0.40 AT5G62570.4
AT5G62570.1
AT5G62570.3
AT5G62570
Calmodulin binding protein-like protein
Chr2_-_18438565 0.40 AT2G44730.1
AT2G44730
Alcohol dehydrogenase transcription factor Myb/SANT-like family protein
Chr5_+_2299725 0.40 AT5G07300.1
BON2
Calcium-dependent phospholipid-binding Copine family protein
Chr3_+_7874145 0.40 AT3G22270.1
AT3G22270
Topoisomerase II-associated protein PAT1
Chr4_-_9421857 0.39 AT4G16750.1
AT4G16750
Integrase-type DNA-binding superfamily protein
Chr5_+_4292704 0.39 AT5G13390.1
AT5G13390.2
NEF1
no exine formation 1
Chr3_-_3863250 0.39 AT3G12120.1
FAD2
fatty acid desaturase 2
Chr3_+_7377391 0.39 AT3G21060.1
RBL
Transducin/WD40 repeat-like superfamily protein
Chr4_+_14171998 0.38 AT4G28710.1
XIH
Myosin family protein with Dil domain-containing protein
Chr1_+_26817878 0.38 AT1G71110.1
AT1G71110
transmembrane protein
Chr3_+_1983731 0.37 AT3G06470.1
AT3G06470
GNS1/SUR4 membrane protein family
Chr5_-_22410766 0.37 AT5G55250.2
IAMT1
IAA carboxylmethyltransferase 1
Chr1_+_6688463 0.37 AT1G19350.4
AT1G19350.3
AT1G19350.5
BES1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr5_-_22307561 0.36 AT5G54930.2
AT5G54930.1
AT5G54930
AT hook motif-containing protein
Chr3_-_17519305 0.36 AT3G47530.1
AT3G47530
Pentatricopeptide repeat (PPR) superfamily protein
Chr5_-_22763923 0.36 AT5G56240.4
AT5G56240
hapless protein
Chr1_+_6348048 0.36 AT1G18450.1
ARP4
actin-related protein 4
Chr5_+_8428078 0.35 AT5G24610.1
AT5G24610
cyclic AMP-responsive element-binding protein
Chr4_-_5086640 0.35 AT4G08110.1
AT4G08110

Chr4_+_12872379 0.35 AT4G25070.2
AT4G25070.1
AT4G25070
caldesmon-like protein
Chr5_+_24358885 0.35 AT5G60600.3
AT5G60600.4
AT5G60600.1
AT5G60600.5
AT5G60600.2
HDS
4-hydroxy-3-methylbut-2-enyl diphosphate synthase
Chr1_-_2432057 0.34 AT1G07870.2
AT1G07870.1
AT1G07870
Protein kinase superfamily protein
Chr4_+_18324457 0.34 AT4G39400.1
BRI1
Leucine-rich receptor-like protein kinase family protein
Chr3_-_22804104 0.34 AT3G61620.2
RRP41
3'-5'-exoribonuclease family protein
Chr5_-_6182706 0.34 AT5G18590.2
AT5G18590.1
AT5G18590
Galactose oxidase/kelch repeat superfamily protein
Chr5_-_8522679 0.34 AT5G24810.2
AT5G24810.1
AT5G24810
ABC1 family protein
Chr5_+_23324643 0.33 AT5G57610.1
AT5G57610
kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein
Chr1_+_8441073 0.32 AT1G23900.3
AT1G23900.2
AT1G23900.1
GAMMA-ADAPTIN 1
gamma-adaptin 1
Chr5_+_661936 0.32 AT5G02880.2
AT5G02880.1
UPL4
ubiquitin-protein ligase 4
Chr1_+_28313379 0.32 AT1G75440.1
UBC16
ubiquitin-conjugating enzyme 16
Chr4_+_15707425 0.32 AT4G32551.1
AT4G32551.2
LUG
transcriptional corepressor LEUNIG
Chr4_-_484524 0.32 AT4G01120.1
GBF2
G-box binding factor 2
Chr4_+_9558962 0.32 AT4G16990.10
RLM3
disease resistance protein (TIR-NBS class)
Chr2_+_15238093 0.32 AT2G36350.1
AT2G36350
Protein kinase superfamily protein
Chr4_+_2717977 0.32 AT4G05320.2
AT4G05320.6
UBQ10
polyubiquitin 10
Chr4_+_2718170 0.31 AT4G05320.1
AT4G05320.5
AT4G05320.7
AT4G05320.8
AT4G05320.3
AT4G05320.4
UBQ10
polyubiquitin 10
Chr5_+_437365 0.31 AT5G02200.2
AT5G02200.1
FHL
far-red-elongated hypocotyl1-like protein
Chr1_+_28185504 0.31 AT1G75080.1
AT1G75080.2
BZR1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr5_-_6892459 0.31 AT5G20380.1
AT5G20380.2
PHT4%3B5
phosphate transporter 4;5

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G23280

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 2.8 GO:0010201 response to continuous far red light stimulus by the high-irradiance response system(GO:0010201)
0.3 1.0 GO:0009945 radial axis specification(GO:0009945)
0.2 2.6 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.2 1.1 GO:0042754 negative regulation of circadian rhythm(GO:0042754)
0.2 2.3 GO:0048317 seed morphogenesis(GO:0048317)
0.2 0.9 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.2 1.3 GO:0009061 anaerobic respiration(GO:0009061)
0.2 1.1 GO:0010325 raffinose family oligosaccharide biosynthetic process(GO:0010325)
0.1 0.7 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.1 0.4 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.1 2.8 GO:0009641 shade avoidance(GO:0009641)
0.1 0.7 GO:0010136 ureide metabolic process(GO:0010135) ureide catabolic process(GO:0010136)
0.1 0.8 GO:0043617 cellular response to sucrose starvation(GO:0043617)
0.1 0.8 GO:0046900 tetrahydrofolylpolyglutamate metabolic process(GO:0046900)
0.1 1.6 GO:1902288 regulation of defense response to oomycetes(GO:1902288)
0.1 0.7 GO:1904961 quiescent center organization(GO:1904961)
0.1 1.1 GO:0052548 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.1 3.4 GO:0006012 galactose metabolic process(GO:0006012)
0.1 0.5 GO:0060919 auxin influx(GO:0060919)
0.1 0.3 GO:0071217 response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217)
0.1 1.6 GO:0050829 defense response to Gram-negative bacterium(GO:0050829)
0.1 1.6 GO:0006535 cysteine biosynthetic process from serine(GO:0006535)
0.1 0.7 GO:0080142 regulation of salicylic acid biosynthetic process(GO:0080142)
0.1 0.5 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.1 0.3 GO:0048657 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.1 0.4 GO:0010450 inflorescence meristem growth(GO:0010450)
0.1 0.7 GO:0006183 GTP biosynthetic process(GO:0006183)
0.1 0.4 GO:0071277 cellular response to calcium ion(GO:0071277)
0.1 0.3 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.1 1.4 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.1 0.8 GO:0030308 negative regulation of cell growth(GO:0030308)
0.1 0.6 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 0.5 GO:0046085 adenosine metabolic process(GO:0046085)
0.1 0.6 GO:0043266 regulation of potassium ion transport(GO:0043266)
0.1 0.2 GO:0018196 peptidyl-asparagine modification(GO:0018196) protein N-linked glycosylation via asparagine(GO:0018279)
0.1 0.2 GO:0071494 cellular response to UV-C(GO:0071494)
0.1 0.7 GO:0071051 polyadenylation-dependent snoRNA 3'-end processing(GO:0071051)
0.1 0.2 GO:0060964 regulation of gene silencing by miRNA(GO:0060964)
0.1 0.4 GO:0009819 drought recovery(GO:0009819)
0.1 0.7 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.0 0.2 GO:0097036 regulation of plasma membrane sterol distribution(GO:0097036)
0.0 0.3 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.0 0.7 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.0 0.3 GO:0010310 regulation of hydrogen peroxide metabolic process(GO:0010310)
0.0 3.1 GO:0009626 plant-type hypersensitive response(GO:0009626)
0.0 0.4 GO:0070534 protein K63-linked ubiquitination(GO:0070534)
0.0 1.0 GO:0047484 regulation of response to osmotic stress(GO:0047484)
0.0 2.3 GO:0006897 endocytosis(GO:0006897)
0.0 0.9 GO:0065001 polarity specification of adaxial/abaxial axis(GO:0009944) specification of axis polarity(GO:0065001)
0.0 2.2 GO:0009631 cold acclimation(GO:0009631)
0.0 0.2 GO:0010226 response to lithium ion(GO:0010226)
0.0 0.5 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.0 0.8 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.0 0.5 GO:0034644 cellular response to UV(GO:0034644)
0.0 0.5 GO:0000165 MAPK cascade(GO:0000165)
0.0 0.3 GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0019288)
0.0 0.1 GO:0035264 multicellular organism growth(GO:0035264)
0.0 0.4 GO:0006596 polyamine biosynthetic process(GO:0006596)
0.0 0.4 GO:0043967 histone H4 acetylation(GO:0043967)
0.0 0.6 GO:0071230 cellular response to amino acid stimulus(GO:0071230)
0.0 0.1 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.0 2.9 GO:0048527 lateral root development(GO:0048527)
0.0 0.9 GO:0016126 sterol biosynthetic process(GO:0016126)
0.0 0.1 GO:0006659 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.0 0.4 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 0.9 GO:0006635 fatty acid beta-oxidation(GO:0006635)
0.0 0.1 GO:0006097 glyoxylate cycle(GO:0006097) glyoxylate metabolic process(GO:0046487)
0.0 0.2 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.1 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.2 GO:2000896 glycogen biosynthetic process(GO:0005978) amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.0 0.5 GO:0080022 primary root development(GO:0080022)
0.0 0.1 GO:0001732 formation of cytoplasmic translation initiation complex(GO:0001732)
0.0 0.3 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.0 0.2 GO:0034063 stress granule assembly(GO:0034063)
0.0 0.2 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.0 0.1 GO:0010088 phloem development(GO:0010088)
0.0 0.4 GO:0010582 floral meristem determinacy(GO:0010582)
0.0 0.1 GO:0048446 petal morphogenesis(GO:0048446)
0.0 0.9 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.0 0.2 GO:0010152 pollen maturation(GO:0010152)
0.0 0.3 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.0 0.6 GO:0043067 regulation of programmed cell death(GO:0043067)
0.0 0.6 GO:0045292 mRNA cis splicing, via spliceosome(GO:0045292)
0.0 0.7 GO:0009749 response to glucose(GO:0009749)
0.0 0.2 GO:0006879 cellular iron ion homeostasis(GO:0006879)
0.0 0.6 GO:0009863 salicylic acid mediated signaling pathway(GO:0009863)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 2.8 GO:0030665 clathrin-coated vesicle membrane(GO:0030665)
0.1 0.8 GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.1 0.4 GO:0030689 Noc complex(GO:0030689)
0.1 0.5 GO:0031352 intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357)
0.1 0.3 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 0.3 GO:0034388 Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.0 0.7 GO:0000176 nuclear exosome (RNase complex)(GO:0000176)
0.0 0.4 GO:0090544 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.0 0.2 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.0 0.2 GO:0044613 nuclear pore central transport channel(GO:0044613)
0.0 0.1 GO:1902495 transmembrane transporter complex(GO:1902495)
0.0 0.1 GO:0009514 glyoxysome(GO:0009514)
0.0 0.3 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.0 2.0 GO:0000790 nuclear chromatin(GO:0000790)
0.0 0.9 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 1.2 GO:0016604 nuclear body(GO:0016604)
0.0 0.2 GO:0042575 DNA polymerase complex(GO:0042575)
0.0 0.1 GO:0005786 signal recognition particle, endoplasmic reticulum targeting(GO:0005786)
0.0 1.4 GO:1990204 oxidoreductase complex(GO:1990204)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 3.4 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.4 1.1 GO:0010331 gibberellin binding(GO:0010331)
0.3 0.9 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
0.3 0.8 GO:0035671 enone reductase activity(GO:0035671)
0.2 0.7 GO:0047443 ribonuclease inhibitor activity(GO:0008428) 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity(GO:0047443)
0.2 0.7 GO:0008909 isochorismate synthase activity(GO:0008909)
0.2 0.8 GO:0034722 gamma-glutamyl-peptidase activity(GO:0034722)
0.2 1.1 GO:0019904 protein domain specific binding(GO:0019904)
0.2 1.5 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.2 0.9 GO:0036440 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.2 0.8 GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863)
0.2 0.5 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.1 0.3 GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor(GO:0052592)
0.1 0.3 GO:0035615 clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748)
0.1 0.9 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.1 1.6 GO:0004124 cysteine synthase activity(GO:0004124)
0.1 1.4 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.1 2.0 GO:0030276 clathrin binding(GO:0030276)
0.1 0.6 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 0.4 GO:0016768 spermine synthase activity(GO:0016768)
0.1 3.1 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.1 0.4 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
0.1 0.3 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.1 0.5 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.1 0.2 GO:0003844 1,4-alpha-glucan branching enzyme activity(GO:0003844)
0.1 1.6 GO:0004565 beta-galactosidase activity(GO:0004565)
0.1 0.7 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.1 0.7 GO:0070300 phosphatidic acid binding(GO:0070300)
0.0 0.5 GO:0000293 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.0 0.3 GO:0030527 structural constituent of chromatin(GO:0030527)
0.0 0.5 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 4.1 GO:0046982 protein heterodimerization activity(GO:0046982)
0.0 0.2 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.6 GO:0031386 protein tag(GO:0031386)
0.0 0.1 GO:0030942 endoplasmic reticulum signal peptide binding(GO:0030942)
0.0 0.6 GO:0008066 glutamate receptor activity(GO:0008066)
0.0 0.2 GO:0004715 non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.0 0.1 GO:0016987 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.0 0.1 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.0 1.0 GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor(GO:0016620)
0.0 0.1 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.0 0.0 GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity(GO:0004042)
0.0 0.1 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 0.7 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.0 0.3 GO:0030515 snoRNA binding(GO:0030515)
0.0 0.3 GO:0019902 phosphatase binding(GO:0019902)
0.0 0.2 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 2.2 GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981)
0.0 0.2 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.0 1.8 GO:0030246 carbohydrate binding(GO:0030246)
0.0 0.3 GO:0044183 protein binding involved in protein folding(GO:0044183)
0.0 1.8 GO:0001159 core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)
0.0 4.5 GO:0000975 regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212)
0.0 0.2 GO:0008420 CTD phosphatase activity(GO:0008420)