GSE43616: Time-course of wild-type Arabidopsis leaf
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT5G18450
|
AT5G18450 | Integrase-type DNA-binding superfamily protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
AT5G18450 | arTal_v1_Chr5_-_6117041_6117041 | 0.33 | 8.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr4_+_10142255_10142255 Show fit | 1.78 |
AT4G18350.1
|
nine-cis-epoxycarotenoid dioxygenase 2 |
|
arTal_v1_Chr1_-_575085_575085 Show fit | 1.68 |
AT1G02660.1
|
alpha/beta-Hydrolases superfamily protein |
|
arTal_v1_Chr1_-_1349478_1349478 Show fit | 1.64 |
AT1G04800.1
|
glycine-rich protein |
|
arTal_v1_Chr1_+_1469541_1469541 Show fit | 1.60 |
AT1G05100.1
|
mitogen-activated protein kinase kinase kinase 18 |
|
arTal_v1_Chr1_-_26327965_26327965 Show fit | 1.53 |
AT1G69900.1
|
Actin cross-linking protein |
|
arTal_v1_Chr2_+_15514923_15514923 Show fit | 1.51 |
AT2G36950.1
|
Heavy metal transport/detoxification superfamily protein |
|
arTal_v1_Chr4_+_14304921_14304921 Show fit | 1.50 |
AT4G29020.2
AT4G29020.1 |
glycine-rich protein |
|
arTal_v1_Chr5_-_26531176_26531176 Show fit | 1.41 |
AT5G66440.1
|
tRNA-methyltransferase non-catalytic subunit trm6MTase subunit |
|
arTal_v1_Chr4_+_17592996_17592996 Show fit | 1.32 |
AT4G37420.1
|
glycosyltransferase family protein (DUF23) |
|
arTal_v1_Chr4_+_14579563_14579563 Show fit | 1.31 |
AT4G29780.1
|
nuclease |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.0 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
0.0 | 3.3 | GO:0010200 | response to chitin(GO:0010200) |
0.5 | 3.2 | GO:0043617 | cellular response to sucrose starvation(GO:0043617) L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982) |
0.0 | 2.9 | GO:0043086 | negative regulation of catalytic activity(GO:0043086) |
0.8 | 2.5 | GO:0016110 | tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124) |
0.0 | 2.3 | GO:0030198 | extracellular matrix organization(GO:0030198) extracellular structure organization(GO:0043062) |
0.0 | 2.2 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
0.0 | 1.8 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
0.4 | 1.6 | GO:1902457 | negative regulation of stomatal opening(GO:1902457) |
0.2 | 1.6 | GO:0010929 | positive regulation of auxin mediated signaling pathway(GO:0010929) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 16.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 5.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
0.1 | 1.7 | GO:0031012 | extracellular matrix(GO:0031012) |
0.1 | 1.6 | GO:0051286 | growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404) |
0.0 | 1.4 | GO:0000145 | exocyst(GO:0000145) |
0.0 | 1.4 | GO:0009524 | phragmoplast(GO:0009524) |
0.2 | 1.2 | GO:0005947 | mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
0.0 | 1.1 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
0.1 | 1.0 | GO:0016363 | nuclear matrix(GO:0016363) |
0.1 | 0.9 | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1)(GO:0045261) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 3.6 | GO:0045549 | 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549) |
0.5 | 3.2 | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066) |
0.0 | 2.7 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.1 | 2.5 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
0.0 | 2.5 | GO:0005507 | copper ion binding(GO:0005507) |
0.2 | 2.2 | GO:0004709 | MAP kinase kinase kinase activity(GO:0004709) |
0.0 | 2.1 | GO:0004857 | enzyme inhibitor activity(GO:0004857) |
0.0 | 2.0 | GO:0030599 | pectinesterase activity(GO:0030599) |
0.2 | 1.6 | GO:0009922 | fatty acid elongase activity(GO:0009922) |
0.1 | 1.6 | GO:0005384 | manganese ion transmembrane transporter activity(GO:0005384) cadmium ion transmembrane transporter activity(GO:0015086) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 0.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 0.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.6 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
0.1 | 0.5 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
0.1 | 0.5 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.0 | 0.4 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.0 | 0.1 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.0 | 0.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |