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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G22990
Z-value: 3.76
Transcription factors associated with AT5G22990
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G22990
|
AT5G22990 | C2H2-like zinc finger protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G22990 | arTal_v1_Chr5_-_7692468_7692468 | 0.42 | 2.5e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 18.88 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 18.36 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 18.26 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 17.33 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr2_+_10906460_10906460 Show fit | 17.26 |
AT2G25625.2
|
histone deacetylase-like protein |
|
| arTal_v1_Chr2_+_10906215_10906215 Show fit | 16.77 |
AT2G25625.1
|
histone deacetylase-like protein |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 16.27 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 16.08 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr1_+_5820080_5820080 Show fit | 15.93 |
AT1G17020.1
|
senescence-related gene 1 |
|
| arTal_v1_Chr1_+_10892445_10892445 Show fit | 15.84 |
AT1G30700.1
|
FAD-binding Berberine family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G22990
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 73.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.5 | 65.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 54.3 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.2 | 42.9 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
| 0.9 | 41.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.4 | 31.9 | GO:0010150 | leaf senescence(GO:0010150) |
| 0.6 | 30.7 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 9.6 | 28.9 | GO:0016118 | tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124) |
| 0.2 | 26.8 | GO:0006511 | ubiquitin-dependent protein catabolic process(GO:0006511) |
| 8.6 | 25.9 | GO:0016046 | detection of fungus(GO:0016046) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 422.8 | GO:0005634 | nucleus(GO:0005634) |
| 0.5 | 52.1 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.2 | 45.4 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.4 | 24.4 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 17.8 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.8 | 15.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 1.4 | 15.4 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
| 0.3 | 15.2 | GO:0016592 | mediator complex(GO:0016592) |
| 0.2 | 14.3 | GO:0045271 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
| 0.4 | 14.0 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 111.4 | GO:0001067 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.3 | 62.0 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.4 | 55.9 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) ubiquitin-like protein ligase activity(GO:0061659) |
| 0.3 | 43.1 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 4.0 | 36.3 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 1.3 | 34.9 | GO:0051787 | misfolded protein binding(GO:0051787) |
| 0.3 | 31.0 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.5 | 29.7 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) ubiquitin-like protein conjugating enzyme activity(GO:0061650) |
| 8.6 | 25.9 | GO:0052626 | 4-aminobenzoate amino acid synthetase activity(GO:0052625) benzoate amino acid synthetase activity(GO:0052626) vanillate amino acid synthetase activity(GO:0052627) 4-hydroxybenzoate amino acid synthetase activity(GO:0052628) |
| 2.1 | 25.7 | GO:0050373 | UDP-arabinose 4-epimerase activity(GO:0050373) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 5.8 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.8 | 4.0 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.9 | 3.8 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 1.0 | 2.9 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.2 | 1.6 | PID ATR PATHWAY | ATR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.9 | 11.6 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.8 | 9.1 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 1.0 | 5.8 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.9 | 5.4 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.7 | 4.2 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 1.3 | 3.8 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
| 1.0 | 2.9 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.7 | 2.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.6 | 1.9 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.2 | 1.6 | REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER | Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER |