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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G19790
Z-value: 1.46
Transcription factors associated with AT5G19790
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G19790
|
AT5G19790 | related to AP2 11 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RAP2.11 | arTal_v1_Chr5_-_6690040_6690040 | -0.19 | 3.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 3.30 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 2.84 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 2.78 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr3_-_11013451_11013451 Show fit | 2.71 |
AT3G29030.1
|
expansin A5 |
|
| arTal_v1_Chr3_-_4008018_4008018 Show fit | 2.70 |
AT3G12610.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr3_-_16448844_16448844 Show fit | 2.49 |
AT3G44990.1
|
xyloglucan endo-transglycosylase-related 8 |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 2.47 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr1_+_2097106_2097106 Show fit | 2.34 |
AT1G06830.1
|
Glutaredoxin family protein |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 2.30 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr2_+_16130290_16130290 Show fit | 2.27 |
AT2G38540.1
|
lipid transfer protein 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G19790
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 9.5 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 9.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.4 | 8.3 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 5.6 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 4.7 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.1 | 4.4 | GO:0009629 | response to gravity(GO:0009629) |
| 0.2 | 3.6 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 3.5 | GO:0042335 | cuticle development(GO:0042335) |
| 0.5 | 3.1 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.3 | 3.1 | GO:1990066 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 39.6 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 12.2 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 9.7 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 6.1 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 4.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 4.1 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 4.1 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.4 | 3.9 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.1 | 3.3 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.0 | 2.6 | GO:0090406 | pollen tube(GO:0090406) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.4 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 4.6 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.2 | 4.1 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.0 | 3.7 | GO:0008289 | lipid binding(GO:0008289) |
| 0.1 | 3.4 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 1.0 | 3.1 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.1 | 3.1 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.7 | 3.0 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
| 0.4 | 3.0 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.2 | 3.0 | GO:0010329 | auxin efflux transmembrane transporter activity(GO:0010329) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
| 0.1 | 1.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 0.6 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 0.4 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.3 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.3 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.3 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.0 | 0.1 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.9 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.0 | 0.9 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.2 | 0.7 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
| 0.1 | 0.7 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.4 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.4 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.2 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.0 | 0.2 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |