Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT5G23280
Z-value: 0.78
Transcription factors associated with AT5G23280
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G23280
|
AT5G23280 | TCP family transcription factor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G23280 | arTal_v1_Chr5_+_7842607_7842607 | 0.81 | 1.9e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_21207537_21207537 Show fit | 3.43 |
AT1G56600.1
|
galactinol synthase 2 |
|
| arTal_v1_Chr3_+_5243432_5243432 Show fit | 2.32 |
AT3G15510.1
|
NAC domain containing protein 2 |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 2.30 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_+_5995479_5995479 Show fit | 2.17 |
AT5G18130.2
|
transmembrane protein |
|
| arTal_v1_Chr5_+_5995323_5995323 Show fit | 2.16 |
AT5G18130.1
|
transmembrane protein |
|
| arTal_v1_Chr5_+_7138762_7138762 Show fit | 2.13 |
AT5G21020.2
|
transmembrane protein |
|
| arTal_v1_Chr1_-_30142697_30142697 Show fit | 1.96 |
AT1G80130.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| arTal_v1_Chr3_-_9119804_9119804 Show fit | 1.74 |
AT3G25020.1
|
receptor like protein 42 |
|
| arTal_v1_Chr4_-_13998604_13998604 Show fit | 1.53 |
AT4G28240.1
|
Wound-responsive family protein |
|
| arTal_v1_Chr4_-_16942060_16942060 Show fit | 1.48 |
AT4G35750.1
|
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G23280
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.4 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.0 | 3.1 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 0.0 | 2.9 | GO:0048527 | lateral root development(GO:0048527) |
| 0.6 | 2.8 | GO:0010201 | response to continuous far red light stimulus by the high-irradiance response system(GO:0010201) |
| 0.1 | 2.8 | GO:0009641 | shade avoidance(GO:0009641) |
| 0.2 | 2.6 | GO:2000071 | regulation of defense response by callose deposition(GO:2000071) |
| 0.2 | 2.3 | GO:0048317 | seed morphogenesis(GO:0048317) |
| 0.0 | 2.3 | GO:0006897 | endocytosis(GO:0006897) |
| 0.0 | 2.2 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 1.6 | GO:1902288 | regulation of defense response to oomycetes(GO:1902288) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.8 | GO:0030665 | clathrin-coated vesicle membrane(GO:0030665) |
| 0.0 | 2.0 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 1.4 | GO:1990204 | oxidoreductase complex(GO:1990204) |
| 0.0 | 1.2 | GO:0016604 | nuclear body(GO:0016604) |
| 0.0 | 0.9 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 0.8 | GO:0005947 | mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
| 0.0 | 0.7 | GO:0000176 | nuclear exosome (RNase complex)(GO:0000176) |
| 0.1 | 0.5 | GO:0031352 | intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357) |
| 0.1 | 0.4 | GO:0030689 | Noc complex(GO:0030689) |
| 0.0 | 0.4 | GO:0090544 | SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.5 | GO:0000975 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.0 | 4.1 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.4 | 3.4 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.1 | 3.1 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.0 | 2.2 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.1 | 2.0 | GO:0030276 | clathrin binding(GO:0030276) |
| 0.0 | 1.8 | GO:0030246 | carbohydrate binding(GO:0030246) |
| 0.0 | 1.8 | GO:0001159 | core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |
| 0.1 | 1.6 | GO:0004124 | cysteine synthase activity(GO:0004124) |
| 0.1 | 1.6 | GO:0004565 | beta-galactosidase activity(GO:0004565) |